Whiteson, Katrine Liv

TitleAssistant Professor
InstitutionUniversity of California, Irvine
DepartmentMolecular Biology & Biochem
Address3236 McGaugh Hall
Zot 3900
CA 92697
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    1. Nusbaum DJ, Sun F, Ren J, Zhu Z, Ramsy N, Pervolarakis N, Kunde S, England W, Gao B, Fiehn O, Michail S, Whiteson K. Gut microbial and metabolomic profiles after fecal microbiota transplantation in pediatric ulcerative colitis patients. FEMS Microbiol Ecol. 2018 Jul 13. PMID: 30010747.
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    2. Wandro S, Osborne S, Enriquez C, Bixby C, Arrieta A, Whiteson K. The Microbiome and Metabolome of Preterm Infant Stool Are Personalized and Not Driven by Health Outcomes, Including Necrotizing Enterocolitis and Late-Onset Sepsis. mSphere. 2018 Jun 27; 3(3). PMID: 29875143.
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    3. Phan J, Gallagher T, Oliver A, England WE, Whiteson K. Fermentation products in the cystic fibrosis airways induce aggregation and dormancy-associated expression profiles in a CF clinical isolate of Pseudomonas aeruginosa. FEMS Microbiol Lett. 2018 May 01; 365(10). PMID: 29617986.
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    4. Gao B, Gallagher T, Zhang Y, Elbadawi-Sidhu M, Lai Z, Fiehn O, Whiteson K. Tracking Polymicrobial Metabolism in Cystic Fibrosis Airways: Pseudomonas aeruginosa Metabolism and Physiology Are Influenced by Rothia mucilaginosa-Derived Metabolites. mSphere. 2018 Apr 25; 3(2). PMID: 29695623.
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    5. Whiteson K. Vive la Persistence: Engineering Human Microbiomes in the 21st Century. mSystems. 2018 Mar-Apr; 3(2). PMID: 29657964.
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    6. Nguyen CQ, Thrift WJ, Bhattacharjee A, Ranjbar S, Gallagher T, Darvishzadeh-Varcheie M, Sanderson RN, Capolino F, Whiteson K, Baldi P, Hochbaum AI, Ragan R. Longitudinal Monitoring of Biofilm Formation via Robust Surface-Enhanced Raman Scattering Quantification of Pseudomonas aeruginosa-Produced Metabolites. ACS Appl Mater Interfaces. 2018 Apr 18; 10(15):12364-12373. PMID: 29589446.
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    7. Wandro S, Carmody L, Gallagher T, LiPuma JJ, Whiteson K. Making It Last: Storage Time and Temperature Have Differential Impacts on Metabolite Profiles of Airway Samples from Cystic Fibrosis Patients. mSystems. 2017 Nov-Dec; 2(6). PMID: 29202048.
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    8. Dutilh BE, Reyes A, Hall RJ, Whiteson K. Editorial: Virus Discovery by Metagenomics: The (Im)possibilities. Front Microbiol. 2017; 8:1710. PMID: 28943867.
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    9. Phan J, Meinardi S, Barletta B, Blake DR, Whiteson K. Stable isotope profiles reveal active production of VOCs from human-associated microbes. J Breath Res. 2017 Feb 06; 11(1):017101. PMID: 28070022.
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    10. Bos LD, Meinardi S, Blake D, Whiteson K. Bacteria in the airways of patients with cystic fibrosis are genetically capable of producing VOCs in breath. J Breath Res. 2016 12 17; 10(4):047103. PMID: 27991430.
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    11. Quinn RA, Whiteson K, Lim YW, Zhao J, Conrad D, LiPuma JJ, Rohwer F, Widder S. Ecological networking of cystic fibrosis lung infections. NPJ Biofilms Microbiomes. 2016; 2:4. PMID: 28649398.
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    12. Quinn RA, Lim YW, Mak TD, Whiteson K, Furlan M, Conrad D, Rohwer F, Dorrestein P. Metabolomics of pulmonary exacerbations reveals the personalized nature of cystic fibrosis disease. PeerJ. 2016; 4:e2174. PMID: 27602256; PMCID: PMC4991883.
    13. Quinn RA, Phelan VV, Whiteson K, Garg N, Bailey BA, Lim YW, Conrad DJ, Dorrestein PC, Rohwer FL. Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome. ISME J. 2016 06; 10(6):1483-98. PMID: 26623545.
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    14. Quinn RA, Whiteson K, Lim YW, Salamon P, Bailey B, Mienardi S, Sanchez SE, Blake D, Conrad D, Rohwer F. A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation. ISME J. 2015 Mar 17; 9(4):1024-38. PMID: 25514533; PMCID: PMC4817692.
    15. Quinn RA, Whiteson K, Lim YW, Salamon P, Bailey B, Mienardi S, Sanchez SE, Blake D, Conrad D, Rohwer F. A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation. ISME J. 2015 Mar 17; 9(4):1052. PMID: 25777574; PMCID: PMC4817711.
    16. Whiteson K, Lazarevic V, Tangomo-Bento M, Girard M, Maughan H, Pittet D, Francois P, Schrenzel J. Noma affected children from Niger have distinct oral microbial communities based on high-throughput sequencing of 16S rRNA gene fragments. PLoS Negl Trop Dis. 2014 Dec; 8(12):e3240. PMID: 25474262; PMCID: PMC4256271.
    17. Whiteson K, Bailey B, Bergkessel M, Conrad D, Delhaes L, Felts B, Harris JK, Hunter R, Lim YW, Maughan H, Quinn R, Salamon P, Sullivan J, Wagner BD, Rainey PB. The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography. Am J Respir Crit Care Med. 2014 Jun 01; 189(11):1309-15. PMID: 24702670; PMCID: PMC4098084.
    18. Quinn RA, Lim YW, Maughan H, Conrad D, Rohwer F, Whiteson K. Biogeochemical forces shape the composition and physiology of polymicrobial communities in the cystic fibrosis lung. MBio. 2014 Mar 18; 5(2):e00956-13. PMID: 24643867; PMCID: PMC3967525.
    19. Whiteson K, Hernandez D, Lazarevic V, Gaia N, Farinelli L, François P, Pilo P, Frey J, Schrenzel J. A genomic perspective on a new bacterial genus and species from the Alcaligenaceae family, Basilea psittacipulmonis. BMC Genomics. 2014 Mar 01; 15:169. PMID: 24581117; PMCID: PMC4028982.
    20. Whiteson K, Meinardi S, Lim YW, Schmieder R, Maughan H, Quinn R, Blake DR, Conrad D, Rohwer F. Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation. ISME J. 2014 Jun; 8(6):1247-58. PMID: 24401860; PMCID: PMC4030226.
    21. Lim YW, Schmieder R, Haynes M, Furlan M, Matthews TD, Whiteson K, Poole SJ, Hayes CS, Low DA, Maughan H, Edwards R, Conrad D, Rohwer F. Mechanistic model of Rothia mucilaginosa adaptation toward persistence in the CF lung, based on a genome reconstructed from metagenomic data. PLoS One. 2013; 8(5):e64285. PMID: 23737977; PMCID: PMC3667864.
    22. Barr JJ, Auro R, Furlan M, Whiteson K, Erb ML, Pogliano J, Stotland A, Wolkowicz R, Cutting AS, Doran KS, Salamon P, Youle M, Rohwer F. Bacteriophage adhering to mucus provide a non-host-derived immunity. Proc Natl Acad Sci U S A. 2013 Jun 25; 110(26):10771-6. PMID: 23690590; PMCID: PMC3696810.
    23. Reyes A, Semenkovich NP, Whiteson K, Rohwer F, Gordon JI. Going viral: next-generation sequencing applied to phage populations in the human gut. Nat Rev Microbiol. 2012 Sep; 10(9):607-17. PMID: 22864264; PMCID: PMC3596094.
    24. Bolivar I, Whiteson K, Stadelmann B, Baratti-Mayer D, Gizard Y, Mombelli A, Pittet D, Schrenzel J. Bacterial diversity in oral samples of children in niger with acute noma, acute necrotizing gingivitis, and healthy controls. PLoS Negl Trop Dis. 2012; 6(3):e1556. PMID: 22413030; PMCID: PMC3295795.
    25. Lazarevic V, Whiteson K, Gaïa N, Gizard Y, Hernandez D, Farinelli L, Osterås M, François P, Schrenzel J. Analysis of the salivary microbiome using culture-independent techniques. J Clin Bioinforma. 2012 Feb 02; 2:4. PMID: 22300522; PMCID: PMC3296672.
    26. Stenz L, Francois P, Whiteson K, Wolz C, Linder P, Schrenzel J. The CodY pleiotropic repressor controls virulence in gram-positive pathogens. FEMS Immunol Med Microbiol. 2011 Jul; 62(2):123-39. PMID: 21539625.
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    27. Lazarevic V, Whiteson K, Hernandez D, François P, Schrenzel J. Study of inter- and intra-individual variations in the salivary microbiota. BMC Genomics. 2010 Sep 28; 11:523. PMID: 20920195; PMCID: PMC2997015.
    28. Lazarevic V, Whiteson K, Huse S, Hernandez D, Farinelli L, Osterås M, Schrenzel J, François P. Metagenomic study of the oral microbiota by Illumina high-throughput sequencing. J Microbiol Methods. 2009 Dec; 79(3):266-71. PMID: 19796657; PMCID: PMC3568755.
    29. Whiteson K, Rice PA. Binding and catalytic contributions to site recognition by flp recombinase. J Biol Chem. 2008 Apr 25; 283(17):11414-23. PMID: 18276592; PMCID: PMC2431069.
    30. Whiteson K, Chen Y, Chopra N, Raymond AC, Rice PA. Identification of a potential general acid/base in the reversible phosphoryl transfer reactions catalyzed by tyrosine recombinases: Flp H305. Chem Biol. 2007 Feb; 14(2):121-9. PMID: 17317566; PMCID: PMC1857323.
    31. Grindley ND, Whiteson K, Rice PA. Mechanisms of site-specific recombination. Annu Rev Biochem. 2006; 75:567-605. PMID: 16756503.
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