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Martiny, Adam C

TitleProfessor
InstitutionUniversity of California, Irvine
DepartmentEarth System Science
Address3208 Croul Hall
Zot 3100
CA 92697
Phone(949) 824-9713, 1458
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Kent AG, Garcia CA, Martiny A. Increased biofilm formation due to high-temperature adaptation in marine Roseobacter. Nat Microbiol. 2018 Jul 30. PMID: 30061756.
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    2. Garcia NS, Sexton J, Riggins T, Brown J, Lomas MW, Martiny A. High Variability in Cellular Stoichiometry of Carbon, Nitrogen, and Phosphorus Within Classes of Marine Eukaryotic Phytoplankton Under Sufficient Nutrient Conditions. Front Microbiol. 2018; 9:543. PMID: 29636735.
      View in: PubMed
    3. Chase AB, Karaoz U, Brodie EL, Gomez-Lunar Z, Martiny A, Martiny JBH. Microdiversity of an Abundant Terrestrial Bacterium Encompasses Extensive Variation in Ecologically Relevant Traits. MBio. 2017 Nov 14; 8(6). PMID: 29138307.
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    4. Moreno AR, Martiny A. Ecological Stoichiometry of Ocean Plankton. Ann Rev Mar Sci. 2018 Jan 03; 10:43-69. PMID: 28853998.
      View in: PubMed
    5. Larkin AA, Martiny A. Microdiversity shapes the traits, niche space, and biogeography of microbial taxa. Environ Microbiol Rep. 2017 04; 9(2):55-70. PMID: 28185400.
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    6. Baer SE, Lomas MW, Terpis KX, Mouginot C, Martiny A. Stoichiometry of Prochlorococcus, Synechococcus, and small eukaryotic populations in the western North Atlantic Ocean. Environ Microbiol. 2017 Apr; 19(4):1568-1583. PMID: 28139885.
      View in: PubMed
    7. Berlemont R, Martiny A. Glycoside Hydrolases across Environmental Microbial Communities. PLoS Comput Biol. 2016 Dec; 12(12):e1005300. PMID: 27992426.
      View in: PubMed
    8. Martiny A, Ma L, Mouginot C, Chandler JW, Zinser ER. Interactions between Thermal Acclimation, Growth Rate, and Phylogeny Influence Prochlorococcus Elemental Stoichiometry. PLoS One. 2016; 11(12):e0168291. PMID: 27936127.
      View in: PubMed
    9. Martiny JB, Martiny A, Weihe C, Lu Y, Berlemont R, Brodie EL, Goulden ML, Treseder KK, Allison SD. Microbial legacies alter decomposition in response to simulated global change. ISME J. 2017 02; 11(2):490-499. PMID: 27740610.
      View in: PubMed
    10. Nelson MB, Martiny A, Martiny JB. Global biogeography of microbial nitrogen-cycling traits in soil. Proc Natl Acad Sci U S A. 2016 07 19; 113(29):8033-40. PMID: 27432978; PMCID: PMC4961168.
    11. Garcia NS, Bonachela JA, Martiny A. Interactions between growth-dependent changes in cell size, nutrient supply and cellular elemental stoichiometry of marine Synechococcus. ISME J. 2016 11; 10(11):2715-2724. PMID: 27058506.
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    12. Kent AG, Dupont CL, Yooseph S, Martiny A. Global biogeography of Prochlorococcus genome diversity in the surface ocean. ISME J. 2016 08; 10(8):1856-65. PMID: 26836261.
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    13. Martiny JB, Jones SE, Lennon JT, Martiny A. Microbiomes in light of traits: A phylogenetic perspective. Science. 2015 Nov 06; 350(6261):aac9323. PMID: 26542581.
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    14. Hatosy SM, Martiny A. The ocean as a global reservoir of antibiotic resistance genes. Appl Environ Microbiol. 2015 Nov; 81(21):7593-9. PMID: 26296734; PMCID: PMC4592852.
    15. Nelson MB, Berlemont R, Martiny A, Martiny JB. Nitrogen Cycling Potential of a Grassland Litter Microbial Community. Appl Environ Microbiol. 2015 Oct; 81(20):7012-22. PMID: 26231641; PMCID: PMC4579426.
    16. Galbraith ED, Martiny A. A simple nutrient-dependence mechanism for predicting the stoichiometry of marine ecosystems. Proc Natl Acad Sci U S A. 2015 Jul 07; 112(27):8199-204. PMID: 26056296; PMCID: PMC4500256.
    17. Amend AS, Martiny A, Allison SD, Berlemont R, Goulden ML, Lu Y, Treseder KK, Weihe C, Martiny JB. Microbial response to simulated global change is phylogenetically conserved and linked with functional potential. ISME J. 2016 Jan; 10(1):109-18. PMID: 26046258; PMCID: PMC4681869 [Available on 01/01/17].
    18. Matulich KL, Weihe C, Allison SD, Amend AS, Berlemont R, Goulden ML, Kimball S, Martiny A, Martiny JB. Temporal variation overshadows the response of leaf litter microbial communities to simulated global change. ISME J. 2015 Nov; 9(11):2477-89. PMID: 25978544; PMCID: PMC4611511 [Available on 11/01/16].
    19. Kretz CB, Bell DW, Lomas DA, Lomas MW, Martiny A. Influence of growth rate on the physiological response of marine Synechococcus to phosphate limitation. Front Microbiol. 2015; 6:85. PMID: 25717321; PMCID: PMC4324148.
    20. Berlemont R, Martiny A. Genomic potential for polysaccharide deconstruction in bacteria. Appl Environ Microbiol. 2015 Feb; 81(4):1513-19. PMID: 25527556; PMCID: PMC4309713.
    21. Martiny A, Vrugt JA, Lomas MW. Concentrations and ratios of particulate organic carbon, nitrogen, and phosphorus in the global ocean. Sci Data. 2014; 1:140048. PMID: 25977799; PMCID: PMC4421931.
    22. Berlemont R, Allison SD, Weihe C, Lu Y, Brodie EL, Martiny JB, Martiny A. Cellulolytic potential under environmental changes in microbial communities from grassland litter. Front Microbiol. 2014; 5:639. PMID: 25505459; PMCID: PMC4243572.
    23. Lomas MW, Bonachela JA, Levin SA, Martiny A. Impact of ocean phytoplankton diversity on phosphate uptake. Proc Natl Acad Sci U S A. 2014 Dec 09; 111(49):17540-5. PMID: 25422472; PMCID: PMC4267344.
    24. Berube PM, Biller SJ, Kent AG, Berta-Thompson JW, Roggensack SE, Roache-Johnson KH, Ackerman M, Moore LR, Meisel JD, Sher D, Thompson LR, Campbell L, Martiny A, Chisholm SW. Physiology and evolution of nitrate acquisition in Prochlorococcus. ISME J. 2015 May; 9(5):1195-207. PMID: 25350156; PMCID: PMC4409163.
    25. Johnson ZI, Martiny A. Techniques for quantifying phytoplankton biodiversity. Ann Rev Mar Sci. 2015; 7:299-324. PMID: 25251272.
      View in: PubMed
    26. Allison SD, Lu L, Kent AG, Martiny A. Extracellular enzyme production and cheating in Pseudomonas fluorescens depend on diffusion rates. Front Microbiol. 2014; 5:169. PMID: 24782855; PMCID: PMC3990056.
    27. Unsworth DA, Russell JA, Martiny A. Presence of Staphylococcus aureus on university dance studio floors and barres: a preliminary investigation. J Dance Med Sci. 2014; 18(3):115-20. PMID: 25474176.
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    28. Zimmerman AE, Allison SD, Martiny A. Phylogenetic constraints on elemental stoichiometry and resource allocation in heterotrophic marine bacteria. Environ Microbiol. 2014 May; 16(5):1398-410. PMID: 24237481.
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    29. Batmalle CS, Chiang HI, Zhang K, Lomas MW, Martiny A. Development and bias assessment of a method for targeted metagenomic sequencing of marine cyanobacteria. Appl Environ Microbiol. 2014 Feb; 80(3):1116-25. PMID: 24296495; PMCID: PMC3911227.
    30. Nyyssönen M, Tran HM, Karaoz U, Weihe C, Hadi MZ, Martiny JB, Martiny A, Brodie EL. Coupled high-throughput functional screening and next generation sequencing for identification of plant polymer decomposing enzymes in metagenomic libraries. Front Microbiol. 2013; 4:282. PMID: 24069019; PMCID: PMC3779933.
    31. Hatosy SM, Martiny JB, Sachdeva R, Steele J, Fuhrman JA, Martiny A. Beta diversity of marine bacteria depends on temporal scale. Ecology. 2013 Sep; 94(9):1898-904. PMID: 24279260.
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    32. Flombaum P, Gallegos JL, Gordillo RA, Rincón J, Zabala LL, Jiao N, Karl DM, Li WK, Lomas MW, Veneziano D, Vera CS, Vrugt JA, Martiny A. Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus. Proc Natl Acad Sci U S A. 2013 Jun 11; 110(24):9824-9. PMID: 23703908; PMCID: PMC3683724.
    33. Allison SD, Lu Y, Weihe C, Goulden ML, Martiny A, Treseder KK, Martiny JB. Microbial abundance and composition influence litter decomposition response to environmental change. Ecology. 2013 Mar; 94(3):714-25. PMID: 23687897.
      View in: PubMed
    34. Zimmerman AE, Martiny A, Allison SD. Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes. ISME J. 2013 Jun; 7(6):1187-99. PMID: 23303371; PMCID: PMC3660669.
    35. Berlemont R, Martiny A. Phylogenetic distribution of potential cellulases in bacteria. Appl Environ Microbiol. 2013 Mar; 79(5):1545-54. PMID: 23263967; PMCID: PMC3591946.
    36. Martiny A, Treseder K, Pusch G. Phylogenetic conservatism of functional traits in microorganisms. ISME J. 2013 Apr; 7(4):830-8. PMID: 23235290; PMCID: PMC3603392.
    37. Allison SD, Chao Y, Farrara JD, Hatosy S, Martiny A. Fine-scale temporal variation in marine extracellular enzymes of coastal southern california. Front Microbiol. 2012; 3:301. PMID: 22912628; PMCID: PMC3421452.
    38. Freitas S, Hatosy S, Fuhrman JA, Huse SM, Welch DB, Sogin ML, Martiny A. Global distribution and diversity of marine Verrucomicrobia. ISME J. 2012 Aug; 6(8):1499-505. PMID: 22318305; PMCID: PMC3400412.
    39. Martiny A, Martiny JB, Weihe C, Field A, Ellis JC. Functional metagenomics reveals previously unrecognized diversity of antibiotic resistance genes in gulls. Front Microbiol. 2011; 2:238. PMID: 22347872; PMCID: PMC3275322.
    40. Kathuria S, Martiny A. Prevalence of a calcium-based alkaline phosphatase associated with the marine cyanobacterium Prochlorococcus and other ocean bacteria. Environ Microbiol. 2011 Jan; 13(1):74-83. PMID: 20649645.
      View in: PubMed
    41. Rusch DB, Martiny A, Dupont CL, Halpern AL, Venter JC. Characterization of Prochlorococcus clades from iron-depleted oceanic regions. Proc Natl Acad Sci U S A. 2010 Sep 14; 107(37):16184-9. PMID: 20733077; PMCID: PMC2941326.
    42. Malmstrom RR, Coe A, Kettler GC, Martiny A, Frias-Lopez J, Zinser ER, Chisholm SW. Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans. ISME J. 2010 Oct; 4(10):1252-64. PMID: 20463762.
      View in: PubMed
    43. Martiny A, Kathuria S, Berube PM. Widespread metabolic potential for nitrite and nitrate assimilation among Prochlorococcus ecotypes. Proc Natl Acad Sci U S A. 2009 Jun 30; 106(26):10787-92. PMID: 19549842; PMCID: PMC2705535.
    44. Martiny A, Huang Y, Li W. Occurrence of phosphate acquisition genes in Prochlorococcus cells from different ocean regions. Environ Microbiol. 2009 Jun; 11(6):1340-7. PMID: 19187282.
      View in: PubMed
    45. Martiny A, Tai AP, Veneziano D, Primeau F, Chisholm SW. Taxonomic resolution, ecotypes and the biogeography of Prochlorococcus. Environ Microbiol. 2009 Apr; 11(4):823-32. PMID: 19021692.
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    46. Horner-Devine MC, Martiny A. Biogeochemistry. News about nitrogen. Science. 2008 May 09; 320(5877):757-8. PMID: 18467581.
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    47. Kettler GC, Martiny A, Huang K, Zucker J, Coleman ML, Rodrigue S, Chen F, Lapidus A, Ferriera S, Johnson J, Steglich C, Church GM, Richardson P, Chisholm SW. Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. PLoS Genet. 2007 Dec; 3(12):e231. PMID: 18159947; PMCID: PMC2151091.
    48. Martiny A, Coleman ML, Chisholm SW. Phosphate acquisition genes in Prochlorococcus ecotypes: evidence for genome-wide adaptation. Proc Natl Acad Sci U S A. 2006 Aug 15; 103(33):12552-7. PMID: 16895994; PMCID: PMC1567916.
    49. Zhang K, Martiny A, Reppas NB, Barry KW, Malek J, Chisholm SW, Church GM. Sequencing genomes from single cells by polymerase cloning. Nat Biotechnol. 2006 Jun; 24(6):680-6. PMID: 16732271.
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    50. Coleman ML, Sullivan MB, Martiny A, Steglich C, Barry K, Delong EF, Chisholm SW. Genomic islands and the ecology and evolution of Prochlorococcus. Science. 2006 Mar 24; 311(5768):1768-70. PMID: 16556843.
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    51. Zinser ER, Coe A, Johnson ZI, Martiny A, Fuller NJ, Scanlan DJ, Chisholm SW. Prochlorococcus ecotype abundances in the North Atlantic Ocean as revealed by an improved quantitative PCR method. Appl Environ Microbiol. 2006 Jan; 72(1):723-32. PMID: 16391112; PMCID: PMC1352191.
    52. Martiny A, Albrechtsen HJ, Arvin E, Molin S. Identification of bacteria in biofilm and bulk water samples from a nonchlorinated model drinking water distribution system: detection of a large nitrite-oxidizing population associated with Nitrospira spp. Appl Environ Microbiol. 2005 Dec; 71(12):8611-7. PMID: 16332854; PMCID: PMC1317318.
    53. Martiny A, Jørgensen TM, Albrechtsen HJ, Arvin E, Molin S. Long-term succession of structure and diversity of a biofilm formed in a model drinking water distribution system. Appl Environ Microbiol. 2003 Nov; 69(11):6899-907. PMID: 14602654; PMCID: PMC262284.
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