Ken Won-Young Cho

Title(s)Professor, Developmental & Cell Biology
SchoolSchool of Biological Sciences
Address4400 Natural Sciences II
Zot 2300
Irvine CA 92697
Phone(949) 824-7950, 4067
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    1. Foxh1 engages in chromatin regulation revealed by protein interactome analyses. Dev Growth Differ. 2022 Jul 18. Zhou JJ, Pham PD, Han H, Wang W, Cho KWY. PMID: 35848281.
      View in: PubMed   Mentions:    Fields:    
    2. Uncovering the mesendoderm gene regulatory network through multi-omic data integration. Cell Rep. 2022 02 15; 38(7):110364. Jansen C, Paraiso KD, Zhou JJ, Blitz IL, Fish MB, Charney RM, Cho JS, Yasuoka Y, Sudou N, Bright AR, Wlizla M, Veenstra GJC, Taira M, Zorn AM, Mortazavi A, Cho KWY. PMID: 35172134; PMCID: PMC8917868.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    3. The Hippo pathway kinases LATS1 and LATS2 attenuate cellular responses to heavy metals through phosphorylating MTF1. Nat Cell Biol. 2022 01; 24(1):74-87. Han H, Nakaoka HJ, Hofmann L, Zhou JJ, Yu C, Zeng L, Nan J, Seo G, Vargas RE, Yang B, Qi R, Bardwell L, Fishman DA, Cho KWY, Huang L, Luo R, Warrior R, Wang W. PMID: 35027733; PMCID: PMC9022944.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    4. Control of zygotic genome activation in Xenopus. Curr Top Dev Biol. 2021; 145:167-204. Blitz IL, Cho KWY. PMID: 34074529.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    5. Foxh1/Nodal Defines Context-Specific Direct Maternal Wnt/β-Catenin Target Gene Regulation in Early Development. iScience. 2020 Jul 24; 23(7):101314. Afouda BA, Nakamura Y, Shaw S, Charney RM, Paraiso KD, Blitz IL, Cho KWY, Hoppler S. PMID: 32650116; PMCID: PMC7347983.
      View in: PubMed   Mentions: 3  
    6. Genomics Methods for Xenopus Embryos and Tissues. Cold Spring Harb Protoc. 2020 05 01; 2020(5):097915. Gilchrist MJ, Cho KWY, Veenstra GJC. PMID: 32123020; PMCID: PMC7337993.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    7. Early Xenopus gene regulatory programs, chromatin states, and the role of maternal transcription factors. Curr Top Dev Biol. 2020; 139:35-60. Paraiso KD, Cho JS, Yong J, Cho KWY. PMID: 32450966.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    8. Transcriptomics and Proteomics Methods for Xenopus Embryos and Tissues. Cold Spring Harb Protoc. 2020 02 03; 2020(2):098350. Gilchrist MJ, Veenstra GJC, Cho KWY. PMID: 31772075; PMCID: PMC7362671.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    9. Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation. Cell Rep. 2019 06 04; 27(10):2962-2977.e5. Paraiso KD, Blitz IL, Coley M, Cheung J, Sudou N, Taira M, Cho KWY. PMID: 31167141; PMCID: PMC6610736.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    10. Morpholinos Do Not Elicit an Innate Immune Response during Early Xenopus Embryogenesis. Dev Cell. 2019 05 20; 49(4):643-650.e3. Paraiso KD, Blitz IL, Zhou JJ, Cho KWY. PMID: 31112700; PMCID: PMC6599594.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    11. DNase-seq to Study Chromatin Accessibility in Early Xenopus tropicalis Embryos. Cold Spring Harb Protoc. 2019 04 01; 2019(4). Cho JS, Blitz IL, Cho KWY. PMID: 30131367; PMCID: PMC6556395.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    12. A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs. Semin Cell Dev Biol. 2017 06; 66:12-24. Charney RM, Paraiso KD, Blitz IL, Cho KWY. PMID: 28341363; PMCID: PMC5487371.
      View in: PubMed   Mentions: 14     Fields:    Translation:Animals
    13. Foxh1 Occupies cis-Regulatory Modules Prior to Dynamic Transcription Factor Interactions Controlling the Mesendoderm Gene Program. Dev Cell. 2017 03 27; 40(6):595-607.e4. Charney RM, Forouzmand E, Cho JS, Cheung J, Paraiso KD, Yasuoka Y, Takahashi S, Taira M, Blitz IL, Xie X, Cho KW. PMID: 28325473; PMCID: PMC5434453.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    14. A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo. Dev Biol. 2017 06 15; 426(2):409-417. Blitz IL, Paraiso KD, Patrushev I, Chiu WTY, Cho KWY, Gilchrist MJ. PMID: 27475627; PMCID: PMC5596316.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    15. Developmentally regulated long non-coding RNAs in Xenopus tropicalis. Dev Biol. 2017 06 15; 426(2):401-408. Forouzmand E, Owens NDL, Blitz IL, Paraiso KD, Khokha MK, Gilchrist MJ, Xie X, Cho KWY. PMID: 27418388; PMCID: PMC5233649.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    16. Leapfrogging: primordial germ cell transplantation permits recovery of CRISPR/Cas9-induced mutations in essential genes. Development. 2016 08 01; 143(15):2868-75. Blitz IL, Fish MB, Cho KW. PMID: 27385011; PMCID: PMC5004912.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    17. Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development. Cell Rep. 2016 Jan 26; 14(3):632-647. Owens NDL, Blitz IL, Lane MA, Patrushev I, Overton JD, Gilchrist MJ, Cho KWY, Khokha MK. PMID: 26774488; PMCID: PMC4731879.
      View in: PubMed   Mentions: 70     Fields:    Translation:AnimalsCells
    18. Analysis of in vivo single cell behavior by high throughput, human-in-the-loop segmentation of three-dimensional images. BMC Bioinformatics. 2015 Nov 25; 16:397. Chiang M, Hallman S, Cinquin A, de Mochel NR, Paz A, Kawauchi S, Calof AL, Cho KW, Fowlkes CC, Cinquin O. PMID: 26607933; PMCID: PMC4659165.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    19. Principles and mechanisms of regeneration in the mouse model for wound-induced hair follicle neogenesis. Regeneration (Oxf). 2015 Aug; 2(4):169-181. Wang X, Hsi TC, Guerrero-Juarez CF, Pham K, Cho K, McCusker CD, Monuki ES, Cho KW, Gay DL, Plikus MV. PMID: 26504521; PMCID: PMC4617665.
      View in: PubMed   Mentions: 25  
    20. Genome-wide view of TGFβ/Foxh1 regulation of the early mesendoderm program. Development. 2014 Dec; 141(23):4537-47. Chiu WT, Charney Le R, Blitz IL, Fish MB, Li Y, Biesinger J, Xie X, Cho KW. PMID: 25359723; PMCID: PMC4302925.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansAnimals
    21. BMP signaling is required for cell cleavage in preimplantation-mouse embryos. Dev Biol. 2015 Jan 01; 397(1):45-55. Reyes de Mochel NS, Luong M, Chiang M, Javier AL, Luu E, Toshihiko F, MacGregor GR, Cinquin O, Cho KW. PMID: 25446538; PMCID: PMC4309750.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    22. Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns. BMC Syst Biol. 2014 Jan 08; 8:3. Zheng Z, Christley S, Chiu WT, Blitz IL, Xie X, Cho KW, Nie Q. PMID: 24397936; PMCID: PMC3896677.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    23. Cas9-based genome editing in Xenopus tropicalis. Methods Enzymol. 2014; 546:355-75. Nakayama T, Blitz IL, Fish MB, Odeleye AO, Manohar S, Cho KW, Grainger RM. PMID: 25398349; PMCID: PMC4284096.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    24. Biallelic genome modification in F(0) Xenopus tropicalis embryos using the CRISPR/Cas system. Genesis. 2013 Dec; 51(12):827-34. Blitz IL, Biesinger J, Xie X, Cho KW. PMID: 24123579; PMCID: PMC4039559.
      View in: PubMed   Mentions: 94     Fields:    Translation:AnimalsCells
    25. Bmp indicator mice reveal dynamic regulation of transcriptional response. PLoS One. 2012; 7(9):e42566. Javier AL, Doan LT, Luong M, Reyes de Mochel NS, Sun A, Monuki ES, Cho KW. PMID: 22984405; PMCID: PMC3439458.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimalsCells
    26. A Bmp reporter with ultrasensitive characteristics reveals that high Bmp signaling is not required for cortical hem fate. PLoS One. 2012; 7(9):e44009. Doan LT, Javier AL, Furr NM, Nguyen KL, Cho KW, Monuki ES. PMID: 22984456; PMCID: PMC3439469.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    27. Enhancers. Wiley Interdiscip Rev Dev Biol. 2012 Jul-Aug; 1(4):469-78. Cho KW. PMID: 23801531; PMCID: PMC3979590.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    28. Combinatorial roles for BMPs and Endothelin 1 in patterning the dorsal-ventral axis of the craniofacial skeleton. Development. 2011 Dec; 138(23):5135-46. Alexander C, Zuniga E, Blitz IL, Wada N, Le Pabic P, Javidan Y, Zhang T, Cho KW, Crump JG, Schilling TF. PMID: 22031543; PMCID: PMC3210495.
      View in: PubMed   Mentions: 72     Fields:    Translation:AnimalsCells
    29. Opposing Nodal/Vg1 and BMP signals mediate axial patterning in embryos of the basal chordate amphioxus. Dev Biol. 2010 Aug 01; 344(1):377-89. Onai T, Yu JK, Blitz IL, Cho KW, Holland LZ. PMID: 20488174; PMCID: PMC4781670.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    30. Finding partners: how BMPs select their targets. Dev Dyn. 2009 Jun; 238(6):1321-31. Blitz IL, Cho KW. PMID: 19441058.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansAnimalsCells
    31. Identification of embryonic pancreatic genes using Xenopus DNA microarrays. Dev Dyn. 2009 Jun; 238(6):1455-66. Hayata T, Blitz IL, Iwata N, Cho KW. PMID: 19191222; PMCID: PMC4203858.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    32. Unc5B interacts with FLRT3 and Rnd1 to modulate cell adhesion in Xenopus embryos. PLoS One. 2009 May 29; 4(5):e5742. Karaulanov E, Böttcher RT, Stannek P, Wu W, Rau M, Ogata S, Cho KW, Niehrs C. PMID: 19492039; PMCID: PMC2683942.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    33. The tetraspanin Tm4sf3 is localized to the ventral pancreas and regulates fusion of the dorsal and ventral pancreatic buds. Development. 2009 Jun; 136(11):1791-800. Jarikji Z, Horb LD, Shariff F, Mandato CA, Cho KW, Horb ME. PMID: 19403659; PMCID: PMC2680106.
      View in: PubMed   Mentions: 18     Fields:    Translation:Animals
    34. TGF-beta signaling-mediated morphogenesis: modulation of cell adhesion via cadherin endocytosis. Genes Dev. 2007 Jul 15; 21(14):1817-31. Ogata S, Morokuma J, Hayata T, Kolle G, Niehrs C, Ueno N, Cho KW. PMID: 17639085; PMCID: PMC1920175.
      View in: PubMed   Mentions: 59     Fields:    Translation:AnimalsCells
    35. Xenopus cDNA microarray identification of genes with endodermal organ expression. Dev Dyn. 2007 Jun; 236(6):1633-49. Park EC, Hayata T, Cho KW, Han JK. PMID: 17474120.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    36. Dissection of organizer and animal pole explants from Xenopus laevis embryos and assembly of a cell adhesion assay. J Vis Exp. 2007; (3):187. Ogata S, Cho KW. PMID: 18978993; PMCID: PMC2535839.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    37. Plastic embedding and sectioning of Xenopus laevis embryos. J Vis Exp. 2007; (3):188. Ogata S, Kawauchi S, Calof A, Cho KW. PMID: 18978994; PMCID: PMC2535840.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    38. Xenopus glucose transporter 1 (xGLUT1) is required for gastrulation movement in Xenopus laevis. Int J Dev Biol. 2007; 51(3):183-90. Suzawa K, Yukita A, Hayata T, Goto T, Danno H, Michiue T, Cho KW, Asashima M. PMID: 17486538.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    39. Schnurri transcription factors from Drosophila and vertebrates can mediate Bmp signaling through a phylogenetically conserved mechanism. Development. 2006 Oct; 133(20):4025-34. Yao LC, Blitz IL, Peiffer DA, Phin S, Wang Y, Ogata S, Cho KW, Arora K, Warrior R. PMID: 17008448.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansAnimalsCells
    40. The Xfeb gene is directly upregulated by Zic1 during early neural development. Dev Dyn. 2006 Oct; 235(10):2817-27. Li S, Shin Y, Cho KW, Merzdorf CS. PMID: 16871635.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    41. Negative regulation of Hedgehog signaling by the cholesterogenic enzyme 7-dehydrocholesterol reductase. Development. 2006 Jun; 133(12):2395-405. Koide T, Hayata T, Cho KW. PMID: 16687448.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansAnimalsCells
    42. Grainyhead-like 3, a transcription factor identified in a microarray screen, promotes the specification of the superficial layer of the embryonic epidermis. Mech Dev. 2006 Sep; 123(9):702-18. Chalmers AD, Lachani K, Shin Y, Sherwood V, Cho KW, Papalopulu N. PMID: 16916602.
      View in: PubMed   Mentions: 22     Fields:    Translation:Animals
    43. Two modes of action by which Xenopus hairy2b establishes tissue demarcation in the Spemann-Mangold organizer. Int J Dev Biol. 2006; 50(5):463-71. Murato Y, Yamaguti M, Katamura M, Cho KW, Hashimoto C. PMID: 16586347.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    44. Xenopus hairy2b specifies anterior prechordal mesoderm identity within Spemann's organizer. Dev Dyn. 2005 Sep; 234(1):102-13. Yamaguti M, Cho KW, Hashimoto C. PMID: 16059909.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    45. Regulatory targets for transcription factor AP2 in Xenopus embryos. Dev Growth Differ. 2005 Aug; 47(6):403-13. Luo T, Zhang Y, Khadka D, Rangarajan J, Cho KW, Sargent TD. PMID: 16109038.
      View in: PubMed   Mentions: 13     Fields:    Translation:Animals
    46. Phylogenetic footprinting and genome scanning identify vertebrate BMP response elements and new target genes. Dev Biol. 2005 May 15; 281(2):210-26. von Bubnoff A, Peiffer DA, Blitz IL, Hayata T, Ogata S, Zeng Q, Trunnell M, Cho KW. PMID: 15893974.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansAnimalsCells
    47. Xenopus as a model system to study transcriptional regulatory networks. Proc Natl Acad Sci U S A. 2005 Apr 05; 102(14):4943-8. Koide T, Hayata T, Cho KW. PMID: 15795378; PMCID: PMC555977.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    48. Microarray-based identification of VegT targets in Xenopus. Mech Dev. 2005 Mar; 122(3):333-54. Taverner NV, Kofron M, Shin Y, Kabitschke C, Gilchrist MJ, Wylie C, Cho KW, Heasman J, Smith JC. PMID: 15763211.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    49. Global gene expression profiling and cluster analysis in Xenopus laevis. Mech Dev. 2005 Mar; 122(3):441-75. Baldessari D, Shin Y, Krebs O, König R, Koide T, Vinayagam A, Fenger U, Mochii M, Terasaka C, Kitayama A, Peiffer D, Ueno N, Eils R, Cho KW, Niehrs C. PMID: 15763214.
      View in: PubMed   Mentions: 19     Fields:    Translation:Animals
    50. Identification of neural genes using Xenopus DNA microarrays. Dev Dyn. 2005 Feb; 232(2):432-44. Shin Y, Kitayama A, Koide T, Peiffer DA, Mochii M, Liao A, Ueno N, Cho KW. PMID: 15614765.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    51. A Xenopus DNA microarray approach to identify novel direct BMP target genes involved in early embryonic development. Dev Dyn. 2005 Feb; 232(2):445-56. Peiffer DA, Von Bubnoff A, Shin Y, Kitayama A, Mochii M, Ueno N, Cho KW. PMID: 15614776.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    52. Global analysis of RAR-responsive genes in the Xenopus neurula using cDNA microarrays. Dev Dyn. 2005 Feb; 232(2):414-31. Arima K, Shiotsugu J, Niu R, Khandpur R, Martinez M, Shin Y, Koide T, Cho KW, Kitayama A, Ueno N, Chandraratna RA, Blumberg B. PMID: 15614783.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    53. Cloning and expression of an SH3 domain-containing protein (Xchef-1), a novel downstream target of activin/nodal signaling. Gene Expr Patterns. 2004 Oct; 4(6):719-24. Meek LM, Hayata T, Shin YC, Evinger AJ, Cho KW. PMID: 15465495.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    54. Twisted gastrulation loss-of-function analyses support its role as a BMP inhibitor during early Xenopus embryogenesis. Development. 2003 Oct; 130(20):4975-88. Blitz IL, Cho KW, Chang C. PMID: 12952901.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    55. Expression pattern of a basic helix-loop-helix transcription factor Xhairy2b during Xenopus laevis development. Dev Genes Evol. 2003 Aug; 213(8):407-11. Tsuji S, Cho KW, Hashimoto C. PMID: 12774230.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    56. Tob proteins enhance inhibitory Smad-receptor interactions to repress BMP signaling. Mech Dev. 2003 May; 120(5):629-37. Yoshida Y, von Bubnoff A, Ikematsu N, Blitz IL, Tsuzuku JK, Yoshida EH, Umemori H, Miyazono K, Yamamoto T, Cho KW. PMID: 12782279.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    57. Nodal signaling in Xenopus gastrulae is cell-autonomous and patterned by beta-catenin. Dev Biol. 2003 Jan 01; 253(1):125-38. Hashimoto-Partyka MK, Yuge M, Cho KW. PMID: 12490202.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    58. Microarray optimizations: increasing spot accuracy and automated identification of true microarray signals. Nucleic Acids Res. 2002 Jun 15; 30(12):e54. Tran PH, Peiffer DA, Shin Y, Meek LM, Brody JP, Cho KW. PMID: 12060692; PMCID: PMC117296.
      View in: PubMed   Mentions: 27     Fields:    Translation:Animals
    59. The role of a Williams-Beuren syndrome-associated helix-loop-helix domain-containing transcription factor in activin/nodal signaling. Genes Dev. 2002 Apr 01; 16(7):820-35. Ring C, Ogata S, Meek L, Song J, Ohta T, Miyazono K, Cho KW. PMID: 11937490; PMCID: PMC186325.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansAnimalsCells
    60. BMPs, Smads and metalloproteases: extracellular and intracellular modes of negative regulation. Curr Opin Genet Dev. 1998 Aug; 8(4):443-9. Cho KW, Blitz IL. PMID: 9729721.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
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