Qing Nie

Title(s)Professor, Mathematics
SchoolSchool of Physical Sciences
Address540F Rowland Hall
Zot 3875
Irvine CA 92697
Phone(949) 824-5530
vCardDownload vCard
    Other Positions
    Title(s)Professor, Developmental & Cell Biology

    Collapse Research 
    Collapse Research Activities and Funding
    Dissecting single cell dynamics that coordinate neural crest migration and diversification
    NIH R01DE030565Apr 1, 2021 - Mar 31, 2026
    Role: Co-Principal Investigator
    Mathematical, Computational and Systems Biology
    NIH T32GM136624Jul 1, 2020 - Jun 30, 2025
    Role: Co-Principal Investigator
    Multiscale Models of Wound Cell Plasticity for Regeneration
    NIH U01AR073159Sep 1, 2018 - Aug 31, 2023
    Role: Principal Investigator
    Spatial Dynamics of Tissue and Organ Size Control
    NIH R01NS095355Sep 30, 2015 - Jun 30, 2021
    Role: Co-Principal Investigator
    Defining an Integrated Signaling Network That Patterns the Craniofacial Skeleton
    NIH R01DE023050Jul 1, 2014 - Mar 31, 2020
    Role: Co-Principal Investigator
    Stochastic Dynamics and Noise Control in Patterning Systems
    NIH R01GM107264Jul 1, 2014 - Jun 30, 2019
    Role: Principal Investigator
    Mathematical, Computational and Systems Biology
    NIH T32EB009418Apr 1, 2009 - Mar 31, 2020
    Role: Co-Principal Investigator
    Specificity and Spatial Dynamics of Cell Signaling: The*
    NIH R01GM075309Apr 1, 2005 - Mar 31, 2010
    Role: Principal Investigator
    Principles of Robust Developmental Patterning
    NIH R01GM067247Jul 1, 2002 - Dec 31, 2015
    Role: Co-Principal Investigator
    Role of Ovol Genes in Epidermal Development
    NIH R01AR047320Dec 1, 2000 - Jul 31, 2012
    Role: Co-Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Single-cell transcriptomics of human-skin-equivalent organoids. Cell Rep. 2023 May 16; 42(5):112511. Stabell AR, Lee GE, Jia Y, Wong KN, Wang S, Ling J, Nguyen SD, Sen GL, Nie Q, Atwood SX. PMID: 37195865.
      View in: PubMed   Mentions:    Fields:    
    2. exFINDER: identify external communication signals using single-cell transcriptomics data. Nucleic Acids Res. 2023 Apr 07. He C, Zhou P, Nie Q. PMID: 37026478.
      View in: PubMed   Mentions:    Fields:    
    3. Preneoplastic stromal cells promote BRCA1-mediated breast tumorigenesis. Nat Genet. 2023 Mar 13. Nee K, Ma D, Nguyen QH, Pein M, Pervolarakis N, Insua-Rodr?guez J, Gong Y, Hernandez G, Alshetaiwi H, Williams J, Rauf M, Dave KR, Boyapati K, Hasnain A, Calderon C, Markaryan A, Edwards R, Lin E, Parajuli R, Zhou P, Nie Q, Shalabi S, LaBarge MA, Kessenbrock K. PMID: 36914836.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    4. Inferring neuron-neuron communications from single-cell transcriptomics through NeuronChat. Nat Commun. 2023 02 28; 14(1):1128. Zhao W, Johnston KG, Ren H, Xu X, Nie Q. PMID: 36854676; PMCID: PMC9974942.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    5. Differential cell composition and split epidermal differentiation in human palm, sole, and hip skin. Cell Rep. 2023 01 31; 42(1):111994. Wiedemann J, Billi AC, Bocci F, Kashgari G, Xing E, Tsoi LC, Meller L, Swindell WR, Wasikowski R, Xing X, Ma F, Gharaee-Kermani M, Kahlenberg JM, Harms PW, Maverakis E, Nie Q, Gudjonsson JE, Andersen B. PMID: 36732947; PMCID: PMC9939370.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    6. Inferring neuron-neuron communications from single-cell transcriptomics through NeuronChat. bioRxiv. 2023 Jan 16. Zhao W, Johnston KG, Ren H, Xu X, Nie Q. PMID: 36712056; PMCID: PMC9882151.
      View in: PubMed   Mentions:
    7. Was Wuhan the early epicenter of the COVID-19 pandemic?-A critique. Natl Sci Rev. 2023 Apr; 10(4):nwac287. Cao Y, Chen L, Chen H, Cun Y, Dai X, Du H, Gao F, Guo F, Guo Y, Hao P, He S, He S, He X, Hu Z, Hoh BP, Jin X, Jiang Q, Jiang Q, Khan A, Kong HZ, Li J, Li SC, Li Y, Lin Q, Liu J, Liu Q, Lu J, Lu X, Luo S, Nie Q, Qiu Z, Shi T, Song X, Su J, Tao SC, Wang C, Wang CC, Wang GD, Wang J, Wu Q, Wu S, Xu S, Xue Y, Yang W, Yang Z, Ye K, Ye YN, Yu L, Zhao F, Zhao Y, Zhai W, Zhang D, Zhang L, Zheng H, Zhou Q, Zhu T, Zhang YP. PMID: 37089192; PMCID: PMC10116607.
      View in: PubMed   Mentions:
    8. spliceJAC: transition genes and state-specific gene regulation from single-cell transcriptome data. Mol Syst Biol. 2022 11; 18(11):e11176. Bocci F, Zhou P, Nie Q. PMID: 36321549; PMCID: PMC9627675.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    9. Integrated analysis of multimodal single-cell data with structural similarity. Nucleic Acids Res. 2022 Sep 21. Cao Y, Fu L, Wu J, Peng Q, Nie Q, Zhang J, Xie X. PMID: 36130281.
      View in: PubMed   Mentions:    Fields:    
    10. Analyzing network diversity of cell-cell interactions in COVID-19 using single-cell transcriptomics. Front Genet. 2022; 13:948508. Wang X, Almet AA, Nie Q. PMID: 36105110; PMCID: PMC9465179.
      View in: PubMed   Mentions:
    11. Wound healing in aged skin exhibits systems-level alterations in cellular composition and cell-cell communication. Cell Rep. 2022 08 02; 40(5):111155. Vu R, Jin S, Sun P, Haensel D, Nguyen QH, Dragan M, Kessenbrock K, Nie Q, Dai X. PMID: 35926463; PMCID: PMC9901190.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    12. Identifying multicellular spatiotemporal organization of cells with SpaceFlow. Nat Commun. 2022 07 14; 13(1):4076. Ren H, Walker BL, Cang Z, Nie Q. PMID: 35835774; PMCID: PMC9283532.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    13. Multimodal analyses of vitiligo skin identify tissue characteristics of stable disease. JCI Insight. 2022 07 08; 7(13). Shiu J, Zhang L, Lentsch G, Flesher JL, Jin S, Polleys C, Jo SJ, Mizzoni C, Mobasher P, Kwan J, Rius-Diaz F, Tromberg BJ, Georgakoudi I, Nie Q, Balu M, Ganesan AK. PMID: 35653192; PMCID: PMC9310536.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    14. Hedgehog signaling reprograms hair follicle niche fibroblasts to a hyper-activated state. Dev Cell. 2022 07 25; 57(14):1758-1775.e7. Liu Y, Guerrero-Juarez CF, Xiao F, Shettigar NU, Ramos R, Kuan CH, Lin YC, de Jesus Martinez Lomeli L, Park JM, Oh JW, Liu R, Lin SJ, Tartaglia M, Yang RB, Yu Z, Nie Q, Li J, Plikus MV. PMID: 35777353; PMCID: PMC9344965.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    15. Single-cell analysis of human basal cell carcinoma reveals novel regulators of tumor growth and the tumor microenvironment. Sci Adv. 2022 06 10; 8(23):eabm7981. Guerrero-Juarez CF, Lee GH, Liu Y, Wang S, Karikomi M, Sha Y, Chow RY, Nguyen TTL, Iglesias VS, Aasi S, Drummond ML, Nie Q, Sarin K, Atwood SX. PMID: 35687691; PMCID: PMC9187229.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimals
    16. Magnitude and breadth of antibody cross-reactivity induced by recombinant influenza hemagglutinin trimer vaccine is enhanced by combination adjuvants. Sci Rep. 2022 06 02; 12(1):9198. Hernandez-Davies JE, Dollinger EP, Pone EJ, Felgner J, Liang L, Strohmeier S, Jan S, Albin TJ, Jain A, Nakajima R, Jasinskas A, Krammer F, Esser-Kahn A, Felgner PL, Nie Q, Davies DH. PMID: 35654904; PMCID: PMC9163070.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimals
    17. Tracking longitudinal population dynamics of single neuronal calcium signal using SCOUT. Cell Rep Methods. 2022 May 23; 2(5):100207. Johnston KG, Grieco SF, Zhang H, Jin S, Xu X, Nie Q. PMID: 35637911; PMCID: PMC9142684.
      View in: PubMed   Mentions:
    18. De Novo Assembly of 20 Chicken Genomes Reveals the Undetectable Phenomenon for Thousands of Core Genes on Microchromosomes and Subtelomeric Regions. Mol Biol Evol. 2022 04 10; 39(4). Li M, Sun C, Xu N, Bian P, Tian X, Wang X, Wang Y, Jia X, Heller R, Wang M, Wang F, Dai X, Luo R, Guo Y, Wang X, Yang P, Hu D, Liu Z, Fu W, Zhang S, Li X, Wen C, Lan F, Siddiki AZ, Suwannapoom C, Zhao X, Nie Q, Hu X, Jiang Y, Yang N. PMID: 35325213; PMCID: PMC9021737.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    19. Deciphering tissue structure and function using spatial transcriptomics. Commun Biol. 2022 03 10; 5(1):220. Walker BL, Cang Z, Ren H, Bourgain-Chang E, Nie Q. PMID: 35273328; PMCID: PMC8913632.
      View in: PubMed   Mentions: 6  Translation:Cells
    20. Machine Learning of Single Cell Transcriptomic Data From anti-PD-1 Responders and Non-responders Reveals Distinct Resistance Mechanisms in Skin Cancers and PDAC. Front Genet. 2021; 12:806457. Liu R, Dollinger E, Nie Q. PMID: 35178072; PMCID: PMC8844526.
      View in: PubMed   Mentions:
    21. Single-cell transcriptomic analysis of zebrafish cranial neural crest reveals spatiotemporal regulation of lineage decisions during development. Cell Rep. 2021 12 21; 37(12):110140. Tatarakis D, Cang Z, Wu X, Sharma PP, Karikomi M, MacLean AL, Nie Q, Schilling TF. PMID: 34936864; PMCID: PMC8741273.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    22. Single-Cell RNA-Seq Analysis Reveals the Acquisition of Cancer Stem Cell Traits and Increase of Cell-Cell Signaling during EMT Progression. Cancers (Basel). 2021 Nov 16; 13(22). Bocci F, Zhou P, Nie Q. PMID: 34830900; PMCID: PMC8616061.
      View in: PubMed   Mentions: 6  
    23. A Study of Gene Expression, Structure, and Contractility of iPSC-Derived Cardiac Myocytes from a Family with Heart Disease due to LMNA Mutation. Ann Biomed Eng. 2021 Dec; 49(12):3524-3539. Mehrabi M, Morris TA, Cang Z, Nguyen CHH, Sha Y, Asad MN, Khachikyan N, Greene TL, Becker DM, Nie Q, Zaragoza MV, Grosberg A. PMID: 34585335; PMCID: PMC8671287.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    24. Examining age-dependent DNA methylation patterns and gene expression in the male and female mouse hippocampus. Neurobiol Aging. 2021 12; 108:223-235. Chinn CA, Ren H, Morival JLP, Nie Q, Wood MA, Downing TL. PMID: 34598831; PMCID: PMC9186538.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    25. Modeling the effects of EMT-immune dynamics on carcinoma disease progression. Commun Biol. 2021 08 18; 4(1):983. Bergman DR, Karikomi MK, Yu M, Nie Q, MacLean AL. PMID: 34408236; PMCID: PMC8373868.
      View in: PubMed   Mentions: Translation:Humans
    26. Multiple morphogens and rapid elongation promote segmental patterning during development. PLoS Comput Biol. 2021 06; 17(6):e1009077. Qiu Y, Fung L, Schilling TF, Nie Q. PMID: 34161317; PMCID: PMC8259987.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    27. The landscape of cell-cell communication through single-cell transcriptomics. Curr Opin Syst Biol. 2021 Jun; 26:12-23. Almet AA, Cang Z, Jin S, Nie Q. PMID: 33969247; PMCID: PMC8104132.
      View in: PubMed   Mentions: 31  
    28. DEEPsc: A Deep Learning-Based Map Connecting Single-Cell Transcriptomics and Spatial Imaging Data. Front Genet. 2021; 12:636743. Maseda F, Cang Z, Nie Q. PMID: 33833776; PMCID: PMC8021700.
      View in: PubMed   Mentions: 8  
    29. A multiscale model via single-cell transcriptomics reveals robust patterning mechanisms during early mammalian embryo development. PLoS Comput Biol. 2021 03; 17(3):e1008571. Cang Z, Wang Y, Wang Q, Cho KWY, Holmes W, Nie Q. PMID: 33684098; PMCID: PMC7971879.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    30. Single-cell RNA sequencing of preadipocytes reveals the cell fate heterogeneity induced by melatonin. J Pineal Res. 2021 Apr; 70(3):e12725. Li Z, Zheng M, Mo J, Li K, Yang X, Guo L, Zhang X, Abdalla BA, Nie Q. PMID: 33621367.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    31. Inference and analysis of cell-cell communication using CellChat. Nat Commun. 2021 02 17; 12(1):1088. Jin S, Guerrero-Juarez CF, Zhang L, Chang I, Ramos R, Kuan CH, Myung P, Plikus MV, Nie Q. PMID: 33597522; PMCID: PMC7889871.
      View in: PubMed   Mentions: 567     Fields:    Translation:HumansAnimalsCells
    32. Transcriptome Response of Liver and Muscle in Heat-Stressed Laying Hens. Genes (Basel). 2021 02 10; 12(2). Wang Y, Jia X, Hsieh JCF, Monson MS, Zhang J, Shu D, Nie Q, Persia ME, Rothschild MF, Lamont SJ. PMID: 33578825; PMCID: PMC7916550.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    33. Inference of Intercellular Communications and Multilayer Gene-Regulations of Epithelial-Mesenchymal Transition From Single-Cell Transcriptomic Data. Front Genet. 2020; 11:604585. Sha Y, Wang S, Bocci F, Zhou P, Nie Q. PMID: 33488673; PMCID: PMC7820899.
      View in: PubMed   Mentions: 12  
    34. scMC learns biological variation through the alignment of multiple single-cell genomics datasets. Genome Biol. 2021 01 04; 22(1):10. Zhang L, Nie Q. PMID: 33397454; PMCID: PMC7784288.
      View in: PubMed   Mentions: 11     Fields:    Translation:Cells
    35. miR-429-3p/LPIN1 Axis Promotes Chicken Abdominal Fat Deposition via PPARγ Pathway. Front Cell Dev Biol. 2020; 8:595637. Chao X, Guo L, Wang Q, Huang W, Liu M, Luan K, Jiang J, Lin S, Nie Q, Luo W, Zhang X, Luo Q. PMID: 33425901; PMCID: PMC7793751.
      View in: PubMed   Mentions: 2  
    36. Murine interfollicular epidermal differentiation is gradualistic with GRHL3 controlling progression from stem to transition cell states. Nat Commun. 2020 10 28; 11(1):5434. Lin Z, Jin S, Chen J, Li Z, Lin Z, Tang L, Nie Q, Andersen B. PMID: 33116143; PMCID: PMC7595230.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    37. Divergent Resistance Mechanisms to Immunotherapy Explain Responses in Different Skin Cancers. Cancers (Basel). 2020 Oct 13; 12(10). Dollinger E, Bergman D, Zhou P, Atwood SX, Nie Q. PMID: 33065980; PMCID: PMC7599806.
      View in: PubMed   Mentions: 4  
    38. Inference and multiscale model of epithelial-to-mesenchymal transition via single-cell transcriptomic data. Nucleic Acids Res. 2020 09 25; 48(17):9505-9520. Sha Y, Wang S, Zhou P, Nie Q. PMID: 32870263; PMCID: PMC7515733.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansAnimalsCells
    39. Single cell transcriptomics of human epidermis identifies basal stem cell transition states. Nat Commun. 2020 08 25; 11(1):4239. Wang S, Drummond ML, Guerrero-Juarez CF, Tarapore E, MacLean AL, Stabell AR, Wu SC, Gutierrez G, That BT, Benavente CA, Nie Q, Atwood SX. PMID: 32843640; PMCID: PMC7447770.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansCells
    40. Scaling a Dpp Morphogen Gradient through Feedback Control of Receptors and Co-receptors. Dev Cell. 2020 06 22; 53(6):724-739.e14. Zhu Y, Qiu Y, Chen W, Nie Q, Lander AD. PMID: 32574592; PMCID: PMC7437929.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    41. Inferring spatial and signaling relationships between cells from single cell transcriptomic data. Nat Commun. 2020 04 29; 11(1):2084. Cang Z, Nie Q. PMID: 32350282; PMCID: PMC7190659.
      View in: PubMed   Mentions: 77     Fields:    Translation:AnimalsCells
    42. Defining Epidermal Basal Cell States during Skin Homeostasis and Wound Healing Using Single-Cell Transcriptomics. Cell Rep. 2020 03 17; 30(11):3932-3947.e6. Haensel D, Jin S, Sun P, Cinco R, Dragan M, Nguyen Q, Cang Z, Gong Y, Vu R, MacLean AL, Kessenbrock K, Gratton E, Nie Q, Dai X. PMID: 32187560; PMCID: PMC7218802.
      View in: PubMed   Mentions: 60     Fields:    Translation:AnimalsCells
    43. An array of 60,000 antibodies for proteome-scale antibody generation and target discovery. Sci Adv. 2020 03; 6(11):eaax2271. Wang Z, Li Y, Hou B, Pronobis MI, Wang M, Wang Y, Cheng G, Weng W, Wang Y, Tang Y, Xu X, Pan R, Lin F, Wang N, Chen Z, Wang S, Ma LZ, Li Y, Huang D, Jiang L, Wang Z, Zeng W, Zhang Y, Du X, Lin Y, Li Z, Xia Q, Geng J, Dai H, Yu Y, Zhao XD, Yuan Z, Yan J, Nie Q, Zhang X, Wang K, Chen F, Zhang Q, Zhu Y, Zheng S, Poss KD, Tao SC, Meng X. PMID: 32195335; PMCID: PMC7065887.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    44. Circadian control of interferon-sensitive gene expression in murine skin. Proc Natl Acad Sci U S A. 2020 03 17; 117(11):5761-5771. Greenberg EN, Marshall ME, Jin S, Venkatesh S, Dragan M, Tsoi LC, Gudjonsson JE, Nie Q, Takahashi JS, Andersen B. PMID: 32132203; PMCID: PMC7084068.
      View in: PubMed   Mentions: 18     Fields:    Translation:Animals
    45. Epithelial Migration and Non-adhesive Periderm Are Required for Digit Separation during Mammalian Development. Dev Cell. 2020 03 23; 52(6):764-778.e4. Kashgari G, Meinecke L, Gordon W, Ruiz B, Yang J, Ma AL, Xie Y, Ho H, Plikus MV, Nie Q, Jester JV, Andersen B. PMID: 32109382; PMCID: PMC8237330.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    46. Regulatory feedback on receptor and non-receptor synthesis for robust signaling. Dev Dyn. 2020 03; 249(3):383-409. Lander AD, Nie Q, Sanchez-Tapia C, Simonyan A, Wan FYM. PMID: 32034817.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    47. scAI: an unsupervised approach for the integrative analysis of parallel single-cell transcriptomic and epigenomic profiles. Genome Biol. 2020 02 03; 21(1):25. Jin S, Zhang L, Nie Q. PMID: 32014031; PMCID: PMC6996200.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansCells
    48. A HYBRID METHOD FOR STIFF REACTION-DIFFUSION EQUATIONS. Discrete Continuous Dyn Syst Ser B. 2019 Dec; 24(12):6387-6417. Qiu Y, Chen W, Nie Q. PMID: 32405272; PMCID: PMC7220146.
      View in: PubMed   Mentions:
    49. CA1-projecting subiculum neurons facilitate object-place learning. Nat Neurosci. 2019 11; 22(11):1857-1870. Sun Y, Jin S, Lin X, Chen L, Qiao X, Jiang L, Zhou P, Johnston KG, Golshani P, Nie Q, Holmes TC, Nitz DA, Xu X. PMID: 31548723; PMCID: PMC6819262.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    50. Equal opportunities in stemness. Nat Cell Biol. 2019 08; 21(8):921-923. Nie Q, Plikus MV. PMID: 31358967; PMCID: PMC7962673.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    51. STOCHASTIC DYNAMICS OF CELL LINEAGE IN TISSUE HOMEOSTASIS. Discrete Continuous Dyn Syst Ser B. 2019 Aug; 24(8):3971-3994. Qiu Y, Chen W, Nie Q. PMID: 32269502; PMCID: PMC7141575.
      View in: PubMed   Mentions: 1  
    52. Cell lineage and communication network inference via optimization for single-cell transcriptomics. Nucleic Acids Res. 2019 06 20; 47(11):e66. Wang S, Karikomi M, MacLean AL, Nie Q. PMID: 30923815; PMCID: PMC6582411.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansAnimals
    53. A multiscale hybrid mathematical model of epidermal-dermal interactions during skin wound healing. Exp Dermatol. 2019 04; 28(4):493-502. Wang Y, Guerrero-Juarez CF, Qiu Y, Du H, Chen W, Figueroa S, Plikus MV, Nie Q. PMID: 30801791; PMCID: PMC6561509.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    54. Identification of a novel antisense RNA that regulates growth hormone receptor expression in chickens. RNA Biol. 2019 05; 16(5):626-638. Lin S, Zhang Z, Xie T, Hu B, Ruan Z, Zhang L, Li C, Li C, Luo W, Nie Q, Zhang X. PMID: 30764709; PMCID: PMC6546403.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    55. Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds. Nat Commun. 2019 02 08; 10(1):650. Guerrero-Juarez CF, Dedhia PH, Jin S, Ruiz-Vega R, Ma D, Liu Y, Yamaga K, Shestova O, Gay DL, Yang Z, Kessenbrock K, Nie Q, Pear WS, Cotsarelis G, Plikus MV. PMID: 30737373; PMCID: PMC6368572.
      View in: PubMed   Mentions: 153     Fields:    Translation:AnimalsCells
    56. Intermediate cell states in epithelial-to-mesenchymal transition. Phys Biol. 2019 01 18; 16(2):021001. Sha Y, Haensel D, Gutierrez G, Du H, Dai X, Nie Q. PMID: 30560804; PMCID: PMC6602058.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansAnimalsCells
    57. Transcriptomics reveals complex kinetics of dorsal-ventral patterning gene expression in the mandibular arch. Genesis. 2019 01; 57(1):e23275. Sharma PP, MacLean AL, Meinecke L, Clouthier DE, Nie Q, Schilling TF. PMID: 30561090; PMCID: PMC6677562.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    58. lncRNA-Six1 Is a Target of miR-1611 that Functions as a ceRNA to Regulate Six1 Protein Expression and Fiber Type Switching in Chicken Myogenesis. Cells. 2018 Dec 04; 7(12). Ma M, Cai B, Jiang L, Abdalla BA, Li Z, Nie Q, Zhang X. PMID: 30518151; PMCID: PMC6315877.
      View in: PubMed   Mentions: 26     Fields:    
    59. Modeling craniofacial development reveals spatiotemporal constraints on robust patterning of the mandibular arch. PLoS Comput Biol. 2018 11; 14(11):e1006569. Meinecke L, Sharma PP, Du H, Zhang L, Nie Q, Schilling TF. PMID: 30481168; PMCID: PMC6258504.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    60. An Ovol2-Zeb1 transcriptional circuit regulates epithelial directional migration and proliferation. EMBO Rep. 2019 01; 20(1). Haensel D, Sun P, MacLean AL, Ma X, Zhou Y, Stemmler MP, Brabletz S, Berx G, Plikus MV, Nie Q, Brabletz T, Dai X. PMID: 30413481; PMCID: PMC6322385.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    61. Stem cells: a window of opportunity in low-dimensional EMT space. Oncotarget. 2018 Aug 07; 9(61):31790-31791. Nie Q. PMID: 30159119; PMCID: PMC6112763.
      View in: PubMed   Mentions: 5     Fields:    
    62. Feed conversion ratio, residual feed intake and cholecystokinin type A receptor gene polymorphisms are associated with feed intake and average daily gain in a Chinese local chicken population. J Anim Sci Biotechnol. 2018; 9:50. Yi Z, Li X, Luo W, Xu Z, Ji C, Zhang Y, Nie Q, Zhang D, Zhang X. PMID: 29942508; PMCID: PMC6000933.
      View in: PubMed   Mentions: 15  
    63. Characterization of microRNA and mRNA expression profiles in skin tissue between early-feathering and late-feathering chickens. BMC Genomics. 2018 May 25; 19(1):399. Fang G, Jia X, Li H, Tan S, Nie Q, Yu H, Yang Y. PMID: 29801437; PMCID: PMC5970437.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    64. c-Myc inhibits myoblast differentiation and promotes myoblast proliferation and muscle fibre hypertrophy by regulating the expression of its target genes, miRNAs and lincRNAs. Cell Death Differ. 2019 03; 26(3):426-442. Luo W, Chen J, Li L, Ren X, Cheng T, Lu S, Lawal RA, Nie Q, Zhang X, Hanotte O. PMID: 29786076; PMCID: PMC6370811.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    65. Mean-Independent Noise Control of Cell Fates via Intermediate States. iScience. 2018 May 25; 3:11-20. Rackauckas C, Schilling T, Nie Q. PMID: 30428314; PMCID: PMC6137274.
      View in: PubMed   Mentions: 6  
    66. Exploring intermediate cell states through the lens of single cells. Curr Opin Syst Biol. 2018 Jun; 9:32-41. MacLean AL, Hong T, Nie Q. PMID: 30450444; PMCID: PMC6238957.
      View in: PubMed   Mentions: 25  
    67. miRNA-223 upregulated by MYOD inhibits myoblast proliferation by repressing IGF2 and facilitates myoblast differentiation by inhibiting ZEB1. Cell Death Dis. 2017 10 05; 8(10):e3094. Li G, Luo W, Abdalla BA, Ouyang H, Yu J, Hu F, Nie Q, Zhang X. PMID: 28981085; PMCID: PMC5682648.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    68. Chicken CCDC152 shares an NFYB-regulated bidirectional promoter with a growth hormone receptor antisense transcript and inhibits cells proliferation and migration. Oncotarget. 2017 Oct 13; 8(48):84039-84053. Lin S, Luo W, Jiang M, Luo W, Abdalla BA, Nie Q, Zhang L, Zhang X. PMID: 29137403; PMCID: PMC5663575.
      View in: PubMed   Mentions: 3     Fields:    
    69. A multi-scale model for hair follicles reveals heterogeneous domains driving rapid spatiotemporal hair growth patterning. Elife. 2017 07 11; 6. Wang Q, Oh JW, Lee HL, Dhar A, Peng T, Ramos R, Guerrero-Juarez CF, Wang X, Zhao R, Cao X, Le J, Fuentes MA, Jocoy SC, Rossi AR, Vu B, Pham K, Wang X, Mali NM, Park JM, Choi JH, Lee H, Legrand JMD, Kandyba E, Kim JC, Kim M, Foley J, Yu Z, Kobielak K, Andersen B, Khosrotehrani K, Nie Q, Plikus MV. PMID: 28695824; PMCID: PMC5610035.
      View in: PubMed   Mentions: 22     Fields:    Translation:Animals
    70. Lower Expression of SLC27A1 Enhances Intramuscular Fat Deposition in Chicken via Down-Regulated Fatty Acid Oxidation Mediated by CPT1A. Front Physiol. 2017; 8:449. Qiu F, Xie L, Ma JE, Luo W, Zhang L, Chao Z, Chen S, Nie Q, Lin Z, Zhang X. PMID: 28706492; PMCID: PMC5489693.
      View in: PubMed   Mentions: 27  
    71. A mathematical model of mechanotransduction reveals how mechanical memory regulates mesenchymal stem cell fate decisions. BMC Syst Biol. 2017 May 16; 11(1):55. Peng T, Liu L, MacLean AL, Wong CW, Zhao W, Nie Q. PMID: 28511648; PMCID: PMC5434622.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    72. Cell Sorting and Noise-Induced Cell Plasticity Coordinate to Sharpen Boundaries between Gene Expression Domains. PLoS Comput Biol. 2017 01; 13(1):e1005307. Wang Q, Holmes WR, Sosnik J, Schilling T, Nie Q. PMID: 28135279; PMCID: PMC5279720.
      View in: PubMed   Mentions: 12     Fields:    Translation:Animals
      View in: PubMed   Mentions: 6  
    74. Chicken GHR natural antisense transcript regulates GHR mRNA in LMH cells. Oncotarget. 2016 Nov 08; 7(45):73607-73617. Zhang L, Lin S, An L, Ma J, Qiu F, Jia R, Nie Q, Zhang D, Luo Q, Li T, Wang Z, Zhang X. PMID: 27713155; PMCID: PMC5342002.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    75. Controlling Stochasticity in Epithelial-Mesenchymal Transition Through Multiple Intermediate Cellular States. Discrete Continuous Dyn Syst Ser B. 2016 Sep; 21(7):2275-2291. Ta CH, Nie Q, Hong T. PMID: 29497351; PMCID: PMC5828240.
      View in: PubMed   Mentions: 11  
    76. A self-enhanced transport mechanism through long noncoding RNAs for X chromosome inactivation. Sci Rep. 2016 08 16; 6:31517. Li C, Hong T, Webb CH, Karner H, Sun S, Nie Q. PMID: 27527711; PMCID: PMC4985753.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    77. Combination analysis of genome-wide association and transcriptome sequencing of residual feed intake in quality chickens. BMC Genomics. 2016 08 09; 17:594. Xu Z, Ji C, Zhang Y, Zhang Z, Nie Q, Xu J, Zhang D, Zhang X. PMID: 27506765; PMCID: PMC4979145.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    78. Modelling of Yeast Mating Reveals Robustness Strategies for Cell-Cell Interactions. PLoS Comput Biol. 2016 07; 12(7):e1004988. Chen W, Nie Q, Yi TM, Chou CS. PMID: 27404800; PMCID: PMC4942089.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    79. Quantifying the landscape and kinetic paths for epithelial-mesenchymal transition from a core circuit. Phys Chem Chem Phys. 2016 Jul 21; 18(27):17949-56. Li C, Hong T, Nie Q. PMID: 27328302; PMCID: PMC4948291.
      View in: PubMed   Mentions: 26     Fields:    Translation:Humans
    80. Visualizing retinoic acid morphogen gradients. Methods Cell Biol. 2016; 133:139-63. Schilling TF, Sosnik J, Nie Q. PMID: 27263412; PMCID: PMC4933793.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    81. Noise modulation in retinoic acid signaling sharpens segmental boundaries of gene expression in the embryonic zebrafish hindbrain. Elife. 2016 Apr 12; 5:e14034. Sosnik J, Zheng L, Rackauckas CV, Digman M, Gratton E, Nie Q, Schilling TF. PMID: 27067377; PMCID: PMC4829421.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    82. Semi-permeable Diffusion Barriers Enhance Patterning Robustness in the C. elegans Germline. Dev Cell. 2015 Nov 23; 35(4):405-17. Cinquin A, Zheng L, Taylor PH, Paz A, Zhang L, Chiang M, Snow JJ, Nie Q, Cinquin O. PMID: 26609956; PMCID: PMC4694723.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    83. An Ovol2-Zeb1 Mutual Inhibitory Circuit Governs Bidirectional and Multi-step Transition between Epithelial and Mesenchymal States. PLoS Comput Biol. 2015 Nov; 11(11):e1004569. Hong T, Watanabe K, Ta CH, Villarreal-Ponce A, Nie Q, Dai X. PMID: 26554584; PMCID: PMC4640575.
      View in: PubMed   Mentions: 127     Fields:    Translation:HumansAnimalsCells
    84. The Interplay between Wnt Mediated Expansion and Negative Regulation of Growth Promotes Robust Intestinal Crypt Structure and Homeostasis. PLoS Comput Biol. 2015 Aug; 11(8):e1004285. Du H, Nie Q, Holmes WR. PMID: 26288152; PMCID: PMC4543550.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    85. An Integration Factor Method for Stochastic and Stiff Reaction-Diffusion Systems. J Comput Phys. 2015 Aug 15; 295:505-522. Ta C, Wang D, Nie Q. PMID: 25983341; PMCID: PMC4430728.
      View in: PubMed   Mentions: 1  
    86. Semi-implicit Integration Factor Methods on Sparse Grids for High-Dimensional Systems. J Comput Phys. 2015 Jul 01; 292:43-55. Wang D, Chen W, Nie Q. PMID: 25897178; PMCID: PMC4400671.
      View in: PubMed   Mentions: 1  
    87. Semi-adaptive response and noise attenuation in bone morphogenetic protein signalling. J R Soc Interface. 2015 Jun 06; 12(107). Hong T, Fung ES, Zhang L, Huynh G, Monuki ES, Nie Q. PMID: 25972436; PMCID: PMC4590514.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    88. A Systematic Analysis on mRNA and MicroRNA Expression in Runting and Stunting Chickens. PLoS One. 2015; 10(5):e0127342. Zhang L, Li Y, Xie X, Xu H, Xu Z, Ma J, Li B, Lin S, Nie Q, Luo Q, Zhang X. PMID: 26010155; PMCID: PMC4444097.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    89. Computational modelling of epidermal stratification highlights the importance of asymmetric cell division for predictable and robust layer formation. J R Soc Interface. 2014 Oct 06; 11(99). Gord A, Holmes WR, Dai X, Nie Q. PMID: 25100322; PMCID: PMC4233746.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    90. Transcriptional mechanisms link epithelial plasticity to adhesion and differentiation of epidermal progenitor cells. Dev Cell. 2014 Apr 14; 29(1):47-58. Lee B, Villarreal-Ponce A, Fallahi M, Ovadia J, Sun P, Yu QC, Ito S, Sinha S, Nie Q, Dai X. PMID: 24735878; PMCID: PMC4153751.
      View in: PubMed   Mentions: 61     Fields:    Translation:AnimalsCells
    91. Interactions and tradeoffs between cell recruitment, proliferation, and differentiation affect CNS regeneration. Biophys J. 2014 Apr 01; 106(7):1528-36. Holmes WR, Nie Q. PMID: 24703314; PMCID: PMC3976526.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    92. DNA methylome in spleen of avian pathogenic Escherichia coli-challenged broilers and integration with mRNA expression. Sci Rep. 2014 Mar 06; 4:4299. Xu H, Zhu X, Hu Y, Li Z, Zhang X, Nie Q, Nolan LK, Lamont SJ. PMID: 24599154; PMCID: PMC3944351.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    93. Array-representation Integration Factor Method for High-dimensional Systems. J Comput Phys. 2014 Feb 01; 258. Wang D, Zhang L, Nie Q. PMID: 24415797; PMCID: PMC3886925.
      View in: PubMed   Mentions: 3  
    94. Low-rank regularization for learning gene expression programs. PLoS One. 2013; 8(12):e82146. Ye G, Tang M, Cai JF, Nie Q, Xie X. PMID: 24358148; PMCID: PMC3866120.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    95. Noise attenuation in the ON and OFF states of biological switches. ACS Synth Biol. 2013 Oct 18; 2(10):587-93. Chen M, Wang L, Liu CC, Nie Q. PMID: 23768065; PMCID: PMC3805451.
      View in: PubMed   Mentions: 15     Fields:    
    96. Numerical Methods for Two-Dimensional Stem Cell Tissue Growth. J Sci Comput. 2014; 58:149-175. Ovadia J, Nie Q. PMID: 24415847; PMCID: PMC3883546.
      View in: PubMed   Mentions: 2  
    97. MicroRNA profile analysis on duck feather follicle and skin with high-throughput sequencing technology. Gene. 2013 Apr 25; 519(1):77-81. Zhang L, Nie Q, Su Y, Xie X, Luo W, Jia X, Zhang X. PMID: 23384715.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    98. Stem cell niche structure as an inherent cause of undulating epithelial morphologies. Biophys J. 2013 Jan 08; 104(1):237-46. Ovadia J, Nie Q. PMID: 23332076; PMCID: PMC3540249.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    99. Dynamics and precision in retinoic acid morphogen gradients. Curr Opin Genet Dev. 2012 Dec; 22(6):562-9. Schilling TF, Nie Q, Lander AD. PMID: 23266215; PMCID: PMC3790664.
      View in: PubMed   Mentions: 53     Fields:    Translation:AnimalsCells
    100. External noise control in inherently stochastic biological systems. J Math Phys. 2012 Nov; 53(11):115616. Zheng L, Chen M, Nie Q. PMID: 23213267; PMCID: PMC3505197.
      View in: PubMed   Mentions: 6  
    101. A reaction-diffusion mechanism influences cell lineage progression as a basis for formation, regeneration, and stability of intestinal crypts. BMC Syst Biol. 2012 Jul 31; 6:93. Zhang L, Lander AD, Nie Q. PMID: 22849824; PMCID: PMC3434027.
      View in: PubMed   Mentions: 22     Fields:    Translation:Cells
    102. Protein scaffolds can enhance the bistability of multisite phosphorylation systems. PLoS Comput Biol. 2012; 8(6):e1002551. Chan C, Liu X, Wang L, Bardwell L, Nie Q, Enciso G. PMID: 22737061; PMCID: PMC3380838.
      View in: PubMed   Mentions: 19     Fields:    Translation:Cells
    103. Cellular retinoic acid-binding proteins are essential for hindbrain patterning and signal robustness in zebrafish. Development. 2012 Jun; 139(12):2150-5. Cai AQ, Radtke K, Linville A, Lander AD, Nie Q, Schilling TF. PMID: 22619388; PMCID: PMC3357909.
      View in: PubMed   Mentions: 32     Fields:    Translation:AnimalsCells
    104. A Robust and Efficient Method for Steady State Patterns in Reaction-Diffusion Systems. J Comput Phys. 2012 Jun 01; 231(15):5062-5077. Lo WC, Chen L, Wang M, Nie Q. PMID: 22773849; PMCID: PMC3389814.
      View in: PubMed   Mentions: 4  
    105. The GTPase activating Rap/RanGAP domain-like 1 gene is associated with chicken reproductive traits. PLoS One. 2012; 7(4):e33851. Shen X, Zeng H, Xie L, He J, Li J, Xie X, Luo C, Xu H, Zhou M, Nie Q, Zhang X. PMID: 22496769; PMCID: PMC3322132.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    106. Free extracellular diffusion creates the Dpp morphogen gradient of the Drosophila wing disc. Curr Biol. 2012 Apr 24; 22(8):668-75. Zhou S, Lo WC, Suhalim JL, Digman MA, Gratton E, Nie Q, Lander AD. PMID: 22445299; PMCID: PMC3338872.
      View in: PubMed   Mentions: 66     Fields:    Translation:AnimalsCells
    107. Noise drives sharpening of gene expression boundaries in the zebrafish hindbrain. Mol Syst Biol. 2012; 8:613. Zhang L, Radtke K, Zheng L, Cai AQ, Schilling TF, Nie Q. PMID: 23010996; PMCID: PMC3472692.
      View in: PubMed   Mentions: 40     Fields:    Translation:AnimalsCells
    108. Noise filtering tradeoffs in spatial gradient sensing and cell polarization response. BMC Syst Biol. 2011 Dec 13; 5:196. Chou CS, Bardwell L, Nie Q, Yi TM. PMID: 22166067; PMCID: PMC3268761.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    109. Mathematical analysis of steady-state solutions in compartment and continuum models of cell polarization. Math Biosci Eng. 2011 Oct 01; 8(4):1135-68. Zheng Z, Chou CS, Yi TM, Nie Q. PMID: 21936604; PMCID: PMC3806509.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    110. Operator Splitting Implicit Integration Factor Methods for Stiff Reaction-Diffusion-Advection Systems. J Comput Phys. 2011 Jul; 230(15):5996-6009. Zhao S, Ovadia J, Liu X, Zhang YT, Nie Q. PMID: 21666863; PMCID: PMC3109754.
      View in: PubMed   Mentions: 5  
    111. Size-normalized Robustness of Dpp Gradient in Drosophila Wing Imaginal Disc. J Mech Mater Struct. 2011 Jan 01; 6(1-4):321-350. Lander AD, Nie Q, Vargas B, Wan FY. PMID: 21841941; PMCID: PMC3154743.
      View in: PubMed   Mentions: 10  
    112. Ultrasensitive responses and specificity in cell signaling. BMC Syst Biol. 2010 Aug 25; 4:119. Haney S, Bardwell L, Nie Q. PMID: 20735856; PMCID: PMC2940771.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    113. Integrative multicellular biological modeling: a case study of 3D epidermal development using GPU algorithms. BMC Syst Biol. 2010 Aug 09; 4:107. Christley S, Lee B, Dai X, Nie Q. PMID: 20696053; PMCID: PMC2936904.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    114. A critical quantity for noise attenuation in feedback systems. PLoS Comput Biol. 2010 Apr 29; 6(4):e1000764. Wang L, Xin J, Nie Q. PMID: 20442870; PMCID: PMC2861702.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    115. Incorporating existing network information into gene network inference. PLoS One. 2009 Aug 27; 4(8):e6799. Christley S, Nie Q, Xie X. PMID: 19710931; PMCID: PMC2729382.
      View in: PubMed   Mentions: 19     Fields:    Translation:Humans
    116. Ovol2 suppresses cell cycling and terminal differentiation of keratinocytes by directly repressing c-Myc and Notch1. J Biol Chem. 2009 Oct 16; 284(42):29125-35. Wells J, Lee B, Cai AQ, Karapetyan A, Lee WJ, Rugg E, Sinha S, Nie Q, Dai X. PMID: 19700410; PMCID: PMC2781457.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansAnimalsCells
    117. Localized Ectopic Expression of Dpp Receptors in a Drosophila Embryo. Stud Appl Math. 2009 Aug 01; 123(2):175-214. Lander AD, Nie Q, Wan FY, Zhang YT. PMID: 20160891; PMCID: PMC2774827.
      View in: PubMed   Mentions: 5  
    118. The measure of success: constraints, objectives, and tradeoffs in morphogen-mediated patterning. Cold Spring Harb Perspect Biol. 2009 Jul; 1(1):a002022. Lander AD, Lo WC, Nie Q, Wan FY. PMID: 20066078; PMCID: PMC2742077.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansAnimalsCells
    119. Multi-scale Modelling for Threshold Dependent Differentiation. Math Model Nat Phenom. 2009 Jun 01; 4(4):103-117. Cai AQ, Peng Y, Wells J, Dai X, Nie Q. PMID: 20622931; PMCID: PMC2900806.
      View in: PubMed   Mentions:
    120. Down-regulation of CXCR4 expression by SDF-KDEL in CD34(+) hematopoietic stem cells: An anti-human immunodeficiency virus strategy. J Virol Methods. 2009 Oct; 161(1):30-7. Zhang JC, Sun L, Nie QH, Huang CX, Jia ZS, Wang JP, Lian JQ, Li XH, Wang PZ, Zhang Y, Zhuang Y, Sun YT, Bai X. PMID: 19463855.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    121. Cell lineages and the logic of proliferative control. PLoS Biol. 2009 Jan 20; 7(1):e15. Lander AD, Gokoffski KK, Wan FY, Nie Q, Calof AL. PMID: 19166268; PMCID: PMC2628408.
      View in: PubMed   Mentions: 138     Fields:    Translation:AnimalsCells
    122. Feedback regulation in multistage cell lineages. Math Biosci Eng. 2009 Jan; 6(1):59-82. Lo WC, Chou CS, Gokoffski KK, Wan FY, Lander AD, Calof AL, Nie Q. PMID: 19292508; PMCID: PMC2756546.
      View in: PubMed   Mentions: 58     Fields:    Translation:HumansAnimalsCells
    123. Robust spatial sensing of mating pheromone gradients by yeast cells. PLoS One. 2008; 3(12):e3865. Moore TI, Chou CS, Nie Q, Jeon NL, Yi TM. PMID: 19052645; PMCID: PMC2586657.
      View in: PubMed   Mentions: 54     Fields:    Translation:AnimalsCells
    124. Modeling robustness tradeoffs in yeast cell polarization induced by spatial gradients. PLoS One. 2008 Sep 01; 3(9):e3103. Chou CS, Nie Q, Yi TM. PMID: 21267054; PMCID: PMC3021495.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    125. Fus3-triggered Tec1 degradation modulates mating transcriptional output during the pheromone response. Mol Syst Biol. 2008; 4:212. Chou S, Zhao S, Song Y, Liu H, Nie Q. PMID: 18682702; PMCID: PMC2538907.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    126. Compact integration factor methods in high spatial dimensions. J Comput Phys. 2008; 227(10):5238-5255. Nie Q, Wan FY, Zhang YT, Liu XF. PMID: 19809596; PMCID: PMC2756762.
      View in: PubMed   Mentions: 9  
    127. Complex regulation of cyp26a1 creates a robust retinoic acid gradient in the zebrafish embryo. PLoS Biol. 2007 Nov; 5(11):e304. White RJ, Nie Q, Lander AD, Schilling TF. PMID: 18031199; PMCID: PMC2080651.
      View in: PubMed   Mentions: 117     Fields:    Translation:AnimalsCells
    128. Computational analysis of BMP gradients in dorsal-ventral patterning of the zebrafish embryo. J Theor Biol. 2007 Oct 21; 248(4):579-89. Zhang YT, Lander AD, Nie Q. PMID: 17673236; PMCID: PMC4151269.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    129. Toll-like receptor 4 siRNA attenuates LPS-induced secretion of inflammatory cytokines and chemokines by macrophages. J Infect. 2007 Jul; 55(1):e1-9. Xu Z, Huang CX, Li Y, Wang PZ, Ren GL, Chen CS, Shang FJ, Zhang Y, Liu QQ, Jia ZS, Nie QH, Sun YT, Bai XF. PMID: 17336389.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    130. Mathematical models of specificity in cell signaling. Biophys J. 2007 May 15; 92(10):3425-41. Bardwell L, Zou X, Nie Q, Komarova NL. PMID: 17325015; PMCID: PMC1853162.
      View in: PubMed   Mentions: 34     Fields:    Translation:Cells
    131. Wingless directly represses DPP morphogen expression via an armadillo/TCF/Brinker complex. PLoS One. 2007 Jan 03; 2(1):e142. Theisen H, Syed A, Nguyen BT, Lukacsovich T, Purcell J, Srivastava GP, Iron D, Gaudenz K, Nie Q, Wan FY, Waterman ML, Marsh JL. PMID: 17206277; PMCID: PMC1764032.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    132. Membrane-associated non-receptors and morphogen gradients. Bull Math Biol. 2007 Jan; 69(1):33-54. Lander AD, Nie Q, Wan FY. PMID: 17054000; PMCID: PMC1994248.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    133. A theoretical framework for specificity in cell signaling. Mol Syst Biol. 2005; 1:2005.0023. Komarova NL, Zou X, Nie Q, Bardwell L. PMID: 16729058; PMCID: PMC1681467.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    134. Spatially distributed morphogen production and morphogen gradient formation. Math Biosci Eng. 2005 Apr; 2(2):239-62. Lander AD, Nie Q, Wan FY. PMID: 20369921.
      View in: PubMed   Mentions: 19     Fields:    
    135. [The present and prospects of clinical diagnosis and treatment of severe acute respiratory syndrome]. Zhongguo Wei Zhong Bing Ji Jiu Yi Xue. 2003 Jul; 15(7):441-4. Cao YZ, Nie QH. PMID: 12857505.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    136. Nonlinear simulation of tumor growth. J Math Biol. 2003 Mar; 46(3):191-224. Cristini V, Lowengrub J, Nie Q. PMID: 12728333.
      View in: PubMed   Mentions: 74     Fields:    Translation:HumansAnimals
    137. Methodologic research on TIMP-1, TIMP-2 detection as a new diagnostic index for hepatic fibrosis and its significance. World J Gastroenterol. 2002 Apr; 8(2):282-7. Nie QH, Cheng YQ, Xie YM, Zhou YX, Bai XG, Cao YZ. PMID: 11925608; PMCID: PMC4658367.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    Qing's Networks
    Concepts (400)
    Derived automatically from this person's publications.
    Co-Authors (35)
    People in Profiles who have published with this person.
    Similar People (60)
    People who share similar concepts with this person.