Katrine Liv Whiteson

Title(s)Assistant Professor, Molecular Biology & Biochemistry
SchoolSchool of Biological Sciences
Address3236 McGaugh Hall
Zot 3900
Irvine CA 92697
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Sex-specific associations between AD genotype and the microbiome of human amyloid beta knock-in (hAβ-KI) mice. Alzheimers Dement. 2024 Apr 04. Dunham SJB, Avelar-Barragan J, Rothman JA, Adams ED, Faraci G, Forner S, Kawauchi S, Tenner AJ, Green KN, LaFerla FM, MacGregor GR, Mapstone M, Whiteson KL. PMID: 38572865.
      View in: PubMed   Mentions:    Fields:    
    2. A simple solid media assay for detection of synergy between bacteriophages and antibiotics. Microbiol Spectr. 2024 Mar 25; e0322123. Khong E, Oh JJ, Jimenez JM, Liu R, Dunham S, Monsibais A, Rhoads A, Ghatbale P, Garcia A, Cobián Güemes AG, Blanc AN, Chiu M, Kuo P, Proost M, Kline A, Aslam S, Schooley RT, Whiteson K, Fraley SI, Pride DT. PMID: 38526142.
      View in: PubMed   Mentions:    Fields:    
    3. The NUTRIENT Trial (NUTRitional Intervention among myEloproliferative Neoplasms): Results from a Randomized Phase I Pilot Study for Feasibility and Adherence. Cancer Res Commun. 2024 03 05; 4(3):660-670. Mendez Luque LF, Avelar-Barragan J, Nguyen H, Nguyen J, Soyfer EM, Liu J, Chen JH, Mehrotra N, Huang X, Kosiorek HE, Dueck A, Himstead A, Heide E, Lem M, El Alaoui K, Mas E, Scherber RM, Mesa RA, Whiteson KL, Odegaard A, Fleischman AG. PMID: 38391189; PMCID: PMC10913729.
      View in: PubMed   Mentions: Translation:HumansCTClinical Trials
    4. Host DNA depletion on frozen human respiratory samples enables successful metagenomic sequencing for microbiome studies. Res Sq. 2024 Jan 23. Kim M, Parrish RC, Shah VS, Ross M, Cormier J, Baig A, Huang CY, Brenner L, Neuringer I, Whiteson K, Harris JK, Willis AD, Lai PS. PMID: 38343829; PMCID: PMC10854296.
      View in: PubMed   Mentions:
    5. Melanoma and microbiota: Current understanding and future directions. Cancer Cell. 2024 01 08; 42(1):16-34. Routy B, Jackson T, Mählmann L, Baumgartner CK, Blaser M, Byrd A, Corvaia N, Couts K, Davar D, Derosa L, Hang HC, Hospers G, Isaksen M, Kroemer G, Malard F, McCoy KD, Meisel M, Pal S, Ronai Z, Segal E, Sepich-Poore GD, Shaikh F, Sweis RF, Trinchieri G, van den Brink M, Weersma RK, Whiteson K, Zhao L, McQuade J, Zarour H, Zitvogel L. PMID: 38157864.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    6. Characterizing the microbiome of patients with myeloproliferative neoplasms during a Mediterranean diet intervention. mBio. 2023 Oct 25; e0230823. Avelar-Barragan J, Mendez Luque LF, Nguyen J, Nguyen H, Odegaard AO, Fleischman AG, Whiteson KL. PMID: 37877698; PMCID: PMC10746218.
      View in: PubMed   Mentions:    Fields:    
    7. A Retrospective, Observational Study of 12 Cases of Expanded-Access Customized Phage Therapy: Production, Characteristics, and Clinical Outcomes. Clin Infect Dis. 2023 10 13; 77(8):1079-1091. Green SI, Clark JR, Santos HH, Weesner KE, Salazar KC, Aslam S, Campbell JW, Doernberg SB, Blodget E, Morris MI, Suh GA, Obeid K, Silveira FP, Filippov AA, Whiteson KL, Trautner BW, Terwilliger AL, Maresso A. PMID: 37279523; PMCID: PMC10573729.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    8. Influence of complement protein C1q or complement receptor C5aR1 on gut microbiota composition in wildtype and Alzheimer's mouse models. J Neuroinflammation. 2023 Sep 19; 20(1):211. Petrisko TJ, Gargus M, Chu SH, Selvan P, Whiteson KL, Tenner AJ. PMID: 37726739; PMCID: PMC10507976.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    9. The great divide: rhamnolipids mediate separation between P. aeruginosa and S. aureus. Front Cell Infect Microbiol. 2023; 13:1245874. Bru JL, Kasallis SJ, Chang R, Zhuo Q, Nguyen J, Pham P, Warren E, Whiteson K, Høyland-Kroghsbo NM, Limoli DH, Siryaporn A. PMID: 37780859; PMCID: PMC10540625.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    10. A simple solid media assay for detection of synergy between bacteriophages and antibiotics. bioRxiv. 2023 Aug 24. Khong E, Oh J, Jimenez JM, Liu R, Dunham S, Monsibais A, Rhoads A, Ghatbale P, Garcia A, Cobián Güemes AG, Blanc AN, Chiu M, Kuo P, Proost M, Kline A, Aslam S, Schooley RT, Whiteson K, Fraley SI, Pride DT. PMID: 37662290; PMCID: PMC10473724.
      View in: PubMed   Mentions:
    11. Oral microbial communities in children, caregivers, and associations with salivary biomeasures and environmental tobacco smoke exposure. mSystems. 2023 08 31; 8(4):e0003623. Rothman JA, Riis JL, Hamilton KR, Blair C, Granger DA, Whiteson KL. PMID: 37338237; PMCID: PMC10470043.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    12. The NUTRIENT Trial (NUTRitional Intervention among myEloproliferative Neoplasms): Feasibility Phase. medRxiv. 2023 May 12. Mendez Luque LF, Avelar-Barragan J, Nguyen H, Nguyen J, Soyfer EM, Liu J, Chen JH, Mehrotra N, Kosiorek HE, Dueck A, Himstead A, Heide E, Lem M, Alaoui KE, Marin EM, Scherber RM, Mesa RA, Whiteson KL, Odegaard A, Fleischman AG. PMID: 37214789; PMCID: PMC10197802.
      View in: PubMed   Mentions:
    13. What Lies Beneath? Taking the Plunge into the Murky Waters of Phage Biology. mSystems. 2023 02 23; 8(1):e0080722. Zünd M, Dunham SJB, Rothman JA, Whiteson KL. PMID: 36651762; PMCID: PMC9948730.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    14. Longitudinal Analysis of the Microbiome and Metabolome in the 5xfAD Mouse Model of Alzheimer's Disease. mBio. 2022 12 20; 13(6):e0179422. Dunham SJB, McNair KA, Adams ED, Avelar-Barragan J, Forner S, Mapstone M, Whiteson KL. PMID: 36468884; PMCID: PMC9765021.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimals
    15. Longitudinal metatranscriptomic sequencing of Southern California wastewater representing 16 million people from August 2020-21 reveals widespread transcription of antibiotic resistance genes. Water Res. 2022 Nov 24; 229:119421. Rothman JA, Saghir A, Chung SA, Boyajian N, Dinh T, Kim J, Oval J, Sharavanan V, York C, Zimmer-Faust AG, Langlois K, Steele JA, Griffith JF, Whiteson KL. PMID: 36455460.
      View in: PubMed   Mentions: 2     Fields:    
    16. Sequencing and Variant Detection of Eight Abundant Plant-Infecting Tobamoviruses across Southern California Wastewater. Microbiol Spectr. 2022 12 21; 10(6):e0305022. Rothman JA, Whiteson KL. PMID: 36374107; PMCID: PMC9769696.
      View in: PubMed   Mentions: 5     Fields:    Translation:CellsPHPublic Health
    17. Distinct colon mucosa microbiomes associated with tubular adenomas and serrated polyps. NPJ Biofilms Microbiomes. 2022 08 29; 8(1):69. Avelar-Barragan J, DeDecker L, Lu ZN, Coppedge B, Karnes WE, Whiteson KL. PMID: 36038569; PMCID: PMC9424272.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    18. Supplemental Oxygen Alters the Airway Microbiome in Cystic Fibrosis. mSystems. 2022 Oct 26; 7(5):e0036422. Vieira J, Jesudasen S, Bringhurst L, Sui HY, McIver L, Whiteson K, Hanselmann K, O'Toole GA, Richards CJ, Sicilian L, Neuringer I, Lai PS. PMID: 36000724; PMCID: PMC9601246.
      View in: PubMed   Mentions: 2     Fields:    
    19. Longitudinal metatranscriptomic sequencing of Southern California wastewater representing 16 million people from August 2020-21 reveals widespread transcription of antibiotic resistance genes. bioRxiv. 2022 Aug 02. Rothman JA, Saghir A, Chung SA, Boyajian N, Dinh T, Kim J, Oval J, Sharavanan V, York C, Zimmer-Faust AG, Langlois K, Steele JA, Griffith JF, Whiteson KL. PMID: 35982656; PMCID: PMC9387120.
      View in: PubMed   Mentions: 1  
    20. Phage Cocktails Constrain the Growth of Enterococcus. mSystems. 2022 Aug 30; 7(4):e0001922. Wandro S, Ghatbale P, Attai H, Hendrickson C, Samillano C, Suh J, Dunham SJB, Pride DT, Whiteson K. PMID: 35762793; PMCID: PMC9426582.
      View in: PubMed   Mentions: 7     Fields:    
    21. Capturing Actively Produced Microbial Volatile Organic Compounds from Human-Associated Samples with Vacuum-Assisted Sorbent Extraction. J Vis Exp. 2022 06 01; (184). Phan J, Kapcia J, Rodriguez CI, Vogel VL, Cardin DB, Dunham SJB, Whiteson K. PMID: 35723496.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    22. The cure from within? a review of the microbiome and diet in melanoma. Cancer Metastasis Rev. 2022 06; 41(2):261-280. Kumar P, Brazel D, DeRogatis J, Valerin JBG, Whiteson K, Chow WA, Tinoco R, Moyers JT. PMID: 35474500; PMCID: PMC9042647.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    23. Fecal Microbial Community Composition in Myeloproliferative Neoplasm Patients Is Associated with an Inflammatory State. Microbiol Spectr. 2022 06 29; 10(3):e0003222. Oliver A, El Alaoui K, Haunschild C, Avelar-Barragan J, Mendez Luque LF, Whiteson K, Fleischman AG. PMID: 35475626; PMCID: PMC9241690.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    24. Integrating Virus Monitoring Strategies for Safe Non-potable Water Reuse. Water (Basel). 2022 Apr 02; 14(8). Jiang SC, Bischel HN, Goel R, Rosso D, Sherchan S, Whiteson KL, Yan T, Solo-Gabriele HM. PMID: 37622131; PMCID: PMC10448804.
      View in: PubMed   Mentions: 2  
    25. Conceptual Exchanges for Understanding Free-Living and Host-Associated Microbiomes. mSystems. 2022 02 22; 7(1):e0137421. Pfister CA, Light SH, Bohannan B, Schmidt T, Martiny A, Hynson NA, Devkota S, David L, Whiteson K. PMID: 35014872; PMCID: PMC8751383.
      View in: PubMed   Mentions: 1     Fields:    
    26. Fecal Putative Uropathogen Abundance and Antibiotic Resistance Gene Carriage in Women With Refractory Recurrent Urinary Tract Infection Treated With Fecal Microbiota Transplantation. Female Pelvic Med Reconstr Surg. 2022 04 01; 28(4):213-219. Jeney SES, Avelar-Barragan J, Whiteson K, Chang J, Dutta S, Lane F. PMID: 34608030.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    27. RNA Viromics of Southern California Wastewater and Detection of SARS-CoV-2 Single-Nucleotide Variants. Appl Environ Microbiol. 2021 11 10; 87(23):e0144821. Rothman JA, Loveless TB, Kapcia J, Adams ED, Steele JA, Zimmer-Faust AG, Langlois K, Wanless D, Griffith M, Mao L, Chokry J, Griffith JF, Whiteson KL. PMID: 34550753; PMCID: PMC8579973.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCellsPHPublic Health
    28. Model Systems to Study the Chronic, Polymicrobial Infections in Cystic Fibrosis: Current Approaches and Exploring Future Directions. mBio. 2021 10 26; 12(5):e0176321. O'Toole GA, Crabbé A, Kümmerli R, LiPuma JJ, Bomberger JM, Davies JC, Limoli D, Phelan VV, Bliska JB, DePas WH, Dietrich LE, Hampton TH, Hunter R, Khursigara CM, Price-Whelan A, Ashare A, Cramer RA, Goldberg JB, Harrison F, Hogan DA, Henson MA, Madden DR, Mayers JR, Nadell C, Newman D, Prince A, Rivett DW, Schwartzman JD, Schultz D, Sheppard DC, Smyth AR, Spero MA, Stanton BA, Turner PE, van der Gast C, Whelan FJ, Whitaker R, Whiteson K. PMID: 34544277; PMCID: PMC8546538.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansAnimals
    29. Solutions in microbiome engineering: prioritizing barriers to organism establishment. ISME J. 2022 02; 16(2):331-338. Albright MBN, Louca S, Winkler DE, Feeser KL, Haig SJ, Whiteson KL, Emerson JB, Dunbar J. PMID: 34420034; PMCID: PMC8776856.
      View in: PubMed   Mentions: 23     Fields:    
    30. Design and Development of a Model to Study the Effect of Supplemental Oxygen on the Cystic Fibrosis Airway Microbiome. J Vis Exp. 2021 08 03; (174). Vieira J, Gallagher T, Sui HY, Jesudasen S, Whiteson K, O'Toole GA, Hanselmann K, Lai PS. PMID: 34424248.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    31. Lumacaftor/ivacaftor changes the lung microbiome and metabolome in cystic fibrosis patients. ERJ Open Res. 2021 Apr; 7(2). Neerincx AH, Whiteson K, Phan JL, Brinkman P, Abdel-Aziz MI, Weersink EJM, Altenburg J, Majoor CJ, Maitland-van der Zee AH, Bos LDJ. PMID: 33898610; PMCID: PMC8053817.
      View in: PubMed   Mentions: 15  
    32. High-Fiber, Whole-Food Dietary Intervention Alters the Human Gut Microbiome but Not Fecal Short-Chain Fatty Acids. mSystems. 2021 Mar 16; 6(2). Oliver A, Chase AB, Weihe C, Orchanian SB, Riedel SF, Hendrickson CL, Lay M, Sewall JM, Martiny JBH, Whiteson K. PMID: 33727392; PMCID: PMC8546969.
      View in: PubMed   Mentions: 33     Fields:    
    33. Liquid Chromatography Mass Spectrometry Detection of Antibiotic Agents in Sputum from Persons with Cystic Fibrosis. Antimicrob Agents Chemother. 2021 01 20; 65(2). Gallagher T, Riedel S, Kapcia J, Caverly LJ, Carmody L, Kalikin LM, Lu J, Phan J, Gargus M, Kagawa M, Leemans SW, Rothman JA, Grun F, LiPuma JJ, Whiteson KL. PMID: 33139284; PMCID: PMC7848978.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    34. Microbiome distinctions between the CRC carcinogenic pathways. Gut Microbes. 2021 Jan-Dec; 13(1):1854641. DeDecker L, Coppedge B, Avelar-Barragan J, Karnes W, Whiteson K. PMID: 33446008; PMCID: PMC8288036.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansAnimalsCells
    35. Comparing Stable Isotope Enrichment by Gas Chromatography with Time-of-Flight, Quadrupole Time-of-Flight, and Quadrupole Mass Spectrometry. Anal Chem. 2021 02 02; 93(4):2174-2182. Zhang Y, Gao B, Valdiviez L, Zhu C, Gallagher T, Whiteson K, Fiehn O. PMID: 33434014; PMCID: PMC10782559.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    36. Metagenomics of Wastewater Influent from Southern California Wastewater Treatment Facilities in the Era of COVID-19. Microbiol Resour Announc. 2020 Oct 08; 9(41). Rothman JA, Loveless TB, Griffith ML, Steele JA, Griffith JF, Whiteson KL. PMID: 33033132; PMCID: PMC7545286.
      View in: PubMed   Mentions: 6  
    37. Thriving Under Stress: Pseudomonas aeruginosa Outcompetes the Background Polymicrobial Community Under Treatment Conditions in a Novel Chronic Wound Model. Front Cell Infect Microbiol. 2020; 10:569685. Phan J, Ranjbar S, Kagawa M, Gargus M, Hochbaum AI, Whiteson KL. PMID: 33123495; PMCID: PMC7573134.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    38. Fecal Microbiota Transplantation for the Treatment of Refractory Recurrent Urinary Tract Infection. Obstet Gynecol. 2020 10; 136(4):771-773. Jeney SES, Lane F, Oliver A, Whiteson K, Dutta S. PMID: 32925627; PMCID: PMC8328471.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansPHPublic Health
    39. Cervicovaginal Microbiome Composition Is Associated with Metabolic Profiles in Healthy Pregnancy. mBio. 2020 08 25; 11(4). Oliver A, LaMere B, Weihe C, Wandro S, Lindsay KL, Wadhwa PD, Mills DA, Pride DT, Fiehn O, Northen T, de Raad M, Li H, Martiny JBH, Lynch S, Whiteson K. PMID: 32843557; PMCID: PMC7448280.
      View in: PubMed   Mentions: 19     Fields:    Translation:Humans
    40. Fiber Force: A Fiber Diet Intervention in an Advanced Course-Based Undergraduate Research Experience (CURE) Course. J Microbiol Biol Educ. 2020; 21(1). Sewall JM, Oliver A, Denaro K, Chase AB, Weihe C, Lay M, Martiny JBH, Whiteson K. PMID: 32431776; PMCID: PMC7198227.
      View in: PubMed   Mentions: 7  
    41. Longitudinal Associations of the Cystic Fibrosis Airway Microbiome and Volatile Metabolites: A Case Study. Front Cell Infect Microbiol. 2020; 10:174. Hahn A, Whiteson K, Davis TJ, Phan J, Sami I, Koumbourlis AC, Freishtat RJ, Crandall KA, Bean HD. PMID: 32411616; PMCID: PMC7198769.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    42. The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View. Trends Cancer. 2020 03; 6(3):192-204. Xavier JB, Young VB, Skufca J, Ginty F, Testerman T, Pearson AT, Macklin P, Mitchell A, Shmulevich I, Xie L, Caporaso JG, Crandall KA, Simone NL, Godoy-Vitorino F, Griffin TJ, Whiteson KL, Gustafson HH, Slade DJ, Schmidt TM, Walther-Antonio MRS, Korem T, Webb-Robertson BM, Styczynski MP, Johnson WE, Jobin C, Ridlon JM, Koh AY, Yu M, Kelly L, Wargo JA. PMID: 32101723; PMCID: PMC7098063.
      View in: PubMed   Mentions: 93     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    43. The emergence of microbiome centres. Nat Microbiol. 2020 01; 5(1):2-3. Martiny JBH, Whiteson KL, Bohannan BJM, David LA, Hynson NA, McFall-Ngai M, Rawls JF, Schmidt TM, Abdo Z, Blaser MJ, Bordenstein S, Bréchot C, Bull CT, Dorrestein P, Eisen JA, Garcia-Pichel F, Gilbert J, Hofmockel KS, Holtz ML, Knight R, Mark Welch DB, McDonald D, Methé B, Mouncey NJ, Mueller NT, Pfister CA, Proctor L, Sachs JL. PMID: 31857734.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimals
    44. PQS Produced by the Pseudomonas aeruginosa Stress Response Repels Swarms Away from Bacteriophage and Antibiotics. J Bacteriol. 2019 12 01; 201(23). Bru JL, Rawson B, Trinh C, Whiteson K, Høyland-Kroghsbo NM, Siryaporn A. PMID: 31451543; PMCID: PMC6832071.
      View in: PubMed   Mentions: 25     Fields:    Translation:Cells
    45. Maturation of the infant rhesus macaque gut microbiome and its role in the development of diarrheal disease. Genome Biol. 2019 08 26; 20(1):173. Rhoades N, Barr T, Hendrickson S, Prongay K, Haertel A, Gill L, Garzel L, Whiteson K, Slifka M, Messaoudi I. PMID: 31451108; PMCID: PMC6709555.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansAnimalsCells
    46. Global phylogeography and ancient evolution of the widespread human gut virus crAssphage. Nat Microbiol. 2019 10; 4(10):1727-1736. Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, Cinek O, Aziz RK, McNair K, Barr JJ, Bibby K, Brouns SJJ, Cazares A, de Jonge PA, Desnues C, Díaz Muñoz SL, Fineran PC, Kurilshikov A, Lavigne R, Mazankova K, McCarthy DT, Nobrega FL, Reyes Muñoz A, Tapia G, Trefault N, Tyakht AV, Vinuesa P, Wagemans J, Zhernakova A, Aarestrup FM, Ahmadov G, Alassaf A, Anton J, Asangba A, Billings EK, Cantu VA, Carlton JM, Cazares D, Cho GS, Condeff T, Cortés P, Cranfield M, Cuevas DA, De la Iglesia R, Decewicz P, Doane MP, Dominy NJ, Dziewit L, Elwasila BM, Eren AM, Franz C, Fu J, Garcia-Aljaro C, Ghedin E, Gulino KM, Haggerty JM, Head SR, Hendriksen RS, Hill C, Hyöty H, Ilina EN, Irwin MT, Jeffries TC, Jofre J, Junge RE, Kelley ST, Khan Mirzaei M, Kowalewski M, Kumaresan D, Leigh SR, Lipson D, Lisitsyna ES, Llagostera M, Maritz JM, Marr LC, McCann A, Molshanski-Mor S, Monteiro S, Moreira-Grez B, Morris M, Mugisha L, Muniesa M, Neve H, Nguyen NP, Nigro OD, Nilsson AS, O'Connell T, Odeh R, Oliver A, Piuri M, Prussin Ii AJ, Qimron U, Quan ZX, Rainetova P, Ramírez-Rojas A, Raya R, Reasor K, Rice GAO, Rossi A, Santos R, Shimashita J, Stachler EN, Stene LC, Strain R, Stumpf R, Torres PJ, Twaddle A, Ugochi Ibekwe M, Villagra N, Wandro S, White B, Whiteley A, Whiteson KL, Wijmenga C, Zambrano MM, Zschach H, Dutilh BE. PMID: 31285584; PMCID: PMC7440971.
      View in: PubMed   Mentions: 104     Fields:    Translation:HumansAnimalsCells
    47. Cystic Fibrosis-Associated Stenotrophomonas maltophilia Strain-Specific Adaptations and Responses to pH. J Bacteriol. 2019 04 01; 201(7). Gallagher T, Phan J, Oliver A, Chase AB, England WE, Wandro S, Hendrickson C, Riedel SF, Whiteson K. PMID: 30642989; PMCID: PMC6416904.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    48. Predictable Molecular Adaptation of Coevolving Enterococcus faecium and Lytic Phage EfV12-phi1. Front Microbiol. 2018; 9:3192. Wandro S, Oliver A, Gallagher T, Weihe C, England W, Martiny JBH, Whiteson K. PMID: 30766528; PMCID: PMC6365445.
      View in: PubMed   Mentions: 15  
    49. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nat Biotechnol. 2019 01; 37(1):29-37. Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA. PMID: 30556814; PMCID: PMC6871006.
      View in: PubMed   Mentions: 217     Fields:    Translation:Cells
    50. Getting Our Fingers on the Pulse of Slow-Growing Bacteria in Hard-To-Reach Places. J Bacteriol. 2018 12 15; 200(24). Gallagher T, Phan J, Whiteson K. PMID: 30249702; PMCID: PMC6256019.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    51. The Phosphate Binder Ferric Citrate Alters the Gut Microbiome in Rats with Chronic Kidney Disease. J Pharmacol Exp Ther. 2018 12; 367(3):452-460. Lau WL, Vaziri ND, Nunes ACF, Comeau AM, Langille MGI, England W, Khazaeli M, Suematsu Y, Phan J, Whiteson K. PMID: 30287477.
      View in: PubMed   Mentions: 17     Fields:    Translation:Animals
    52. Gut microbial and metabolomic profiles after fecal microbiota transplantation in pediatric ulcerative colitis patients. FEMS Microbiol Ecol. 2018 09 01; 94(9). Nusbaum DJ, Sun F, Ren J, Zhu Z, Ramsy N, Pervolarakis N, Kunde S, England W, Gao B, Fiehn O, Michail S, Whiteson K. PMID: 30010747; PMCID: PMC6454419.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCells
    53. The Microbiome and Metabolome of Preterm Infant Stool Are Personalized and Not Driven by Health Outcomes, Including Necrotizing Enterocolitis and Late-Onset Sepsis. mSphere. 2018 06 27; 3(3). Wandro S, Osborne S, Enriquez C, Bixby C, Arrieta A, Whiteson K. PMID: 29875143; PMCID: PMC5990886.
      View in: PubMed   Mentions: 71     Fields:    Translation:Humans
    54. Fermentation products in the cystic fibrosis airways induce aggregation and dormancy-associated expression profiles in a CF clinical isolate of Pseudomonas aeruginosa. FEMS Microbiol Lett. 2018 05 01; 365(10). Phan J, Gallagher T, Oliver A, England WE, Whiteson K. PMID: 29617986; PMCID: PMC5928460.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCells
    55. Tracking Polymicrobial Metabolism in Cystic Fibrosis Airways: Pseudomonas aeruginosa Metabolism and Physiology Are Influenced by Rothia mucilaginosa-Derived Metabolites. mSphere. 2018 04 25; 3(2). Gao B, Gallagher T, Zhang Y, Elbadawi-Sidhu M, Lai Z, Fiehn O, Whiteson KL. PMID: 29695623; PMCID: PMC5917424.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansCells
    56. Vive la Persistence: Engineering Human Microbiomes in the 21st Century. mSystems. 2018 Mar-Apr; 3(2). Whiteson KL. PMID: 29657964; PMCID: PMC5895876.
      View in: PubMed   Mentions:    Fields:    
    57. Longitudinal Monitoring of Biofilm Formation via Robust Surface-Enhanced Raman Scattering Quantification of Pseudomonas aeruginosa-Produced Metabolites. ACS Appl Mater Interfaces. 2018 Apr 18; 10(15):12364-12373. Nguyen CQ, Thrift WJ, Bhattacharjee A, Ranjbar S, Gallagher T, Darvishzadeh-Varcheie M, Sanderson RN, Capolino F, Whiteson K, Baldi P, Hochbaum AI, Ragan R. PMID: 29589446.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    58. Making It Last: Storage Time and Temperature Have Differential Impacts on Metabolite Profiles of Airway Samples from Cystic Fibrosis Patients. mSystems. 2017 Nov-Dec; 2(6). Wandro S, Carmody L, Gallagher T, LiPuma JJ, Whiteson K. PMID: 29202048; PMCID: PMC5705791.
      View in: PubMed   Mentions: 8     Fields:    
    59. Editorial: Virus Discovery by Metagenomics: The (Im)possibilities. Front Microbiol. 2017; 8:1710. Dutilh BE, Reyes A, Hall RJ, Whiteson KL. PMID: 28943867; PMCID: PMC5596103.
      View in: PubMed   Mentions: 17  
    60. Differential responses of human dendritic cells to metabolites from the oral/airway microbiome. Clin Exp Immunol. 2017 06; 188(3):371-379. Whiteson K, Agrawal S, Agrawal A. PMID: 28194750; PMCID: PMC5422860.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    61. Stable isotope profiles reveal active production of VOCs from human-associated microbes. J Breath Res. 2017 Feb 06; 11(1):017101. Phan J, Meinardi S, Barletta B, Blake DR, Whiteson K. PMID: 28070022.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    62. Bacteria in the airways of patients with cystic fibrosis are genetically capable of producing VOCs in breath. J Breath Res. 2016 12 17; 10(4):047103. Bos LD, Meinardi S, Blake D, Whiteson K. PMID: 27991430.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    63. Ecological networking of cystic fibrosis lung infections. NPJ Biofilms Microbiomes. 2016; 2:4. Quinn RA, Whiteson K, Lim YW, Zhao J, Conrad D, LiPuma JJ, Rohwer F, Widder S. PMID: 28649398; PMCID: PMC5460249.
      View in: PubMed   Mentions: 45     Fields:    
    64. Metabolomics of pulmonary exacerbations reveals the personalized nature of cystic fibrosis disease. PeerJ. 2016; 4:e2174. Quinn RA, Lim YW, Mak TD, Whiteson K, Furlan M, Conrad D, Rohwer F, Dorrestein P. PMID: 27602256; PMCID: PMC4991883.
      View in: PubMed   Mentions: 24     Fields:    
    65. Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome. ISME J. 2016 06; 10(6):1483-98. Quinn RA, Phelan VV, Whiteson KL, Garg N, Bailey BA, Lim YW, Conrad DJ, Dorrestein PC, Rohwer FL. PMID: 26623545; PMCID: PMC5029181.
      View in: PubMed   Mentions: 51     Fields:    Translation:HumansCells
    66. A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation. ISME J. 2015 Mar 17; 9(4):1024-38. Quinn RA, Whiteson K, Lim YW, Salamon P, Bailey B, Mienardi S, Sanchez SE, Blake D, Conrad D, Rohwer F. PMID: 25514533; PMCID: PMC4817692.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansCells
    67. A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation. ISME J. 2015 Mar 17; 9(4):1052. Quinn RA, Whiteson K, Lim YW, Salamon P, Bailey B, Mienardi S, Sanchez SE, Blake D, Conrad D, Rohwer F. PMID: 25777574; PMCID: PMC4817711.
      View in: PubMed   Mentions: 10     Fields:    
    68. Noma affected children from Niger have distinct oral microbial communities based on high-throughput sequencing of 16S rRNA gene fragments. PLoS Negl Trop Dis. 2014 Dec; 8(12):e3240. Whiteson KL, Lazarevic V, Tangomo-Bento M, Girard M, Maughan H, Pittet D, Francois P, Schrenzel J, GESNOMA study group. PMID: 25474262; PMCID: PMC4256271.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    69. The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography. Am J Respir Crit Care Med. 2014 Jun 01; 189(11):1309-15. Whiteson KL, Bailey B, Bergkessel M, Conrad D, Delhaes L, Felts B, Harris JK, Hunter R, Lim YW, Maughan H, Quinn R, Salamon P, Sullivan J, Wagner BD, Rainey PB. PMID: 24702670; PMCID: PMC4098084.
      View in: PubMed   Mentions: 56     Fields:    Translation:Humans
    70. Biogeochemical forces shape the composition and physiology of polymicrobial communities in the cystic fibrosis lung. mBio. 2014 Mar 18; 5(2):e00956-13. Quinn RA, Lim YW, Maughan H, Conrad D, Rohwer F, Whiteson KL. PMID: 24643867; PMCID: PMC3967525.
      View in: PubMed   Mentions: 63     Fields:    Translation:HumansCells
    71. A genomic perspective on a new bacterial genus and species from the Alcaligenaceae family, Basilea psittacipulmonis. BMC Genomics. 2014 Mar 01; 15:169. Whiteson KL, Hernandez D, Lazarevic V, Gaia N, Farinelli L, François P, Pilo P, Frey J, Schrenzel J. PMID: 24581117; PMCID: PMC4028982.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    72. Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation. ISME J. 2014 Jun; 8(6):1247-58. Whiteson KL, Meinardi S, Lim YW, Schmieder R, Maughan H, Quinn R, Blake DR, Conrad D, Rohwer F. PMID: 24401860; PMCID: PMC4030226.
      View in: PubMed   Mentions: 62     Fields:    Translation:HumansCells
    73. Mechanistic model of Rothia mucilaginosa adaptation toward persistence in the CF lung, based on a genome reconstructed from metagenomic data. PLoS One. 2013; 8(5):e64285. Lim YW, Schmieder R, Haynes M, Furlan M, Matthews TD, Whiteson K, Poole SJ, Hayes CS, Low DA, Maughan H, Edwards R, Conrad D, Rohwer F. PMID: 23737977; PMCID: PMC3667864.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCells
    74. Bacteriophage adhering to mucus provide a non-host-derived immunity. Proc Natl Acad Sci U S A. 2013 Jun 25; 110(26):10771-6. Barr JJ, Auro R, Furlan M, Whiteson KL, Erb ML, Pogliano J, Stotland A, Wolkowicz R, Cutting AS, Doran KS, Salamon P, Youle M, Rohwer F. PMID: 23690590; PMCID: PMC3696810.
      View in: PubMed   Mentions: 378     Fields:    Translation:HumansAnimalsCells
    75. Effects of amoxicillin treatment on the salivary microbiota in children with acute otitis media. Clin Microbiol Infect. 2013 Aug; 19(8):E335-42. Lazarevic V, Manzano S, Gaïa N, Girard M, Whiteson K, Hibbs J, François P, Gervaix A, Schrenzel J. PMID: 23565884.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    76. Going viral: next-generation sequencing applied to phage populations in the human gut. Nat Rev Microbiol. 2012 Sep; 10(9):607-17. Reyes A, Semenkovich NP, Whiteson K, Rohwer F, Gordon JI. PMID: 22864264; PMCID: PMC3596094.
      View in: PubMed   Mentions: 209     Fields:    Translation:HumansCells
    77. Bacterial diversity in oral samples of children in niger with acute noma, acute necrotizing gingivitis, and healthy controls. PLoS Negl Trop Dis. 2012; 6(3):e1556. Bolivar I, Whiteson K, Stadelmann B, Baratti-Mayer D, Gizard Y, Mombelli A, Pittet D, Schrenzel J, Geneva Study Group on Noma (GESNOMA). PMID: 22413030; PMCID: PMC3295795.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansCells
    78. Analysis of the salivary microbiome using culture-independent techniques. J Clin Bioinforma. 2012 Feb 02; 2:4. Lazarevic V, Whiteson K, Gaïa N, Gizard Y, Hernandez D, Farinelli L, Osterås M, François P, Schrenzel J. PMID: 22300522; PMCID: PMC3296672.
      View in: PubMed   Mentions: 27  
    79. The CodY pleiotropic repressor controls virulence in gram-positive pathogens. FEMS Immunol Med Microbiol. 2011 Jul; 62(2):123-39. Stenz L, Francois P, Whiteson K, Wolz C, Linder P, Schrenzel J. PMID: 21539625.
      View in: PubMed   Mentions: 70     Fields:    Translation:HumansAnimalsCells
    80. Study of inter- and intra-individual variations in the salivary microbiota. BMC Genomics. 2010 Sep 28; 11:523. Lazarevic V, Whiteson K, Hernandez D, François P, Schrenzel J. PMID: 20920195; PMCID: PMC2997015.
      View in: PubMed   Mentions: 112     Fields:    Translation:HumansCells
    81. Metagenomic study of the oral microbiota by Illumina high-throughput sequencing. J Microbiol Methods. 2009 Dec; 79(3):266-71. Lazarevic V, Whiteson K, Huse S, Hernandez D, Farinelli L, Osterås M, Schrenzel J, François P. PMID: 19796657; PMCID: PMC3568755.
      View in: PubMed   Mentions: 149     Fields:    Translation:HumansCells
    82. Binding and catalytic contributions to site recognition by flp recombinase. J Biol Chem. 2008 Apr 25; 283(17):11414-23. Whiteson KL, Rice PA. PMID: 18276592; PMCID: PMC2431069.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    83. Identification of a potential general acid/base in the reversible phosphoryl transfer reactions catalyzed by tyrosine recombinases: Flp H305. Chem Biol. 2007 Feb; 14(2):121-9. Whiteson KL, Chen Y, Chopra N, Raymond AC, Rice PA. PMID: 17317566; PMCID: PMC1857323.
      View in: PubMed   Mentions: 15     Fields:    Translation:Cells
    84. Mechanisms of site-specific recombination. Annu Rev Biochem. 2006; 75:567-605. Grindley ND, Whiteson KL, Rice PA. PMID: 16756503.
      View in: PubMed   Mentions: 319     Fields:    Translation:AnimalsCells
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