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Martiny, Jennifer B

TitleProfessor
InstitutionUniversity of California, Irvine
DepartmentEcology & Evolutionary Biology
Address3029 Biological Sciences III
Zot 2525
CA 92697
Phone(949) 824-0487
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Glassman SI, Martiny J. Broadscale Ecological Patterns Are Robust to Use of Exact Sequence Variants versus Operational Taxonomic Units. mSphere. 2018 Jul 18; 3(4). PMID: 30021874.
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    2. Baker NR, Khalili B, Martiny J, Allison SD. Microbial decomposers not constrained by climate history along a Mediterranean climate gradient in southern California. Ecology. 2018 Apr 17. PMID: 29663355.
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    3. Martiny J, Walters KE. Towards a Natural History of Soil Bacterial Communities. Trends Microbiol. 2018 Apr; 26(4):250-252. PMID: 29523393.
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    4. Chase AB, Karaoz U, Brodie EL, Gomez-Lunar Z, Martiny AC, Martiny J. Microdiversity of an Abundant Terrestrial Bacterium Encompasses Extensive Variation in Ecologically Relevant Traits. MBio. 2017 Nov 14; 8(6). PMID: 29138307.
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    5. Albright MBN, Martiny J. Dispersal alters bacterial diversity and composition in a natural community. ISME J. 2018 Jan; 12(1):296-299. PMID: 29053150.
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    6. Dolan KL, Peña J, Allison SD, Martiny J. Phylogenetic conservation of substrate use specialization in leaf litter bacteria. PLoS One. 2017; 12(3):e0174472. PMID: 28358894.
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    7. Chase AB, Arevalo P, Polz MF, Berlemont R, Martiny J. Evidence for Ecological Flexibility in the Cosmopolitan Genus Curtobacterium. Front Microbiol. 2016; 7:1874. PMID: 27920771.
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    8. Marston MF, Martiny J. Genomic diversification of marine cyanophages into stable ecotypes. Environ Microbiol. 2016 Nov; 18(11):4240-4253. PMID: 27696643.
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    9. Martiny J, Martiny AC, Weihe C, Lu Y, Berlemont R, Brodie EL, Goulden ML, Treseder KK, Allison SD. Microbial legacies alter decomposition in response to simulated global change. ISME J. 2017 02; 11(2):490-499. PMID: 27740610.
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    10. Crummett LT, Puxty RJ, Weihe C, Marston MF, Martiny J. The genomic content and context of auxiliary metabolic genes in marine cyanomyoviruses. Virology. 2016 12; 499:219-229. PMID: 27693926.
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    11. Evans S, Martiny J, Allison SD. Effects of dispersal and selection on stochastic assembly in microbial communities. ISME J. 2017 01; 11(1):176-185. PMID: 27494293.
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    12. Nelson MB, Chase AB, Martiny J, Stocker R, Nguyen J, Lloyd K, Oshiro RT, Kearns DB, Schneider JP, Ringel PD, Basler M, Olson CA, Vuong HE, Hsiao EY, Roller BR, Ackermann M, Smillie C, Chien D, Alm E, Jermy AJ. The Microbial Olympics 2016. Nat Microbiol. 2016 07 26; 1(8):16122. PMID: 27573121.
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    13. Nelson MB, Martiny AC, Martiny J. Global biogeography of microbial nitrogen-cycling traits in soil. Proc Natl Acad Sci U S A. 2016 07 19; 113(29):8033-40. PMID: 27432978; PMCID: PMC4961168.
    14. Hanson CA, Marston MF, Martiny J. Biogeographic Variation in Host Range Phenotypes and Taxonomic Composition of Marine Cyanophage Isolates. Front Microbiol. 2016; 7:983. PMID: 27446023; PMCID: PMC4919323.
    15. Martiny J. History Leaves Its Mark on Soil Bacterial Diversity. MBio. 2016 06 07; 7(3). PMID: 27273826; PMCID: PMC4959671.
    16. Martiny J, Jones SE, Lennon JT, Martiny AC. Microbiomes in light of traits: A phylogenetic perspective. Science. 2015 Nov 06; 350(6261):aac9323. PMID: 26542581.
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    17. Nelson MB, Berlemont R, Martiny AC, Martiny J. Nitrogen Cycling Potential of a Grassland Litter Microbial Community. Appl Environ Microbiol. 2015 Oct; 81(20):7012-22. PMID: 26231641; PMCID: PMC4579426.
    18. Amend AS, Martiny AC, Allison SD, Berlemont R, Goulden ML, Lu Y, Treseder KK, Weihe C, Martiny J. Microbial response to simulated global change is phylogenetically conserved and linked with functional potential. ISME J. 2016 Jan; 10(1):109-18. PMID: 26046258; PMCID: PMC4681869 [Available on 01/01/17].
    19. Matulich KL, Weihe C, Allison SD, Amend AS, Berlemont R, Goulden ML, Kimball S, Martiny AC, Martiny J. Temporal variation overshadows the response of leaf litter microbial communities to simulated global change. ISME J. 2015 Nov; 9(11):2477-89. PMID: 25978544; PMCID: PMC4611511 [Available on 11/01/16].
    20. Vivanco L, Irvine IC, Martiny J. Nonlinear responses in salt marsh functioning to increased nitrogen addition. Ecology. 2015 Apr; 96(4):936-47. PMID: 26230015.
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    21. Amend AS, Matulich KL, Martiny J. Nitrogen addition, not initial phylogenetic diversity, increases litter decomposition by fungal communities. Front Microbiol. 2015; 6:109. PMID: 25741330; PMCID: PMC4332350.
    22. Matulich KL, Martiny J. Microbial composition alters the response of litter decomposition to environmental change. Ecology. 2015 Jan; 96(1):154-63. PMID: 26236900.
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    23. Berlemont R, Allison SD, Weihe C, Lu Y, Brodie EL, Martiny J, Martiny AC. Cellulolytic potential under environmental changes in microbial communities from grassland litter. Front Microbiol. 2014; 5:639. PMID: 25505459; PMCID: PMC4243572.
    24. Sjöstedt J, Martiny J, Munk P, Riemann L. Abundance of broad bacterial taxa in the sargasso sea explained by environmental conditions but not water mass. Appl Environ Microbiol. 2014 May; 80(9):2786-95. PMID: 24561593; PMCID: PMC3993294.
    25. Nyyssönen M, Tran HM, Karaoz U, Weihe C, Hadi MZ, Martiny J, Martiny AC, Brodie EL. Coupled high-throughput functional screening and next generation sequencing for identification of plant polymer decomposing enzymes in metagenomic libraries. Front Microbiol. 2013; 4:282. PMID: 24069019; PMCID: PMC3779933.
    26. Hatosy SM, Martiny J, Sachdeva R, Steele J, Fuhrman JA, Martiny AC. Beta diversity of marine bacteria depends on temporal scale. Ecology. 2013 Sep; 94(9):1898-904. PMID: 24279260.
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    27. Martiny J, Riemann L, Marston MF, Middelboe M. Antagonistic coevolution of marine planktonic viruses and their hosts. Ann Rev Mar Sci. 2014; 6:393-414. PMID: 23987913.
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    28. Allison SD, Lu Y, Weihe C, Goulden ML, Martiny AC, Treseder KK, Martiny J. Microbial abundance and composition influence litter decomposition response to environmental change. Ecology. 2013 Mar; 94(3):714-25. PMID: 23687897.
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    29. Marston MF, Taylor S, Sme N, Parsons RJ, Noyes TJ, Martiny J. Marine cyanophages exhibit local and regional biogeography. Environ Microbiol. 2013 May; 15(5):1452-63. PMID: 23279166.
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    30. Shade A, Peter H, Allison SD, Baho DL, Berga M, Bürgmann H, Huber DH, Langenheder S, Lennon JT, Martiny J, Matulich KL, Schmidt TM, Handelsman J. Fundamentals of microbial community resistance and resilience. Front Microbiol. 2012; 3:417. PMID: 23267351; PMCID: PMC3525951.
    31. Reed HE, Martiny J. Microbial composition affects the functioning of estuarine sediments. ISME J. 2013 Apr; 7(4):868-79. PMID: 23235294; PMCID: PMC3603390.
    32. Hanson CA, Fuhrman JA, Horner-Devine MC, Martiny J. Beyond biogeographic patterns: processes shaping the microbial landscape. Nat Rev Microbiol. 2012 May 14; 10(7):497-506. PMID: 22580365.
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    33. Irvine IC, Vivanco L, Bentley PN, Martiny J. The effect of nitrogen enrichment on c(1)-cycling microorganisms and methane flux in salt marsh sediments. Front Microbiol. 2012; 3:90. PMID: 22470369; PMCID: PMC3307020.
    34. Marston MF, Pierciey FJ, Shepard A, Gearin G, Qi J, Yandava C, Schuster SC, Henn MR, Martiny J. Rapid diversification of coevolving marine Synechococcus and a virus. Proc Natl Acad Sci U S A. 2012 Mar 20; 109(12):4544-9. PMID: 22388749; PMCID: PMC3311363.
    35. Kuznetsov YG, Chang SC, Credaroli A, Martiny J, McPherson A. An atomic force microscopy investigation of cyanophage structure. Micron. 2012 Dec; 43(12):1336-42. PMID: 22424715.
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    36. Irvine IC, Brigham CA, Suding KN, Martiny J. The abundance of pink-pigmented facultative methylotrophs in the root zone of plant species in invaded coastal sage scrub habitat. PLoS One. 2012; 7(2):e31026. PMID: 22383990; PMCID: PMC3286463.
    37. Martiny AC, Martiny J, Weihe C, Field A, Ellis JC. Functional metagenomics reveals previously unrecognized diversity of antibiotic resistance genes in gulls. Front Microbiol. 2011; 2:238. PMID: 22347872; PMCID: PMC3275322.
    38. Zinger L, Amaral-Zettler LA, Fuhrman JA, Horner-Devine MC, Huse SM, Welch DB, Martiny J, Sogin M, Boetius A, Ramette A. Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems. PLoS One. 2011; 6(9):e24570. PMID: 21931760; PMCID: PMC3169623.
    39. Martiny J, Eisen JA, Penn K, Allison SD, Horner-Devine MC. Drivers of bacterial beta-diversity depend on spatial scale. Proc Natl Acad Sci U S A. 2011 May 10; 108(19):7850-4. PMID: 21518859; PMCID: PMC3093525.
    40. Mohamed DJ, Martiny J. Patterns of fungal diversity and composition along a salinity gradient. ISME J. 2011 Mar; 5(3):379-88. PMID: 20882058; PMCID: PMC3105720.
    41. Kuznetsov YG, Martiny J, McPherson A. Structural analysis of a Synechococcus myovirus S-CAM4 and infected cells by atomic force microscopy. J Gen Virol. 2010 Dec; 91(Pt 12):3095-104. PMID: 20739271.
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    42. Lage MD, Reed HE, Weihe C, Crain CM, Martiny J. Nitrogen and phosphorus enrichment alter the composition of ammonia-oxidizing bacteria in salt marsh sediments. ISME J. 2010 Jul; 4(7):933-44. PMID: 20220792.
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    43. Allison SD, Martiny J. Colloquium paper: resistance, resilience, and redundancy in microbial communities. Proc Natl Acad Sci U S A. 2008 Aug 12; 105 Suppl 1:11512-9. PMID: 18695234; PMCID: PMC2556421.
    44. Lennon JT, Martiny J. Rapid evolution buffers ecosystem impacts of viruses in a microbial food web. Ecol Lett. 2008 Nov; 11(11):1178-1188. PMID: 18647331.
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    45. Shaw AK, Halpern AL, Beeson K, Tran B, Venter JC, Martiny J. It's all relative: ranking the diversity of aquatic bacterial communities. Environ Microbiol. 2008 Sep; 10(9):2200-10. PMID: 18637951.
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    46. Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, Cochrane G, Cole J, Dawyndt P, De Vos P, DePamphilis C, Edwards R, Faruque N, Feldman R, Gilbert J, Gilna P, Glöckner FO, Goldstein P, Guralnick R, Haft D, Hancock D, Hermjakob H, Hertz-Fowler C, Hugenholtz P, Joint I, Kagan L, Kane M, Kennedy J, Kowalchuk G, Kottmann R, Kolker E, Kravitz S, Kyrpides N, Leebens-Mack J, Lewis SE, Li K, Lister AL, Lord P, Maltsev N, Markowitz V, Martiny J, Methe B, Mizrachi I, Moxon R, Nelson K, Parkhill J, Proctor L, White O, Sansone SA, Spiers A, Stevens R, Swift P, Taylor C, Tateno Y, Tett A, Turner S, Ussery D, Vaughan B, Ward N, Whetzel T, San Gil I, Wilson G, Wipat A. The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol. 2008 May; 26(5):541-7. PMID: 18464787.
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    47. Bradley DJ, Gilbert GS, Martiny J. Pathogens promote plant diversity through a compensatory response. Ecol Lett. 2008 May; 11(5):461-9. PMID: 18312409.
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    48. Reed HE, Martiny J. Testing the functional significance of microbial composition in natural communities. FEMS Microbiol Ecol. 2007 Nov; 62(2):161-70. PMID: 17937673.
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    49. Stoddard LI, Martiny J, Marston MF. Selection and characterization of cyanophage resistance in marine Synechococcus strains. Appl Environ Microbiol. 2007 Sep; 73(17):5516-22. PMID: 17630310; PMCID: PMC2042077.
    50. Lennon JT, Khatana SA, Marston MF, Martiny J. Is there a cost of virus resistance in marine cyanobacteria? ISME J. 2007 Aug; 1(4):300-12. PMID: 18043641.
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    51. Horner-Devine MC, Silver JM, Leibold MA, Bohannan BJ, Colwell RK, Fuhrman JA, Green JL, Kuske CR, Martiny J, Muyzer G, Ovreås L, Reysenbach AL, Smith VH. A comparison of taxon co-occurrence patterns for macro- and microorganisms. Ecology. 2007 Jun; 88(6):1345-53. PMID: 17601127.
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    52. Martiny J, Bohannan BJ, Brown JH, Colwell RK, Fuhrman JA, Green JL, Horner-Devine MC, Kane M, Krumins JA, Kuske CR, Morin PJ, Naeem S, Ovreås L, Reysenbach AL, Smith VH, Staley JT. Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol. 2006 Feb; 4(2):102-12. PMID: 16415926.
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