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Jennifer B. Martiny

Title(s)Professor, Ecology & Evolutionary Biology
Phone(949) 824-0487
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    Collapse Research 
    Collapse Research Activities and Funding
    T32 for Training in Microbiology and Infectious Diseases
    NIH/NIAID T32AI141346Aug 19, 2019 - Jul 31, 2024
    Role: Co-Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Chase AB, Arevalo P, Brodie EL, Polz MF, Karaoz U, Martiny JBH. Maintenance of Sympatric and Allopatric Populations in Free-Living Terrestrial Bacteria. MBio. 2019 Oct 29; 10(5). PMID: 31662456.
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    2. Khalili B, Weihe C, Kimball S, Schmidt KT, Martiny JBH. Optimization of a Method To Quantify Soil Bacterial Abundance by Flow Cytometry. mSphere. 2019 10 09; 4(5). PMID: 31597718.
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    3. Malik AA, Martiny JBH, Brodie EL, Martiny AC, Treseder KK, Allison SD. Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change. ISME J. 2019 Sep 25. PMID: 31554911.
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    4. Cavicchioli R, Ripple WJ, Timmis KN, Azam F, Bakken LR, Baylis M, Behrenfeld MJ, Boetius A, Boyd PW, Classen AT, Crowther TW, Danovaro R, Foreman CM, Huisman J, Hutchins DA, Jansson JK, Karl DM, Koskella B, Mark Welch DB, Martiny JBH, Moran MA, Orphan VJ, Reay DS, Remais JV, Rich VI, Singh BK, Stein LY, Stewart FJ, Sullivan MB, van Oppen MJH, Weaver SC, Webb EA, Webster NS. Scientists' warning to humanity: microorganisms and climate change. Nat Rev Microbiol. 2019 Sep; 17(9):569-586. PMID: 31213707.
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    5. Isobe K, Allison SD, Khalili B, Martiny AC, Martiny JBH. Phylogenetic conservation of bacterial responses to soil nitrogen addition across continents. Nat Commun. 2019 06 07; 10(1):2499. PMID: 31175309.
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    6. Albright MBN, Chase AB, Martiny JBH. Experimental Evidence that Stochasticity Contributes to Bacterial Composition and Functioning in a Decomposer Community. MBio. 2019 04 16; 10(2). PMID: 30992354.
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    7. Wandro S, Oliver A, Gallagher T, Weihe C, England W, Martiny JBH, Whiteson K. Predictable Molecular Adaptation of Coevolving Enterococcus faecium and Lytic Phage EfV12-phi1. Front Microbiol. 2018; 9:3192. PMID: 30766528.
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    8. Glassman SI, Weihe C, Li J, Albright MBN, Looby CI, Martiny AC, Treseder KK, Allison SD, Martiny JBH. Decomposition responses to climate depend on microbial community composition. Proc Natl Acad Sci U S A. 2018 11 20; 115(47):11994-11999. PMID: 30397146.
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    9. Chase AB, Gomez-Lunar Z, Lopez AE, Li J, Allison SD, Martiny AC, Martiny JBH. Emergence of soil bacterial ecotypes along a climate gradient. Environ Microbiol. 2018 11; 20(11):4112-4126. PMID: 30209883.
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    10. Albright MBN, Timalsina B, Martiny JBH, Dunbar J. Comparative Genomics of Nitrogen Cycling Pathways in Bacteria and Archaea. Microb Ecol. 2019 Apr; 77(3):597-606. PMID: 30105504.
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    11. Glassman SI, Martiny JBH. Broadscale Ecological Patterns Are Robust to Use of Exact Sequence Variants versus Operational Taxonomic Units. mSphere. 2018 07 18; 3(4). PMID: 30021874.
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    12. Baker NR, Khalili B, Martiny JBH, Allison SD. Microbial decomposers not constrained by climate history along a Mediterranean climate gradient in southern California. Ecology. 2018 06; 99(6):1441-1452. PMID: 29663355.
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    13. Martiny JBH, Walters KE. Towards a Natural History of Soil Bacterial Communities. Trends Microbiol. 2018 04; 26(4):250-252. PMID: 29523393.
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    14. Chase AB, Karaoz U, Brodie EL, Gomez-Lunar Z, Martiny AC, Martiny JBH. Microdiversity of an Abundant Terrestrial Bacterium Encompasses Extensive Variation in Ecologically Relevant Traits. MBio. 2017 11 14; 8(6). PMID: 29138307.
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    15. Albright MBN, Martiny JBH. Dispersal alters bacterial diversity and composition in a natural community. ISME J. 2018 01; 12(1):296-299. PMID: 29053150.
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    16. Dolan KL, Peña J, Allison SD, Martiny JB. Phylogenetic conservation of substrate use specialization in leaf litter bacteria. PLoS One. 2017; 12(3):e0174472. PMID: 28358894.
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    17. Chase AB, Arevalo P, Polz MF, Berlemont R, Martiny JB. Evidence for Ecological Flexibility in the Cosmopolitan Genus Curtobacterium. Front Microbiol. 2016; 7:1874. PMID: 27920771.
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    18. Marston MF, Martiny JB. Genomic diversification of marine cyanophages into stable ecotypes. Environ Microbiol. 2016 11; 18(11):4240-4253. PMID: 27696643.
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    19. Martiny JB, Martiny AC, Weihe C, Lu Y, Berlemont R, Brodie EL, Goulden ML, Treseder KK, Allison SD. Microbial legacies alter decomposition in response to simulated global change. ISME J. 2017 02; 11(2):490-499. PMID: 27740610.
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    20. Crummett LT, Puxty RJ, Weihe C, Marston MF, Martiny JBH. The genomic content and context of auxiliary metabolic genes in marine cyanomyoviruses. Virology. 2016 12; 499:219-229. PMID: 27693926.
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    21. Evans S, Martiny JB, Allison SD. Effects of dispersal and selection on stochastic assembly in microbial communities. ISME J. 2017 01; 11(1):176-185. PMID: 27494293.
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    22. Nelson MB, Chase AB, Martiny JB, Stocker R, Nguyen J, Lloyd K, Oshiro RT, Kearns DB, Schneider JP, Ringel PD, Basler M, Olson CA, Vuong HE, Hsiao EY, Roller BR, Ackermann M, Smillie C, Chien D, Alm E, Jermy AJ. The Microbial Olympics 2016. Nat Microbiol. 2016 07 26; 1(8):16122. PMID: 27573121.
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    23. Nelson MB, Martiny AC, Martiny JB. Global biogeography of microbial nitrogen-cycling traits in soil. Proc Natl Acad Sci U S A. 2016 07 19; 113(29):8033-40. PMID: 27432978.
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    24. Hanson CA, Marston MF, Martiny JB. Biogeographic Variation in Host Range Phenotypes and Taxonomic Composition of Marine Cyanophage Isolates. Front Microbiol. 2016; 7:983. PMID: 27446023.
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    25. Martiny JB. History Leaves Its Mark on Soil Bacterial Diversity. MBio. 2016 06 07; 7(3). PMID: 27273826.
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    26. Martiny JB, Jones SE, Lennon JT, Martiny AC. Microbiomes in light of traits: A phylogenetic perspective. Science. 2015 Nov 06; 350(6261):aac9323. PMID: 26542581.
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    27. Nelson MB, Berlemont R, Martiny AC, Martiny JB. Nitrogen Cycling Potential of a Grassland Litter Microbial Community. Appl Environ Microbiol. 2015 Oct; 81(20):7012-22. PMID: 26231641.
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    28. Amend AS, Martiny AC, Allison SD, Berlemont R, Goulden ML, Lu Y, Treseder KK, Weihe C, Martiny JB. Microbial response to simulated global change is phylogenetically conserved and linked with functional potential. ISME J. 2016 Jan; 10(1):109-18. PMID: 26046258.
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    29. Matulich KL, Weihe C, Allison SD, Amend AS, Berlemont R, Goulden ML, Kimball S, Martiny AC, Martiny JB. Temporal variation overshadows the response of leaf litter microbial communities to simulated global change. ISME J. 2015 Nov; 9(11):2477-89. PMID: 25978544.
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    30. Vivanco L, Irvine IC, Martiny JB. Nonlinear responses in salt marsh functioning to increased nitrogen addition. Ecology. 2015 Apr; 96(4):936-47. PMID: 26230015.
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    31. Amend AS, Matulich KL, Martiny JB. Nitrogen addition, not initial phylogenetic diversity, increases litter decomposition by fungal communities. Front Microbiol. 2015; 6:109. PMID: 25741330.
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    32. Matulich KL, Martiny JB. Microbial composition alters the response of litter decomposition to environmental change. Ecology. 2015 Jan; 96(1):154-63. PMID: 26236900.
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    33. Berlemont R, Allison SD, Weihe C, Lu Y, Brodie EL, Martiny JB, Martiny AC. Cellulolytic potential under environmental changes in microbial communities from grassland litter. Front Microbiol. 2014; 5:639. PMID: 25505459.
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    34. Sjöstedt J, Martiny JB, Munk P, Riemann L. Abundance of broad bacterial taxa in the sargasso sea explained by environmental conditions but not water mass. Appl Environ Microbiol. 2014 May; 80(9):2786-95. PMID: 24561593.
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    35. Nyyssönen M, Tran HM, Karaoz U, Weihe C, Hadi MZ, Martiny JB, Martiny AC, Brodie EL. Coupled high-throughput functional screening and next generation sequencing for identification of plant polymer decomposing enzymes in metagenomic libraries. Front Microbiol. 2013; 4:282. PMID: 24069019.
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    36. Hatosy SM, Martiny JB, Sachdeva R, Steele J, Fuhrman JA, Martiny AC. Beta diversity of marine bacteria depends on temporal scale. Ecology. 2013 Sep; 94(9):1898-904. PMID: 24279260.
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    37. Martiny JB, Riemann L, Marston MF, Middelboe M. Antagonistic coevolution of marine planktonic viruses and their hosts. Ann Rev Mar Sci. 2014; 6:393-414. PMID: 23987913.
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    38. Allison SD, Lu Y, Weihe C, Goulden ML, Martiny AC, Treseder KK, Martiny JB. Microbial abundance and composition influence litter decomposition response to environmental change. Ecology. 2013 Mar; 94(3):714-25. PMID: 23687897.
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    39. Marston MF, Taylor S, Sme N, Parsons RJ, Noyes TJ, Martiny JB. Marine cyanophages exhibit local and regional biogeography. Environ Microbiol. 2013 May; 15(5):1452-63. PMID: 23279166.
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    40. Shade A, Peter H, Allison SD, Baho DL, Berga M, Bürgmann H, Huber DH, Langenheder S, Lennon JT, Martiny JB, Matulich KL, Schmidt TM, Handelsman J. Fundamentals of microbial community resistance and resilience. Front Microbiol. 2012; 3:417. PMID: 23267351.
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    41. Reed HE, Martiny JB. Microbial composition affects the functioning of estuarine sediments. ISME J. 2013 Apr; 7(4):868-79. PMID: 23235294.
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    42. Hanson CA, Fuhrman JA, Horner-Devine MC, Martiny JB. Beyond biogeographic patterns: processes shaping the microbial landscape. Nat Rev Microbiol. 2012 May 14; 10(7):497-506. PMID: 22580365.
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    43. Irvine IC, Vivanco L, Bentley PN, Martiny JB. The effect of nitrogen enrichment on c(1)-cycling microorganisms and methane flux in salt marsh sediments. Front Microbiol. 2012; 3:90. PMID: 22470369.
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    44. Marston MF, Pierciey FJ, Shepard A, Gearin G, Qi J, Yandava C, Schuster SC, Henn MR, Martiny JB. Rapid diversification of coevolving marine Synechococcus and a virus. Proc Natl Acad Sci U S A. 2012 Mar 20; 109(12):4544-9. PMID: 22388749.
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    45. Kuznetsov YG, Chang SC, Credaroli A, Martiny J, McPherson A. An atomic force microscopy investigation of cyanophage structure. Micron. 2012 Dec; 43(12):1336-42. PMID: 22424715.
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    46. Irvine IC, Brigham CA, Suding KN, Martiny JB. The abundance of pink-pigmented facultative methylotrophs in the root zone of plant species in invaded coastal sage scrub habitat. PLoS One. 2012; 7(2):e31026. PMID: 22383990.
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    47. Martiny AC, Martiny JB, Weihe C, Field A, Ellis JC. Functional metagenomics reveals previously unrecognized diversity of antibiotic resistance genes in gulls. Front Microbiol. 2011; 2:238. PMID: 22347872.
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    48. Zinger L, Amaral-Zettler LA, Fuhrman JA, Horner-Devine MC, Huse SM, Welch DB, Martiny JB, Sogin M, Boetius A, Ramette A. Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems. PLoS One. 2011; 6(9):e24570. PMID: 21931760.
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    49. Martiny JB, Eisen JA, Penn K, Allison SD, Horner-Devine MC. Drivers of bacterial beta-diversity depend on spatial scale. Proc Natl Acad Sci U S A. 2011 May 10; 108(19):7850-4. PMID: 21518859.
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    50. Mohamed DJ, Martiny JB. Patterns of fungal diversity and composition along a salinity gradient. ISME J. 2011 Mar; 5(3):379-88. PMID: 20882058.
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    51. Kuznetsov YG, Martiny JB, McPherson A. Structural analysis of a Synechococcus myovirus S-CAM4 and infected cells by atomic force microscopy. J Gen Virol. 2010 Dec; 91(Pt 12):3095-104. PMID: 20739271.
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    52. Lage MD, Reed HE, Weihe C, Crain CM, Martiny JB. Nitrogen and phosphorus enrichment alter the composition of ammonia-oxidizing bacteria in salt marsh sediments. ISME J. 2010 Jul; 4(7):933-44. PMID: 20220792.
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    53. Allison SD, Martiny JB. Colloquium paper: resistance, resilience, and redundancy in microbial communities. Proc Natl Acad Sci U S A. 2008 Aug 12; 105 Suppl 1:11512-9. PMID: 18695234.
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    54. Lennon JT, Martiny JBH. Rapid evolution buffers ecosystem impacts of viruses in a microbial food web. Ecol Lett. 2008 Nov; 11(11):1178-1188. PMID: 18647331.
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    55. Shaw AK, Halpern AL, Beeson K, Tran B, Venter JC, Martiny JB. It's all relative: ranking the diversity of aquatic bacterial communities. Environ Microbiol. 2008 Sep; 10(9):2200-10. PMID: 18637951.
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    56. Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, Cochrane G, Cole J, Dawyndt P, De Vos P, DePamphilis C, Edwards R, Faruque N, Feldman R, Gilbert J, Gilna P, Glöckner FO, Goldstein P, Guralnick R, Haft D, Hancock D, Hermjakob H, Hertz-Fowler C, Hugenholtz P, Joint I, Kagan L, Kane M, Kennedy J, Kowalchuk G, Kottmann R, Kolker E, Kravitz S, Kyrpides N, Leebens-Mack J, Lewis SE, Li K, Lister AL, Lord P, Maltsev N, Markowitz V, Martiny J, Methe B, Mizrachi I, Moxon R, Nelson K, Parkhill J, Proctor L, White O, Sansone SA, Spiers A, Stevens R, Swift P, Taylor C, Tateno Y, Tett A, Turner S, Ussery D, Vaughan B, Ward N, Whetzel T, San Gil I, Wilson G, Wipat A. The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol. 2008 May; 26(5):541-7. PMID: 18464787.
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    57. Bradley DJ, Gilbert GS, Martiny JB. Pathogens promote plant diversity through a compensatory response. Ecol Lett. 2008 May; 11(5):461-9. PMID: 18312409.
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    58. Reed HE, Martiny JB. Testing the functional significance of microbial composition in natural communities. FEMS Microbiol Ecol. 2007 Nov; 62(2):161-70. PMID: 17937673.
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    59. Stoddard LI, Martiny JB, Marston MF. Selection and characterization of cyanophage resistance in marine Synechococcus strains. Appl Environ Microbiol. 2007 Sep; 73(17):5516-22. PMID: 17630310.
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    60. Lennon JT, Khatana SA, Marston MF, Martiny JB. Is there a cost of virus resistance in marine cyanobacteria? ISME J. 2007 Aug; 1(4):300-12. PMID: 18043641.
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    61. Horner-Devine MC, Silver JM, Leibold MA, Bohannan BJ, Colwell RK, Fuhrman JA, Green JL, Kuske CR, Martiny JB, Muyzer G, Ovreås L, Reysenbach AL, Smith VH. A comparison of taxon co-occurrence patterns for macro- and microorganisms. Ecology. 2007 Jun; 88(6):1345-53. PMID: 17601127.
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    62. Martiny JB, Bohannan BJ, Brown JH, Colwell RK, Fuhrman JA, Green JL, Horner-Devine MC, Kane M, Krumins JA, Kuske CR, Morin PJ, Naeem S, Ovreås L, Reysenbach AL, Smith VH, Staley JT. Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol. 2006 Feb; 4(2):102-12. PMID: 16415926.
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    63. Gad U, Hansen JL, Jacoby O, Martiny J, Voigt U. [Thoracic surgery in 2 Danish central hospitals]. Ugeskr Laeger. 1968 Feb 22; 130(8):339-43. PMID: 5676622.
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    64. Martiny J. [Enavid and jaundice. A diagnostic pitfall]. Ugeskr Laeger. 1966 Jan 06; 128(1):21. PMID: 5914574.
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