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Soil microbiome interventions for carbon sequestration and climate mitigation. mSystems. 2025 Jan 21; 10(1):e0112924.
Beattie GA, Edlund A, Esiobu N, Gilbert J, Nicolaisen MH, Jansson JK, Jensen P, Keiluweit M, Lennon JT, Martiny J, Minnis VR, Newman D, Peixoto R, Schadt C, van der Meer JR. PMID: 39692482; PMCID: PMC11748500.
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PubMed Mentions: Fields:
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Short-term dietary fiber interventions produce consistent gut microbiome responses across studies. mSystems. 2024 Jun 18; 9(6):e0013324.
Rodriguez CI, Isobe K, Martiny JBH. PMID: 38742890; PMCID: PMC11237734.
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PubMed Mentions:
3 Fields:
Translation:
HumansCells
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Reply to: Microbial dark matter could add uncertainties to metagenomic trait estimations. Nat Microbiol. 2024 Jun; 9(6):1431-1433.
Piton G, Allison SD, Bahram M, Hildebrand F, Martiny JBH, Treseder KK, Martiny AC. PMID: 38740930.
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PubMed Mentions:
1 Fields:
Translation:
Cells
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Priorities, opportunities, and challenges for integrating microorganisms into Earth system models for climate change prediction. mBio. 2024 May 08; 15(5):e0045524.
Lennon JT, Abramoff RZ, Allison SD, Burckhardt RM, DeAngelis KM, Dunne JP, Frey SD, Friedlingstein P, Hawkes CV, Hungate BA, Khurana S, Kivlin SN, Levine NM, Manzoni S, Martiny AC, Martiny JBH, Nguyen NK, Rawat M, Talmy D, Todd-Brown K, Vogt M, Wieder WR, Zakem EJ. PMID: 38526088; PMCID: PMC11078004.
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Translation:
HumansCells
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The contribution of plasmids to trait diversity in a soil bacterium. ISME Commun. 2024 Jan; 4(1):ycae025.
Finks SS, Moudgalya P, Weihe C, Martiny JBH. PMID: 38584646; PMCID: PMC10999282.
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PubMed Mentions:
1
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Investigating eco-evolutionary processes of microbial community assembly in the wild using a model leaf litter system. ISME J. 2024 Jan 08; 18(1).
Barbour KM, Martiny JBH. PMID: 38506671; PMCID: PMC11008689.
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PubMed Mentions: Fields:
Translation:
CellsPHPublic Health
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Bacterial population-level trade-offs between drought tolerance and resource acquisition traits impact decomposition. ISME J. 2024 Jan 08; 18(1).
Malik AA, Martiny JBH, Ribeiro A, Sheridan PO, Weihe C, Brodie EL, Allison SD. PMID: 39495619; PMCID: PMC11569415.
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PubMed Mentions: Fields:
Translation:
CellsPHPublic Health
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Life history strategies of soil bacterial communities across global terrestrial biomes. Nat Microbiol. 2023 Nov; 8(11):2093-2102.
Piton G, Allison SD, Bahram M, Hildebrand F, Martiny JBH, Treseder KK, Martiny AC. PMID: 37798477.
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PubMed Mentions:
12 Fields:
Translation:
CellsPHPublic Health
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Testing the contribution of dispersal to microbial succession following a wildfire. mSystems. 2023 Oct 26; 8(5):e0057923.
Barbour KM, Weihe C, Walters KE, Martiny JBH. PMID: 37747204; PMCID: PMC10654055.
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PubMed Mentions:
1 Fields:
Translation:
CellsPHPublic Health
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Desiccation induces varied responses within a soil bacterial genus. Environ Microbiol. 2023 Dec; 25(12):3075-3086.
Scales NC, Huynh KT, Weihe C, Martiny JBH. PMID: 37664956.
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PubMed Mentions:
3 Fields:
Translation:
Cells
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Short-term dietary fiber interventions produce consistent gut microbiome responses across studies. Res Sq. 2023 Aug 25.
Rodriguez CI, Isobe K, Martiny JBH. PMID: 37674721; PMCID: PMC10479438.
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PubMed Mentions:
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Curated and harmonized gut microbiome 16S rRNA amplicon data from dietary fiber intervention studies in humans. Sci Data. 2023 06 02; 10(1):346.
Rodriguez CI, Keshavarzian A, Hamaker BR, Liu F, Lunken GR, Rasmussen H, Zhou H, Tap J, Swanson KS, Ukhanova M, Leclerc M, Gotteland M, Navarrete P, Kovatcheva-Datchary P, Dahl WJ, Martiny JBH. PMID: 37268699; PMCID: PMC10238384.
View in:
PubMed Mentions:
3 Fields:
Translation:
Humans
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Investigating the eco-evolutionary response of microbiomes to environmental change. Ecol Lett. 2023 Sep; 26 Suppl 1:S81-S90.
Martiny JBH, Martiny AC, Brodie E, Chase AB, Rodríguez-Verdugo A, Treseder KK, Allison SD. PMID: 36965002.
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PubMed Mentions:
10 Fields:
-
Opportunities to advance the synthesis of ecology and evolution. Ecol Lett. 2023 Sep; 26 Suppl 1:S11-S15.
Loreau M, Jarne P, Martiny JBH. PMID: 36731905.
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PubMed Mentions:
4 Fields:
-
Functional significance of microbial diversity in arid soils: biological soil crusts and nitrogen fixation as a model system. FEMS Microbiol Ecol. 2023 01 24; 99(2).
Barrón-Sandoval A, Martiny JBH, Pérez-Carbajal T, Bullock SH, Leija A, Hernández G, Escalante AE. PMID: 36690342; PMCID: PMC9923382.
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PubMed Mentions: Fields:
Translation:
CellsPHPublic Health
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Plasmid-Encoded Traits Vary across Environments. mBio. 2023 02 28; 14(1):e0319122.
Finks SS, Martiny JBH. PMID: 36629415; PMCID: PMC9973032.
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PubMed Mentions:
4 Fields:
Translation:
HumansCells
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Towards quantifying microbial dispersal in the environment. Environ Microbiol. 2023 01; 25(1):137-142.
Barbour KM, Barrón-Sandoval A, Walters KE, Martiny JBH. PMID: 36308707; PMCID: PMC10100412.
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PubMed Mentions:
7 Fields:
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Routes and rates of bacterial dispersal impact surface soil microbiome composition and functioning. ISME J. 2022 10; 16(10):2295-2304.
Walters KE, Capocchi JK, Albright MBN, Hao Z, Brodie EL, Martiny JBH. PMID: 35778440; PMCID: PMC9477824.
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PubMed Mentions:
10 Fields:
Translation:
CellsPHPublic Health
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Differential Response of Bacterial Microdiversity to Simulated Global Change. Appl Environ Microbiol. 2022 03 22; 88(6):e0242921.
Scales NC, Chase AB, Finks SS, Malik AA, Weihe C, Allison SD, Martiny AC, Martiny JBH. PMID: 35108096; PMCID: PMC8939344.
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PubMed Mentions:
6 Fields:
Translation:
CellsPHPublic Health
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Adaptive differentiation and rapid evolution of a soil bacterium along a climate gradient. Proc Natl Acad Sci U S A. 2021 05 04; 118(18).
Chase AB, Weihe C, Martiny JBH. PMID: 33906949; PMCID: PMC8106337.
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PubMed Mentions:
31 Fields:
Translation:
CellsPHPublic Health
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High-Fiber, Whole-Food Dietary Intervention Alters the Human Gut Microbiome but Not Fecal Short-Chain Fatty Acids. mSystems. 2021 Mar 16; 6(2).
Oliver A, Chase AB, Weihe C, Orchanian SB, Riedel SF, Hendrickson CL, Lay M, Sewall JM, Martiny JBH, Whiteson K. PMID: 33727392; PMCID: PMC8546969.
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PubMed Mentions:
51 Fields:
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Alpha-, beta-, and gamma-diversity of bacteria varies across habitats. PLoS One. 2020; 15(9):e0233872.
Walters KE, Martiny JBH. PMID: 32966309; PMCID: PMC7510982.
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PubMed Mentions:
72 Fields:
Translation:
CellsPHPublic Health
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Cervicovaginal Microbiome Composition Is Associated with Metabolic Profiles in Healthy Pregnancy. mBio. 2020 08 25; 11(4).
Oliver A, LaMere B, Weihe C, Wandro S, Lindsay KL, Wadhwa PD, Mills DA, Pride DT, Fiehn O, Northen T, de Raad M, Li H, Martiny JBH, Lynch S, Whiteson K. PMID: 32843557; PMCID: PMC7448280.
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PubMed Mentions:
24 Fields:
Translation:
Humans
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Drought and plant litter chemistry alter microbial gene expression and metabolite production. ISME J. 2020 09; 14(9):2236-2247.
Malik AA, Swenson T, Weihe C, Morrison EW, Martiny JBH, Brodie EL, Northen TR, Allison SD. PMID: 32444813; PMCID: PMC7608424.
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PubMed Mentions:
24 Fields:
Translation:
Animals
-
Fiber Force: A Fiber Diet Intervention in an Advanced Course-Based Undergraduate Research Experience (CURE) Course. J Microbiol Biol Educ. 2020; 21(1).
Sewall JM, Oliver A, Denaro K, Chase AB, Weihe C, Lay M, Martiny JBH, Whiteson K. PMID: 32431776; PMCID: PMC7198227.
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PubMed Mentions:
8
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Conceptual challenges in microbial community ecology. Philos Trans R Soc Lond B Biol Sci. 2020 05 11; 375(1798):20190241.
Prosser JI, Martiny JBH. PMID: 32200750; PMCID: PMC7133534.
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PubMed Mentions:
5 Fields:
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Phylogenetic conservation of soil bacterial responses to simulated global changes. Philos Trans R Soc Lond B Biol Sci. 2020 05 11; 375(1798):20190242.
Isobe K, Bouskill NJ, Brodie EL, Sudderth EA, Martiny JBH. PMID: 32200749; PMCID: PMC7133522.
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PubMed Mentions:
23 Fields:
Translation:
PHPublic Health
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Evolutionary relationships among bifidobacteria and their hosts and environments. BMC Genomics. 2020 Jan 08; 21(1):26.
Rodriguez CI, Martiny JBH. PMID: 31914919; PMCID: PMC6950798.
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PubMed Mentions:
16 Fields:
Translation:
HumansAnimalsCells
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The emergence of microbiome centres. Nat Microbiol. 2020 01; 5(1):2-3.
Martiny JBH, Whiteson KL, Bohannan BJM, David LA, Hynson NA, McFall-Ngai M, Rawls JF, Schmidt TM, Abdo Z, Blaser MJ, Bordenstein S, Bréchot C, Bull CT, Dorrestein P, Eisen JA, Garcia-Pichel F, Gilbert J, Hofmockel KS, Holtz ML, Knight R, Mark Welch DB, McDonald D, Methé B, Mouncey NJ, Mueller NT, Pfister CA, Proctor L, Sachs JL. PMID: 31857734.
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PubMed Mentions:
6 Fields:
Translation:
HumansAnimals
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Maintenance of Sympatric and Allopatric Populations in Free-Living Terrestrial Bacteria. mBio. 2019 10 29; 10(5).
Chase AB, Arevalo P, Brodie EL, Polz MF, Karaoz U, Martiny JBH. PMID: 31662456; PMCID: PMC6819660.
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PubMed Mentions:
15 Fields:
Translation:
CellsPHPublic Health
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Optimization of a Method To Quantify Soil Bacterial Abundance by Flow Cytometry. mSphere. 2019 10 09; 4(5).
Khalili B, Weihe C, Kimball S, Schmidt KT, Martiny JBH. PMID: 31597718; PMCID: PMC6796974.
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PubMed Mentions:
9 Fields:
Translation:
CellsPHPublic Health
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Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change. ISME J. 2020 01; 14(1):1-9.
Malik AA, Martiny JBH, Brodie EL, Martiny AC, Treseder KK, Allison SD. PMID: 31554911; PMCID: PMC6908601.
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PubMed Mentions:
137 Fields:
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Scientists' warning to humanity: microorganisms and climate change. Nat Rev Microbiol. 2019 09; 17(9):569-586.
Cavicchioli R, Ripple WJ, Timmis KN, Azam F, Bakken LR, Baylis M, Behrenfeld MJ, Boetius A, Boyd PW, Classen AT, Crowther TW, Danovaro R, Foreman CM, Huisman J, Hutchins DA, Jansson JK, Karl DM, Koskella B, Mark Welch DB, Martiny JBH, Moran MA, Orphan VJ, Reay DS, Remais JV, Rich VI, Singh BK, Stein LY, Stewart FJ, Sullivan MB, van Oppen MJH, Weaver SC, Webb EA, Webster NS. PMID: 31213707; PMCID: PMC7136171.
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PubMed Mentions:
400 Fields:
Translation:
Humans
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Phylogenetic conservation of bacterial responses to soil nitrogen addition across continents. Nat Commun. 2019 06 07; 10(1):2499.
Isobe K, Allison SD, Khalili B, Martiny AC, Martiny JBH. PMID: 31175309; PMCID: PMC6555827.
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PubMed Mentions:
19 Fields:
Translation:
CellsPHPublic Health
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Experimental Evidence that Stochasticity Contributes to Bacterial Composition and Functioning in a Decomposer Community. mBio. 2019 04 16; 10(2).
Albright MBN, Chase AB, Martiny JBH. PMID: 30992354; PMCID: PMC6469972.
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PubMed Mentions:
8 Fields:
Translation:
AnimalsCellsPHPublic Health
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Predictable Molecular Adaptation of Coevolving Enterococcus faecium and Lytic Phage EfV12-phi1. Front Microbiol. 2018; 9:3192.
Wandro S, Oliver A, Gallagher T, Weihe C, England W, Martiny JBH, Whiteson K. PMID: 30766528; PMCID: PMC6365445.
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PubMed Mentions:
18
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Decomposition responses to climate depend on microbial community composition. Proc Natl Acad Sci U S A. 2018 11 20; 115(47):11994-11999.
Glassman SI, Weihe C, Li J, Albright MBN, Looby CI, Martiny AC, Treseder KK, Allison SD, Martiny JBH. PMID: 30397146; PMCID: PMC6255157.
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PubMed Mentions:
54 Fields:
Translation:
AnimalsCells
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Emergence of soil bacterial ecotypes along a climate gradient. Environ Microbiol. 2018 11; 20(11):4112-4126.
Chase AB, Gomez-Lunar Z, Lopez AE, Li J, Allison SD, Martiny AC, Martiny JBH. PMID: 30209883.
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PubMed Mentions:
17 Fields:
Translation:
CellsPHPublic Health
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Comparative Genomics of Nitrogen Cycling Pathways in Bacteria and Archaea. Microb Ecol. 2019 Apr; 77(3):597-606.
Albright MBN, Timalsina B, Martiny JBH, Dunbar J. PMID: 30105504.
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PubMed Mentions:
9 Fields:
Translation:
Cells
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Broadscale Ecological Patterns Are Robust to Use of Exact Sequence Variants versus Operational Taxonomic Units. mSphere. 2018 07 18; 3(4).
Glassman SI, Martiny JBH. PMID: 30021874; PMCID: PMC6052340.
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PubMed Mentions:
88 Fields:
Translation:
AnimalsCellsPHPublic Health
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Microbial decomposers not constrained by climate history along a Mediterranean climate gradient in southern California. Ecology. 2018 06; 99(6):1441-1452.
Baker NR, Khalili B, Martiny JBH, Allison SD. PMID: 29663355.
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PubMed Mentions:
6 Fields:
Translation:
AnimalsPHPublic Health
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Towards a Natural History of Soil Bacterial Communities. Trends Microbiol. 2018 04; 26(4):250-252.
Martiny JBH, Walters KE. PMID: 29523393.
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PubMed Mentions:
3 Fields:
Translation:
CellsPHPublic Health
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Microdiversity of an Abundant Terrestrial Bacterium Encompasses Extensive Variation in Ecologically Relevant Traits. mBio. 2017 11 14; 8(6).
Chase AB, Karaoz U, Brodie EL, Gomez-Lunar Z, Martiny AC, Martiny JBH. PMID: 29138307; PMCID: PMC5686540.
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PubMed Mentions:
29 Fields:
Translation:
CellsPHPublic Health
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Dispersal alters bacterial diversity and composition in a natural community. ISME J. 2018 01; 12(1):296-299.
Albright MBN, Martiny JBH. PMID: 29053150; PMCID: PMC5739015.
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PubMed Mentions:
24 Fields:
Translation:
Cells
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Phylogenetic conservation of substrate use specialization in leaf litter bacteria. PLoS One. 2017; 12(3):e0174472.
Dolan KL, Peña J, Allison SD, Martiny JB. PMID: 28358894; PMCID: PMC5373539.
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PubMed Mentions:
8 Fields:
Translation:
CellsPHPublic Health
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Evidence for Ecological Flexibility in the Cosmopolitan Genus Curtobacterium. Front Microbiol. 2016; 7:1874.
Chase AB, Arevalo P, Polz MF, Berlemont R, Martiny JB. PMID: 27920771; PMCID: PMC5118839.
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PubMed Mentions:
36
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Genomic diversification of marine cyanophages into stable ecotypes. Environ Microbiol. 2016 11; 18(11):4240-4253.
Marston MF, Martiny JB. PMID: 27696643.
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PubMed Mentions:
27 Fields:
Translation:
Cells
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Microbial legacies alter decomposition in response to simulated global change. ISME J. 2017 02; 11(2):490-499.
Martiny JB, Martiny AC, Weihe C, Lu Y, Berlemont R, Brodie EL, Goulden ML, Treseder KK, Allison SD. PMID: 27740610; PMCID: PMC5270563.
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PubMed Mentions:
37 Fields:
Translation:
AnimalsCells
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The genomic content and context of auxiliary metabolic genes in marine cyanomyoviruses. Virology. 2016 12; 499:219-229.
Crummett LT, Puxty RJ, Weihe C, Marston MF, Martiny JBH. PMID: 27693926.
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PubMed Mentions:
56 Fields:
Translation:
Cells
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Effects of dispersal and selection on stochastic assembly in microbial communities. ISME J. 2017 01; 11(1):176-185.
Evans S, Martiny JB, Allison SD. PMID: 27494293; PMCID: PMC5315486.
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PubMed Mentions:
103 Fields:
Translation:
Cells
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The Microbial Olympics 2016. Nat Microbiol. 2016 07 26; 1(8):16122.
Nelson MB, Chase AB, Martiny JB, Stocker R, Nguyen J, Lloyd K, Oshiro RT, Kearns DB, Schneider JP, Ringel PD, Basler M, Olson CA, Vuong HE, Hsiao EY, Roller BR, Ackermann M, Smillie C, Chien D, Alm E, Jermy AJ. PMID: 27573121; PMCID: PMC6961809.
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PubMed Mentions:
3 Fields:
Translation:
HumansCells
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Global biogeography of microbial nitrogen-cycling traits in soil. Proc Natl Acad Sci U S A. 2016 07 19; 113(29):8033-40.
Nelson MB, Martiny AC, Martiny JB. PMID: 27432978; PMCID: PMC4961168.
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PubMed Mentions:
118 Fields:
Translation:
CellsPHPublic Health
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Biogeographic Variation in Host Range Phenotypes and Taxonomic Composition of Marine Cyanophage Isolates. Front Microbiol. 2016; 7:983.
Hanson CA, Marston MF, Martiny JB. PMID: 27446023; PMCID: PMC4919323.
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PubMed Mentions:
14
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History Leaves Its Mark on Soil Bacterial Diversity. mBio. 2016 06 07; 7(3).
Martiny JB. PMID: 27273826; PMCID: PMC4959671.
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PubMed Mentions:
5 Fields:
Translation:
CellsPHPublic Health
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Microbiomes in light of traits: A phylogenetic perspective. Science. 2015 Nov 06; 350(6261):aac9323.
Martiny JB, Jones SE, Lennon JT, Martiny AC. PMID: 26542581.
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PubMed Mentions:
238 Fields:
Translation:
HumansCells
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Nitrogen Cycling Potential of a Grassland Litter Microbial Community. Appl Environ Microbiol. 2015 Oct; 81(20):7012-22.
Nelson MB, Berlemont R, Martiny AC, Martiny JB. PMID: 26231641; PMCID: PMC4579426.
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PubMed Mentions:
20 Fields:
Translation:
CellsPHPublic Health
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Microbial response to simulated global change is phylogenetically conserved and linked with functional potential. ISME J. 2016 Jan; 10(1):109-18.
Amend AS, Martiny AC, Allison SD, Berlemont R, Goulden ML, Lu Y, Treseder KK, Weihe C, Martiny JB. PMID: 26046258; PMCID: PMC4681869.
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PubMed Mentions:
45 Fields:
Translation:
AnimalsCellsPHPublic Health
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Temporal variation overshadows the response of leaf litter microbial communities to simulated global change. ISME J. 2015 Nov; 9(11):2477-89.
Matulich KL, Weihe C, Allison SD, Amend AS, Berlemont R, Goulden ML, Kimball S, Martiny AC, Martiny JB. PMID: 25978544; PMCID: PMC4611511.
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PubMed Mentions:
39 Fields:
Translation:
AnimalsCellsPHPublic Health
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Nonlinear responses in salt marsh functioning to increased nitrogen addition. Ecology. 2015 Apr; 96(4):936-47.
Vivanco L, Irvine IC, Martiny JB. PMID: 26230015.
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PubMed Mentions:
4 Fields:
Translation:
Animals
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Nitrogen addition, not initial phylogenetic diversity, increases litter decomposition by fungal communities. Front Microbiol. 2015; 6:109.
Amend AS, Matulich KL, Martiny JB. PMID: 25741330; PMCID: PMC4332350.
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PubMed Mentions:
6
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Microbial composition alters the response of litter decomposition to environmental change. Ecology. 2015 Jan; 96(1):154-63.
Matulich KL, Martiny JB. PMID: 26236900.
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PubMed Mentions:
26 Fields:
Translation:
PHPublic Health
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Cellulolytic potential under environmental changes in microbial communities from grassland litter. Front Microbiol. 2014; 5:639.
Berlemont R, Allison SD, Weihe C, Lu Y, Brodie EL, Martiny JB, Martiny AC. PMID: 25505459; PMCID: PMC4243572.
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PubMed Mentions:
35
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Abundance of broad bacterial taxa in the sargasso sea explained by environmental conditions but not water mass. Appl Environ Microbiol. 2014 May; 80(9):2786-95.
Sjöstedt J, Martiny JB, Munk P, Riemann L. PMID: 24561593; PMCID: PMC3993294.
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PubMed Mentions:
6 Fields:
Translation:
Cells
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Coupled high-throughput functional screening and next generation sequencing for identification of plant polymer decomposing enzymes in metagenomic libraries. Front Microbiol. 2013; 4:282.
Nyyssönen M, Tran HM, Karaoz U, Weihe C, Hadi MZ, Martiny JB, Martiny AC, Brodie EL. PMID: 24069019; PMCID: PMC3779933.
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PubMed Mentions:
23
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Beta diversity of marine bacteria depends on temporal scale. Ecology. 2013 Sep; 94(9):1898-904.
Hatosy SM, Martiny JB, Sachdeva R, Steele J, Fuhrman JA, Martiny AC. PMID: 24279260.
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PubMed Mentions:
28 Fields:
Translation:
CellsPHPublic Health
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Antagonistic coevolution of marine planktonic viruses and their hosts. Ann Rev Mar Sci. 2014; 6:393-414.
Martiny JB, Riemann L, Marston MF, Middelboe M. PMID: 23987913.
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PubMed Mentions:
38 Fields:
Translation:
Cells
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Microbial abundance and composition influence litter decomposition response to environmental change. Ecology. 2013 Mar; 94(3):714-25.
Allison SD, Lu Y, Weihe C, Goulden ML, Martiny AC, Treseder KK, Martiny JB. PMID: 23687897.
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PubMed Mentions:
83 Fields:
Translation:
AnimalsCellsPHPublic Health
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Marine cyanophages exhibit local and regional biogeography. Environ Microbiol. 2013 May; 15(5):1452-63.
Marston MF, Taylor S, Sme N, Parsons RJ, Noyes TJ, Martiny JB. PMID: 23279166.
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PubMed Mentions:
20 Fields:
Translation:
Cells
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Fundamentals of microbial community resistance and resilience. Front Microbiol. 2012; 3:417.
Shade A, Peter H, Allison SD, Baho DL, Berga M, Bürgmann H, Huber DH, Langenheder S, Lennon JT, Martiny JB, Matulich KL, Schmidt TM, Handelsman J. PMID: 23267351; PMCID: PMC3525951.
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PubMed Mentions:
460
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Microbial composition affects the functioning of estuarine sediments. ISME J. 2013 Apr; 7(4):868-79.
Reed HE, Martiny JB. PMID: 23235294; PMCID: PMC3603390.
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PubMed Mentions:
31 Fields:
Translation:
Cells
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Beyond biogeographic patterns: processes shaping the microbial landscape. Nat Rev Microbiol. 2012 May 14; 10(7):497-506.
Hanson CA, Fuhrman JA, Horner-Devine MC, Martiny JB. PMID: 22580365.
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PubMed Mentions:
500 Fields:
Translation:
Cells
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The effect of nitrogen enrichment on c(1)-cycling microorganisms and methane flux in salt marsh sediments. Front Microbiol. 2012; 3:90.
Irvine IC, Vivanco L, Bentley PN, Martiny JB. PMID: 22470369; PMCID: PMC3307020.
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PubMed Mentions:
7
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Rapid diversification of coevolving marine Synechococcus and a virus. Proc Natl Acad Sci U S A. 2012 Mar 20; 109(12):4544-9.
Marston MF, Pierciey FJ, Shepard A, Gearin G, Qi J, Yandava C, Schuster SC, Henn MR, Martiny JB. PMID: 22388749; PMCID: PMC3311363.
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PubMed Mentions:
94 Fields:
Translation:
CellsPHPublic Health
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An atomic force microscopy investigation of cyanophage structure. Micron. 2012 Dec; 43(12):1336-42.
Kuznetsov YG, Chang SC, Credaroli A, Martiny J, McPherson A. PMID: 22424715.
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PubMed Mentions:
6 Fields:
Translation:
Cells
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The abundance of pink-pigmented facultative methylotrophs in the root zone of plant species in invaded coastal sage scrub habitat. PLoS One. 2012; 7(2):e31026.
Irvine IC, Brigham CA, Suding KN, Martiny JB. PMID: 22383990; PMCID: PMC3286463.
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PubMed Mentions:
1 Fields:
Translation:
AnimalsCells
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Functional metagenomics reveals previously unrecognized diversity of antibiotic resistance genes in gulls. Front Microbiol. 2011; 2:238.
Martiny AC, Martiny JB, Weihe C, Field A, Ellis JC. PMID: 22347872; PMCID: PMC3275322.
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PubMed Mentions:
24
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Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems. PLoS One. 2011; 6(9):e24570.
Zinger L, Amaral-Zettler LA, Fuhrman JA, Horner-Devine MC, Huse SM, Welch DB, Martiny JB, Sogin M, Boetius A, Ramette A. PMID: 21931760; PMCID: PMC3169623.
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PubMed Mentions:
228 Fields:
Translation:
CellsPHPublic Health
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Drivers of bacterial beta-diversity depend on spatial scale. Proc Natl Acad Sci U S A. 2011 May 10; 108(19):7850-4.
Martiny JB, Eisen JA, Penn K, Allison SD, Horner-Devine MC. PMID: 21518859; PMCID: PMC3093525.
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234 Fields:
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Cells
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Patterns of fungal diversity and composition along a salinity gradient. ISME J. 2011 Mar; 5(3):379-88.
Mohamed DJ, Martiny JB. PMID: 20882058; PMCID: PMC3105720.
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PubMed Mentions:
44 Fields:
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Animals
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Structural analysis of a Synechococcus myovirus S-CAM4 and infected cells by atomic force microscopy. J Gen Virol. 2010 Dec; 91(Pt 12):3095-104.
Kuznetsov YG, Martiny JB, McPherson A. PMID: 20739271.
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PubMed Mentions:
4 Fields:
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Cells
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Nitrogen and phosphorus enrichment alter the composition of ammonia-oxidizing bacteria in salt marsh sediments. ISME J. 2010 Jul; 4(7):933-44.
Lage MD, Reed HE, Weihe C, Crain CM, Martiny JB. PMID: 20220792.
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11 Fields:
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Cells
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Colloquium paper: resistance, resilience, and redundancy in microbial communities. Proc Natl Acad Sci U S A. 2008 Aug 12; 105 Suppl 1:11512-9.
Allison SD, Martiny JB. PMID: 18695234; PMCID: PMC2556421.
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701 Fields:
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Rapid evolution buffers ecosystem impacts of viruses in a microbial food web. Ecol Lett. 2008 Nov; 11(11):1178-1188.
Lennon JT, Martiny JBH. PMID: 18647331.
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29 Fields:
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Cells
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It's all relative: ranking the diversity of aquatic bacterial communities. Environ Microbiol. 2008 Sep; 10(9):2200-10.
Shaw AK, Halpern AL, Beeson K, Tran B, Venter JC, Martiny JB. PMID: 18637951.
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PubMed Mentions:
72 Fields:
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CellsPHPublic Health
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The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol. 2008 May; 26(5):541-7.
Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, Ashburner M, Axelrod N, Baldauf S, Ballard S, Boore J, Cochrane G, Cole J, Dawyndt P, De Vos P, DePamphilis C, Edwards R, Faruque N, Feldman R, Gilbert J, Gilna P, Glöckner FO, Goldstein P, Guralnick R, Haft D, Hancock D, Hermjakob H, Hertz-Fowler C, Hugenholtz P, Joint I, Kagan L, Kane M, Kennedy J, Kowalchuk G, Kottmann R, Kolker E, Kravitz S, Kyrpides N, Leebens-Mack J, Lewis SE, Li K, Lister AL, Lord P, Maltsev N, Markowitz V, Martiny J, Methe B, Mizrachi I, Moxon R, Nelson K, Parkhill J, Proctor L, White O, Sansone SA, Spiers A, Stevens R, Swift P, Taylor C, Tateno Y, Tett A, Turner S, Ussery D, Vaughan B, Ward N, Whetzel T, San Gil I, Wilson G, Wipat A. PMID: 18464787; PMCID: PMC2409278.
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794 Fields:
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Pathogens promote plant diversity through a compensatory response. Ecol Lett. 2008 May; 11(5):461-9.
Bradley DJ, Gilbert GS, Martiny JB. PMID: 18312409.
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PubMed Mentions:
16 Fields:
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AnimalsCells
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Testing the functional significance of microbial composition in natural communities. FEMS Microbiol Ecol. 2007 Nov; 62(2):161-70.
Reed HE, Martiny JB. PMID: 17937673.
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PubMed Mentions:
57 Fields:
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PHPublic Health
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Selection and characterization of cyanophage resistance in marine Synechococcus strains. Appl Environ Microbiol. 2007 Sep; 73(17):5516-22.
Stoddard LI, Martiny JB, Marston MF. PMID: 17630310; PMCID: PMC2042077.
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27 Fields:
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Cells
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Is there a cost of virus resistance in marine cyanobacteria? ISME J. 2007 Aug; 1(4):300-12.
Lennon JT, Khatana SA, Marston MF, Martiny JB. PMID: 18043641.
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PubMed Mentions:
62 Fields:
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CellsPHPublic Health
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A comparison of taxon co-occurrence patterns for macro- and microorganisms. Ecology. 2007 Jun; 88(6):1345-53.
Horner-Devine MC, Silver JM, Leibold MA, Bohannan BJ, Colwell RK, Fuhrman JA, Green JL, Kuske CR, Martiny JB, Muyzer G, Ovreås L, Reysenbach AL, Smith VH. PMID: 17601127.
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PubMed Mentions:
76 Fields:
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Animals
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Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol. 2006 Feb; 4(2):102-12.
Martiny JB, Bohannan BJ, Brown JH, Colwell RK, Fuhrman JA, Green JL, Horner-Devine MC, Kane M, Krumins JA, Kuske CR, Morin PJ, Naeem S, Ovreås L, Reysenbach AL, Smith VH, Staley JT. PMID: 16415926.
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PubMed Mentions:
834 Fields:
Translation:
AnimalsCells