Michael McClelland

Title(s)Professor, Microbiology and Molecular Genetics
SchoolSchool of Medicine
Address1001 Health Sciences Road
Irvine CA 92697-3950
Phone(858) 621-3906
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    Collapse Research 
    Collapse Research Activities and Funding
    Barcoding a Salmonella gene knockout library
    NIH R03AI139557Aug 2, 2019 - Jul 31, 2021
    Role: Principal Investigator
    Salmonella Genes Associated with Colonization of Specific Hosts
    NIH R01AI075093Jul 1, 2009 - Apr 30, 2012
    Role: Principal Investigator
    Affymetrix GSC3000 microarray scanner
    NIH S10RR021107Jan 14, 2005 - Jan 13, 2006
    Role: Principal Investigator
    Salmonella Gene Expression in Complex Environments
    NIH R21AI057733Sep 30, 2004 - Sep 30, 2006
    Role: Principal Investigator
    REDUCED COMPLEXITY CDNA PROBES
    NIH R33CA081667Apr 15, 1999 - Mar 31, 2003
    Role: Principal Investigator
    RNA FINGERPRINTS--DIFFERENTIAL GENE EXPRESSION IN BRAIN
    NIH R01NS033377Sep 30, 1994 - Sep 29, 1997
    Role: Principal Investigator
    Arrays and Targets for Nascent Transcripts
    NIH R01CA068822Mar 15, 1992 - Jun 30, 2010
    Role: Principal Investigator
    GENETIC MAPPING IN THE MOUSE BY PCR FINGERPRINTING
    NIH R01HG000456Mar 15, 1992 - May 31, 1995
    Role: Principal Investigator
    GENETIC MAPPING BY PCR FINGERPRINTING
    NIH R55HG000456Sep 30, 1991 - Mar 14, 1992
    Role: Principal Investigator
    Comparative Genome Analysis of Salmonella Species
    NIH R01AI034829Dec 15, 1989 - Feb 28, 2008
    Role: Principal Investigator
    ENZYMES INVOLVED IN METHYLASE/DPNI CLEAVAGE STRATEGIES
    NIH R01HG000106Dec 15, 1989 - Nov 30, 1992
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Peeling back the many layers of competitive exclusion. Front Microbiol. 2024; 15:1342887. Maurer JJ, Cheng Y, Pedroso A, Thompson KK, Akter S, Kwan T, Morota G, Kinstler S, Porwollik S, McClelland M, Escalante-Semerena JC, Lee MD. PMID: 38591029; PMCID: PMC11000858.
      View in: PubMed   Mentions:
    2. A genome-wide collection of barcoded single-gene deletion mutants in Salmonella enterica serovar Typhimurium. PLoS One. 2024; 19(3):e0298419. Porwollik S, Chu W, Desai PT, McClelland M. PMID: 38452024; PMCID: PMC10919679.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    3. Intraspecies competition among Salmonella enterica isolates in the lettuce leaf apoplast. Front Plant Sci. 2024; 15:1302047. Jacob C, Student J, Bridges DF, Chu W, Porwollik S, McClelland M, Melotto M. PMID: 38352648; PMCID: PMC10861783.
      View in: PubMed   Mentions:
    4. Byproducts of inflammatory radical metabolism provide transient nutrient niches for microbes in the inflamed gut. bioRxiv. 2023 Dec 08. Spiga L, Winter MG, Muramatsu MK, Rojas VK, Chanin RB, Zhu W, Hughes ER, Taylor SJ, Faber F, Porwollik S, Carvalho TF, Qin T, Santos RL, Andrews-Polymenis H, McClelland M, Winter SE. PMID: 38106073; PMCID: PMC10723490.
      View in: PubMed   Mentions:
    5. Formate oxidation in the intestinal mucus layer enhances fitness of Salmonella enterica serovar Typhimurium. mBio. 2023 08 31; 14(4):e0092123. Winter MG, Hughes ER, Muramatsu MK, Jimenez AG, Chanin RB, Spiga L, Gillis CC, McClelland M, Andrews-Polymenis H, Winter SE. PMID: 37498116; PMCID: PMC10470504.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    6. Arginine Metabolism Powers Salmonella Resistance to Oxidative Stress. Infect Immun. 2023 Jun 15; 91(6):e0012023. Margolis A, Liu L, Porwollik S, Till JKA, Chu W, McClelland M, Vázquez-Torres A. PMID: 37191509; PMCID: PMC10269097.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    7. Strain-Specific Gifsy-1 Prophage Genes Are Determinants for Expression of the RNA Repair Operon during the SOS Response in Salmonella enterica Serovar Typhimurium. J Bacteriol. 2023 01 26; 205(1):e0026222. Kurasz JE, Crawford MC, Porwollik S, Gregory O, Tadlock KR, Balding EC, Weinert EE, McClelland M, Karls AC. PMID: 36622230; PMCID: PMC9879122.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    8. Spatial Profiling of the Prostate Cancer Tumor Microenvironment Reveals Multiple Differences in Gene Expression and Correlation with Recurrence Risk. Cancers (Basel). 2022 Oct 08; 14(19). Kumar V, Randhawa P, Bilodeau R, Mercola D, McClelland M, Agrawal A, Nguyen J, Castro P, Ittmann MM, Rahmatpanah F. PMID: 36230846; PMCID: PMC9562240.
      View in: PubMed   Mentions: 2  
    9. Cardiolipin Biosynthesis Genes Are Not Required for Salmonella enterica Serovar Typhimurium Pathogenesis in C57BL/6J Mice. Microbiol Spectr. 2022 06 29; 10(3):e0261721. Cian MB, Mettlach JA, Zahn AE, Giordano NP, Minor KE, McClelland M, Dalebroux ZD. PMID: 35638781; PMCID: PMC9241728.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    10. The ancestral stringent response potentiator, DksA has been adapted throughout Salmonella evolution to orchestrate the expression of metabolic, motility, and virulence pathways. Gut Microbes. 2022 Jan-Dec; 14(1):1997294. Cohen H, Adani B, Cohen E, Piscon B, Azriel S, Desai P, Bähre H, McClelland M, Rahav G, Gal-Mor O. PMID: 34923900; PMCID: PMC8726615.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    11. Expression of Endogenous Retroviral RNA in Prostate Tumors has Prognostic Value and Shows Differences among Americans of African Versus European/Middle Eastern Ancestry. Cancers (Basel). 2021 Dec 17; 13(24). Kumar V, McClelland M, Nguyen J, De Robles G, Ittmann M, Castro P, Mercola D, Jia Z, Rahmatpanah F. PMID: 34944967; PMCID: PMC8699453.
      View in: PubMed   Mentions: 3  
    12. RNA expression differences in prostate tumors and tumor-adjacent stroma between Black and White Americans. Oncotarget. 2021 Jul 20; 12(15):1457-1469. Rahmatpanah F, Robles G, Lilly M, Keane T, Kumar V, Mercola D, Randhawa P, McClelland M. PMID: 34316327; PMCID: PMC8310667.
      View in: PubMed   Mentions: 8     Fields:    
    13. Eradication of Intracellular Salmonella Typhimurium by Polyplexes of Acid-Transforming Chitosan and Fragment DNA. Macromol Biosci. 2021 07; 21(7):e2000408. Edson JA, Chu W, Porwollik S, Tran K, Iribe N, McClelland M, Kwon YJ. PMID: 33870627; PMCID: PMC8295212.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    14. The multi-drug efflux system AcrABZ-TolC is essential for infection of Salmonella Typhimurium by the flagellum-dependent bacteriophage Chi. J Virol. 2021 05 10; 95(11). Esteves NC, Porwollik S, McClelland M, Scharf BE. PMID: 33731456; PMCID: PMC8139690.
      View in: PubMed   Mentions: 13     Fields:    
    15. Transcriptome Analysis of Ovarian and Uterine Clear Cell Malignancies. Front Oncol. 2020; 10:598579. Alldredge J, Randall L, De Robles G, Agrawal A, Mercola D, Liu M, Randhawa P, Edwards R, McClelland M, Rahmatpanah F. PMID: 33415077; PMCID: PMC7784081.
      View in: PubMed   Mentions: 9  
    16. Mechanisms of Salmonella Attachment and Survival on In-Shell Black Peppercorns, Almonds, and Hazelnuts. Front Microbiol. 2020; 11:582202. Li Y, Salazar JK, He Y, Desai P, Porwollik S, Chu W, Paola PS, Tortorello ML, Juarez O, Feng H, McClelland M, Zhang W. PMID: 33193218; PMCID: PMC7644838.
      View in: PubMed   Mentions: 3  
    17. Import of Aspartate and Malate by DcuABC Drives H2/Fumarate Respiration to Promote Initial Salmonella Gut-Lumen Colonization in Mice. Cell Host Microbe. 2020 06 10; 27(6):922-936.e6. Nguyen BD, Cuenca V M, Hartl J, Gül E, Bauer R, Meile S, Rüthi J, Margot C, Heeb L, Besser F, Escriva PP, Fetz C, Furter M, Laganenka L, Keller P, Fuchs L, Christen M, Porwollik S, McClelland M, Vorholt JA, Sauer U, Sunagawa S, Christen B, Hardt WD. PMID: 32416061; PMCID: PMC7292772.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    18. Identification of Novel Genes Mediating Survival of Salmonella on Low-Moisture Foods via Transposon Sequencing Analysis. Front Microbiol. 2020; 11:726. Jayeola V, McClelland M, Porwollik S, Chu W, Farber J, Kathariou S. PMID: 32499760; PMCID: PMC7242855.
      View in: PubMed   Mentions: 11  
    19. Glycolytic reprograming in Salmonella counters NOX2-mediated dissipation of ΔpH. Nat Commun. 2020 04 14; 11(1):1783. Chakraborty S, Liu L, Fitzsimmons L, Porwollik S, Kim JS, Desai P, McClelland M, Vazquez-Torres A. PMID: 32286292; PMCID: PMC7156505.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    20. SpoT Induces Intracellular Salmonella Virulence Programs in the Phagosome. mBio. 2020 02 25; 11(1). Fitzsimmons LF, Liu L, Kant S, Kim JS, Till JK, Jones-Carson J, Porwollik S, McClelland M, Vazquez-Torres A. PMID: 32098823; PMCID: PMC7042702.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    21. Salmonella enterica Serovar Typhimurium 14028s Genomic Regions Required for Colonization of Lettuce Leaves. Front Microbiol. 2020; 11:6. Montano J, Rossidivito G, Torreano J, Porwollik S, Sela Saldinger S, McClelland M, Melotto M. PMID: 32038592; PMCID: PMC6993584.
      View in: PubMed   Mentions: 9  
    22. Genomic comparison of diverse Salmonella serovars isolated from swine. PLoS One. 2019; 14(11):e0224518. Gupta SK, Sharma P, McMillan EA, Jackson CR, Hiott LM, Woodley T, Humayoun SB, Barrett JB, Frye JG, McClelland M. PMID: 31675365; PMCID: PMC6824618.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    23. Genome Sequence of Pigmented Siderophore-Producing Strain Serratia marcescens SM6. Microbiol Resour Announc. 2019 May 02; 8(18). Khilyas IV, Tursunov KA, Shirshikova TV, Kamaletdinova LK, Matrosova LE, Desai PT, McClelland M, Bogomolnaya LM. PMID: 31048396; PMCID: PMC6498229.
      View in: PubMed   Mentions: 7  
    24. Correction: Airway epithelial cells prime plasmacytoid dendritic cells to respond to pathogens via secretion of growth factors. Mucosal Immunol. 2019 05; 12(3):841. Rahmatpanah F, Agrawal S, Jaiswal N, Nguyen HM, McClelland M, Agrawal A. PMID: 30705377; PMCID: PMC7608114.
      View in: PubMed   Mentions:    Fields:    
    25. Antimicrobial Resistance Genes, Cassettes, and Plasmids Present in Salmonella enterica Associated With United States Food Animals. Front Microbiol. 2019; 10:832. McMillan EA, Gupta SK, Williams LE, Jové T, Hiott LM, Woodley TA, Barrett JB, Jackson CR, Wasilenko JL, Simmons M, Tillman GE, McClelland M, Frye JG. PMID: 31057528; PMCID: PMC6479191.
      View in: PubMed   Mentions: 56  
    26. Correction: Contribution of the Cpx envelope stress system to metabolism and virulence regulation in Salmonella enterica serovar Typhimurium. PLoS One. 2019; 14(2):e0213297. Subramaniam S, Müller VS, Hering NA, Mollenkopf H, Becker D, Heroven AK, Dersch P, Pohlmann A, Tedin K, Porwollik S, McClelland M, Meyer TF, Hunke S. PMID: 30811500; PMCID: PMC6392289.
      View in: PubMed   Mentions:    Fields:    
    27. Discovery of Salmonella trehalose phospholipids reveals functional convergence with mycobacteria. J Exp Med. 2019 04 01; 216(4):757-771. Reinink P, Buter J, Mishra VK, Ishikawa E, Cheng TY, Willemsen PTJ, Porwollik S, Brennan PJ, Heinz E, Mayfield JA, Dougan G, van Els CA, Cerundolo V, Napolitani G, Yamasaki S, Minnaard AJ, McClelland M, Moody DB, Van Rhijn I. PMID: 30804000; PMCID: PMC6446866.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    28. Contribution of the Cpx envelope stress system to metabolism and virulence regulation in Salmonella enterica serovar Typhimurium. PLoS One. 2019; 14(2):e0211584. Subramaniam S, Müller VS, Hering NA, Mollenkopf H, Becker D, Heroven AK, Dersch P, Pohlmann A, Tedin K, Porwollik S, McClelland M, Meyer TF, Hunke S. PMID: 30716090; PMCID: PMC6361445.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    29. A macrophage-based screen identifies antibacterial compounds selective for intracellular Salmonella Typhimurium. Nat Commun. 2019 01 14; 10(1):197. Ellis MJ, Tsai CN, Johnson JW, French S, Elhenawy W, Porwollik S, Andrews-Polymenis H, McClelland M, Magolan J, Coombes BK, Brown ED. PMID: 30643129; PMCID: PMC6331611.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansAnimalsCells
    30. Zinc-dependent substrate-level phosphorylation powers Salmonella growth under nitrosative stress of the innate host response. PLoS Pathog. 2018 10; 14(10):e1007388. Fitzsimmons L, Liu L, Porwollik S, Chakraborty S, Desai P, Tapscott T, Henard C, McClelland M, Vazquez-Torres A. PMID: 30365536; PMCID: PMC6221366.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    31. Airway epithelial cells prime plasmacytoid dendritic cells to respond to pathogens via secretion of growth factors. Mucosal Immunol. 2019 01; 12(1):77-84. Rahmatpanah F, Agrawal S, Jaiswal N, Nguyen HM, McClelland M, Agrawal A. PMID: 30279511; PMCID: PMC6301110.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    32. Multidrug resistant Mannheimia haemolytica isolated from high-risk beef stocker cattle after antimicrobial metaphylaxis and treatment for bovine respiratory disease. Vet Microbiol. 2018 Jul; 221:143-152. Woolums AR, Karisch BB, Frye JG, Epperson W, Smith DR, Blanton J, Austin F, Kaplan R, Hiott L, Woodley T, Gupta SK, Jackson CR, McClelland M. PMID: 29981701.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    33. Erratum for George et al., "Interactions of Salmonella enterica Serovar Typhimurium and Pectobacterium carotovorum within a Tomato Soft Rot". Appl Environ Microbiol. 2018 06 15; 84(12). George AS, Cox CE, Desai P, Porwollik S, Chu W, de Moraes MH, McClelland M, Brandl MT, Teplitski M. PMID: 29853470; PMCID: PMC5981059.
      View in: PubMed   Mentions:    Fields:    
    34. Genome-Wide Comparative Functional Analyses Reveal Adaptations of Salmonella sv. Newport to a Plant Colonization Lifestyle. Front Microbiol. 2018; 9:877. de Moraes MH, Soto EB, Salas González I, Desai P, Chu W, Porwollik S, McClelland M, Teplitski M. PMID: 29867794; PMCID: PMC5968271.
      View in: PubMed   Mentions: 11  
    35. Neutral barcoding of genomes reveals the dynamics of Salmonella colonization in cattle and their peripheral lymph nodes. Vet Microbiol. 2018 Jul; 220:97-106. Porwollik S, Genovese K, Chu W, Loneragan GH, Edrington T, McClelland M. PMID: 29885808.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    36. Genes affecting progression of bacteriophage P22 infection in Salmonella identified by transposon and single gene deletion screens. Mol Microbiol. 2018 05; 108(3):288-305. Bohm K, Porwollik S, Chu W, Dover JA, Gilcrease EB, Casjens SR, McClelland M, Parent KN. PMID: 29470858; PMCID: PMC5912970.
      View in: PubMed   Mentions: 15     Fields:    Translation:Cells
    37. Interactions of Salmonella enterica Serovar Typhimurium and Pectobacterium carotovorum within a Tomato Soft Rot. Appl Environ Microbiol. 2018 03 01; 84(5). George AS, Cox CE, Desai P, Porwollik S, Chu W, de Moraes MH, McClelland M, Brandl MT, Teplitski M. PMID: 29247060; PMCID: PMC5812938.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    38. De novo pyrimidine synthesis is necessary for intestinal colonization of Salmonella Typhimurium in chicks. PLoS One. 2017; 12(10):e0183751. Yang HJ, Bogomolnaya L, McClelland M, Andrews-Polymenis H. PMID: 29040285; PMCID: PMC5644981.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    39. Gene Expression Response of Salmonella enterica Serotype Enteritidis Phage Type 8 to Subinhibitory Concentrations of the Plant-Derived Compounds Trans-Cinnamaldehyde and Eugenol. Front Microbiol. 2017; 8:1828. Kollanoor Johny A, Frye JG, Donoghue A, Donoghue DJ, Porwollik S, McClelland M, Venkitanarayanan K. PMID: 29018419; PMCID: PMC5623010.
      View in: PubMed   Mentions: 13  
    40. Draft Genome Sequences of 64 Salmonella enterica Serotype Enteritidis Isolates Obtained from Wild Mice. Genome Announc. 2017 Sep 07; 5(36). Guard J, Cao G, Kastanis GJ, Davison S, McClelland M, Sanchez Leon M, Zheng J, Brown E, Allard MW. PMID: 28883147; PMCID: PMC5589541.
      View in: PubMed   Mentions: 2  
    41. A simplified multiplex PCR-based typing method for common Salmonella enterica serovars supported by online server-based detection system. Indian J Med Res. 2017 Aug; 146(2):272-280. Borah P, Porwollik S, Desai P, Nayak P, Borah PP, Cheng P, McClelland M. PMID: 29265030; PMCID: PMC5761039.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    42. Novel DNA Binding and Regulatory Activities for σ54 (RpoN) in Salmonella enterica Serovar Typhimurium 14028s. J Bacteriol. 2017 06 15; 199(12). Bono AC, Hartman CE, Solaimanpour S, Tong H, Porwollik S, McClelland M, Frye JG, Mrázek J, Karls AC. PMID: 28373272; PMCID: PMC5446619.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    43. Erratum: Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings. Nat Genet. 2017 03 30; 49(4):651. Feasey NA, Hadfield J, Keddy KH, Dallman TJ, Jacobs J, Deng X, Wigley P, Barquist L, Langridge GC, Feltwell T, Harris SR, Mather AE, Fookes M, Aslett M, Msefula C, Kariuki S, Maclennan CA, Onsare RS, Weill FX, Le Hello S, Smith AM, McClelland M, Desai P, Parry CM, Cheesbrough J, French N, Campos J, Chabalgoity JA, Betancor L, Hopkins KL, Nair S, Humphrey TJ, Lunguya O, Cogan TA, Tapia MD, Sow SO, Tennant SM, Bornstein K, Levine MM, Lacharme-Lora L, Everett DB, Kingsley RA, Parkhill J, Heyderman RS, Dougan G, Gordon MA, Thomson NR. PMID: 28358127.
      View in: PubMed   Mentions:    Fields:    
    44. Salmonella Persistence in Tomatoes Requires a Distinct Set of Metabolic Functions Identified by Transposon Insertion Sequencing. Appl Environ Microbiol. 2017 03 01; 83(5). de Moraes MH, Desai P, Porwollik S, Canals R, Perez DR, Chu W, McClelland M, Teplitski M. PMID: 28039131; PMCID: PMC5311394.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansAnimalsCells
    45. Contribution of Asparagine Catabolism to Salmonella Virulence. Infect Immun. 2017 02; 85(2). McLaughlin PA, McClelland M, Yang HJ, Porwollik S, Bogomolnaya L, Chen JS, Andrews-Polymenis H, van der Velden AWM. PMID: 27849183; PMCID: PMC5278173.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    46. Draft Genome Sequence of Salmonella enterica subsp. diarizonae Serovar 61:k:1,5,(7) Strain CRJJGF_00165 (Phylum Gammaproteobacteria). Genome Announc. 2016 Nov 23; 4(6). Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Barrett JB, Frye JG. PMID: 27881547; PMCID: PMC5122689.
      View in: PubMed   Mentions: 1  
    47. Genetic Determinants of Salmonella enterica Serovar Typhimurium Proliferation in the Cytosol of Epithelial Cells. Infect Immun. 2016 Dec; 84(12):3517-3526. Wrande M, Andrews-Polymenis H, Twedt DJ, Steele-Mortimer O, Porwollik S, McClelland M, Knodler LA. PMID: 27698022; PMCID: PMC5116728.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    48. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Orion Strain CRJJGF_00093 (Phylum Gammaproteobacteria). Genome Announc. 2016 Sep 29; 4(5). Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Frye JG. PMID: 27688320; PMCID: PMC5043568.
      View in: PubMed   Mentions: 1  
    49. Genetic and Phenotypic Characterization of a Salmonella enterica serovar Enteritidis Emerging Strain with Superior Intra-macrophage Replication Phenotype. Front Microbiol. 2016; 7:1468. Shomer I, Avisar A, Desai P, Azriel S, Smollan G, Belausov N, Keller N, Glikman D, Maor Y, Peretz A, McClelland M, Rahav G, Gal-Mor O. PMID: 27695450; PMCID: PMC5025531.
      View in: PubMed   Mentions:
    50. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Bardo Strain CRJJGF_00099 (Phylum Gammaproteobacteria). Genome Announc. 2016 Sep 15; 4(5). Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Frye JG. PMID: 27634995; PMCID: PMC5026435.
      View in: PubMed   Mentions: 2  
    51. Involvement of the Rcs regulon in the persistence of Salmonella Typhimurium in tomatoes. Environ Microbiol Rep. 2016 Oct; 8(5):928-935. Marvasi M, de Moraes MH, Salas-Gonzalez I, Porwollik S, Farias M, McClelland M, Teplitski M. PMID: 27558204.
      View in: PubMed   Mentions: 3     Fields:    
    52. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Blockley Strain CRJJGF_00147 (Phylum Gammaproteobacteria). Genome Announc. 2016 Sep 08; 4(5). Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Frye JG. PMID: 27609923; PMCID: PMC5017228.
      View in: PubMed   Mentions: 1  
    53. Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings. Nat Genet. 2016 10; 48(10):1211-1217. Feasey NA, Hadfield J, Keddy KH, Dallman TJ, Jacobs J, Deng X, Wigley P, Barquist L, Langridge GC, Feltwell T, Harris SR, Mather AE, Fookes M, Aslett M, Msefula C, Kariuki S, Maclennan CA, Onsare RS, Weill FX, Le Hello S, Smith AM, McClelland M, Desai P, Parry CM, Cheesbrough J, French N, Campos J, Chabalgoity JA, Betancor L, Hopkins KL, Nair S, Humphrey TJ, Lunguya O, Cogan TA, Tapia MD, Sow SO, Tennant SM, Bornstein K, Levine MM, Lacharme-Lora L, Everett DB, Kingsley RA, Parkhill J, Heyderman RS, Dougan G, Gordon MA, Thomson NR. PMID: 27548315; PMCID: PMC5047355.
      View in: PubMed   Mentions: 115     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    54. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Lille Strain CRJJGF_000101 (Phylum Gammaproteobacteria). Genome Announc. 2016 Jul 14; 4(4). Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Frye JG. PMID: 27417829; PMCID: PMC4945789.
      View in: PubMed   Mentions: 1  
    55. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Widemarsh Strain CRJJGF_00058 (Phylum Gammaproteobacteria). Genome Announc. 2016 Jul 14; 4(4). Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Frye JG. PMID: 27417830; PMCID: PMC4945790.
      View in: PubMed   Mentions: 1  
    56. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Kiambu Strain CRJJGF_00061 (Phylum Gammaproteobacteria). Genome Announc. 2016 Jul 07; 4(4). Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Frye JG. PMID: 27389263; PMCID: PMC4939780.
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    57. Solid tumors provide niche-specific conditions that lead to preferential growth of Salmonella. Oncotarget. 2016 Jun 07; 7(23):35169-80. Silva-Valenzuela CA, Desai PT, Molina-Quiroz RC, Pezoa D, Zhang Y, Porwollik S, Zhao M, Hoffman RM, Contreras I, Santiviago CA, McClelland M. PMID: 27145267; PMCID: PMC5085218.
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    58. DksA-Dependent Transcriptional Regulation in Salmonella Experiencing Nitrosative Stress. Front Microbiol. 2016; 7:444. Crawford MA, Henard CA, Tapscott T, Porwollik S, McClelland M, Vázquez-Torres A. PMID: 27065993; PMCID: PMC4815678.
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    59. Differences in Host Cell Invasion and Salmonella Pathogenicity Island 1 Expression between Salmonella enterica Serovar Paratyphi A and Nontyphoidal S. Typhimurium. Infect Immun. 2016 Apr; 84(4):1150-1165. Elhadad D, Desai P, Grassl GA, McClelland M, Rahav G, Gal-Mor O. PMID: 26857569; PMCID: PMC4807488.
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    60. Novel Two-Step Hierarchical Screening of Mutant Pools Reveals Mutants under Selection in Chicks. Infect Immun. 2016 Apr; 84(4):1226-1238. Yang HJ, Bogomolnaya LM, Elfenbein JR, Endicott-Yazdani T, Reynolds MM, Porwollik S, Cheng P, Xia XQ, McClelland M, Andrews-Polymenis H. PMID: 26857572; PMCID: PMC4807481.
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    61. Reply to Yue. Clin Infect Dis. 2016 05 15; 62(10):1326-7. McClelland M, Marzel A, Desai PT, Gal-Mor O. PMID: 26980876.
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    62. High Sensitivity of an Ha-RAS Transgenic Model of Superficial Bladder Cancer to Metformin Is Associated with ∼240-Fold Higher Drug Concentration in Urine than Serum. Mol Cancer Ther. 2016 Mar; 15(3):430-8. Liu Z, Yokoyama NN, Blair CA, Li X, Avizonis D, Wu XR, Uchio E, Youssef R, McClelland M, Pollak M, Zi X. PMID: 26921394; PMCID: PMC4783238.
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    63. Analysis of Two Complementary Single-Gene Deletion Mutant Libraries of Salmonella Typhimurium in Intraperitoneal Infection of BALB/c Mice. Front Microbiol. 2015; 6:1455. Silva-Valenzuela CA, Molina-Quiroz RC, Desai P, Valenzuela C, Porwollik S, Zhao M, Hoffman RM, Andrews-Polymenis H, Contreras I, Santiviago CA, McClelland M. PMID: 26779130; PMCID: PMC4700939.
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    64. Persistent Infections by Nontyphoidal Salmonella in Humans: Epidemiology and Genetics. Clin Infect Dis. 2016 Apr 01; 62(7):879-886. Marzel A, Desai PT, Goren A, Schorr YI, Nissan I, Porwollik S, Valinsky L, McClelland M, Rahav G, Gal-Mor O. PMID: 26740515; PMCID: PMC4787607.
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    65. Influence of Salmonella enterica Serovar Typhimurium ssrB on Colonization of Eastern Oysters (Crassostrea virginica) as Revealed by a Promoter Probe Screen. Appl Environ Microbiol. 2016 01 01; 82(1):328-39. Cox CE, Wright AC, McClelland M, Teplitski M. PMID: 26497459; PMCID: PMC4702611.
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    66. Multicopy Single-Stranded DNA Directs Intestinal Colonization of Enteric Pathogens. PLoS Genet. 2015 Sep; 11(9):e1005472. Elfenbein JR, Knodler LA, Nakayasu ES, Ansong C, Brewer HM, Bogomolnaya L, Adams LG, McClelland M, Adkins JN, Andrews-Polymenis HL. PMID: 26367458; PMCID: PMC4569332.
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    67. Six stroma-based RNA markers diagnostic for prostate cancer in European-Americans validated at the RNA and protein levels in patients in China. Oncotarget. 2015 Jun 30; 6(18):16757-65. Zhu J, Pan C, Jiang J, Deng M, Gao H, Men B, McClelland M, Mercola D, Zhong WD, Jia Z. PMID: 26158290; PMCID: PMC4599305.
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    68. Flagellin Is Required for Host Cell Invasion and Normal Salmonella Pathogenicity Island 1 Expression by Salmonella enterica Serovar Paratyphi A. Infect Immun. 2015 Sep; 83(9):3355-68. Elhadad D, Desai P, Rahav G, McClelland M, Gal-Mor O. PMID: 26056383; PMCID: PMC4534655.
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    69. The identification of trans-associations between prostate cancer GWAS SNPs and RNA expression differences in tumor-adjacent stroma. Oncotarget. 2015 Jan 30; 6(3):1865-73. Chen X, McClelland M, Jia Z, Rahmatpanah FB, Sawyers A, Trent J, Duggan D, Mercola D. PMID: 25638161; PMCID: PMC4359337.
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    70. A class of genes in the HER2 regulon that is poised for transcription in breast cancer cell lines and expressed in human breast tumors. Oncotarget. 2015 Jan 20; 6(2):1286-301. Rahmatpanah FB, Jia Z, Chen X, Char JE, Men B, Franke AC, Jones FE, McClelland M, Mercola D. PMID: 25428913; PMCID: PMC4359233.
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    71. RNA-Rocket: an RNA-Seq analysis resource for infectious disease research. Bioinformatics. 2015 May 01; 31(9):1496-8. Warren AS, Aurrecoechea C, Brunk B, Desai P, Emrich S, Giraldo-Calderón GI, Harb O, Hix D, Lawson D, Machi D, Mao C, McClelland M, Nordberg E, Shukla M, Vosshall LB, Wattam AR, Will R, Yoo HS, Sobral B. PMID: 25573919; PMCID: PMC4410666.
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    72. Feverlike Temperature is a Virulence Regulatory Cue Controlling the Motility and Host Cell Entry of Typhoidal Salmonella. J Infect Dis. 2015 Jul 01; 212(1):147-56. Elhadad D, McClelland M, Rahav G, Gal-Mor O. PMID: 25492917; PMCID: PMC4542590.
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    73. Identification of novel factors involved in modulating motility of Salmonella enterica serotype typhimurium. PLoS One. 2014; 9(11):e111513. Bogomolnaya LM, Aldrich L, Ragoza Y, Talamantes M, Andrews KD, McClelland M, Andrews-Polymenis HL. PMID: 25369209; PMCID: PMC4219756.
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    74. rpoS-Regulated core genes involved in the competitive fitness of Salmonella enterica Serovar Kentucky in the intestines of chickens. Appl Environ Microbiol. 2015 Jan; 81(2):502-14. Cheng Y, Pedroso AA, Porwollik S, McClelland M, Lee MD, Kwan T, Zamperini K, Soni V, Sellers HS, Russell SM, Maurer JJ. PMID: 25362062; PMCID: PMC4277580.
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    75. Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages. Emerg Infect Dis. 2014 Sep; 20(9):1481-9. Deng X, Desai PT, den Bakker HC, Mikoleit M, Tolar B, Trees E, Hendriksen RS, Frye JG, Porwollik S, Weimer BC, Wiedmann M, Weinstock GM, Fields PI, McClelland M. PMID: 25147968; PMCID: PMC4178404.
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    76. High-throughput assay to phenotype Salmonella enterica Typhimurium association, invasion, and replication in macrophages. J Vis Exp. 2014 Aug 11; (90):e51759. Wu J, Pugh R, Laughlin RC, Andrews-Polymenis H, McClelland M, Bäumler AJ, Adams LG. PMID: 25146526; PMCID: PMC4500590.
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    77. Defined single-gene and multi-gene deletion mutant collections in Salmonella enterica sv Typhimurium. PLoS One. 2014; 9(7):e99820. Porwollik S, Santiviago CA, Cheng P, Long F, Desai P, Fredlund J, Srikumar S, Silva CA, Chu W, Chen X, Canals R, Reynolds MM, Bogomolnaya L, Shields C, Cui P, Guo J, Zheng Y, Endicott-Yazdani T, Yang HJ, Maple A, Ragoza Y, Blondel CJ, Valenzuela C, Andrews-Polymenis H, McClelland M. PMID: 25007190; PMCID: PMC4089911.
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    78. Role of the adjacent stroma cells in prostate cancer development and progression: synergy between TGF-β and IGF signaling. Biomed Res Int. 2014; 2014:502093. Lee C, Jia Z, Rahmatpanah F, Zhang Q, Zi X, McClelland M, Mercola D. PMID: 25089270; PMCID: PMC4095744.
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    79. The small RNA RyhB homologs from Salmonella typhimurium participate in the response to S-nitrosoglutathione-induced stress. Biochem Biophys Res Commun. 2014 Jul 18; 450(1):641-5. Calderón PF, Morales EH, Acuña LG, Fuentes DN, Gil F, Porwollik S, McClelland M, Saavedra CP, Calderón IL. PMID: 24937451.
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    80. Identification of a Salmonella ancillary copper detoxification mechanism by a comparative analysis of the genome-wide transcriptional response to copper and zinc excess. Microbiology (Reading). 2014 Aug; 160(Pt 8):1659-1669. Pontel LB, Scampoli NL, Porwollik S, Checa SK, McClelland M, Soncini FC. PMID: 24858080; PMCID: PMC4117220.
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    81. Integrative analysis of Salmonellosis in Israel reveals association of Salmonella enterica Serovar 9,12:l,v:- with extraintestinal infections, dissemination of endemic S. enterica Serovar Typhimurium DT104 biotypes, and severe underreporting of outbreaks. J Clin Microbiol. 2014 Jun; 52(6):2078-88. Marzel A, Desai PT, Nissan I, Schorr YI, Suez J, Valinsky L, Reisfeld A, Agmon V, Guard J, McClelland M, Rahav G, Gal-Mor O. PMID: 24719441; PMCID: PMC4042803.
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    82. Whole-Genome Sequencing of Salmonella enterica subsp. enterica Serovar Cubana Strains Isolated from Agricultural Sources. Genome Announc. 2014 Jan 23; 2(1). Benahmed FH, Gopinath GR, Wang H, Jean-Gilles Beaubrun J, Grim C, Cheng CM, McClelland M, Ayers S, Abbott J, Desai P, Frye JG, Weinstock G, Hammack TS, Hanes DE, Rasmussen MA, Davidson MK. PMID: 24459266; PMCID: PMC3900898.
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    83. Generation of "virtual" control groups for single arm prostate cancer adjuvant trials. PLoS One. 2014; 9(1):e85010. Jia Z, Lilly MB, Koziol JA, Chen X, Xia XQ, Wang Y, Skarecky D, Sutton M, Sawyers A, Ruckle H, Carpenter PM, Wang-Rodriguez J, Jiang J, Deng M, Pan C, Zhu JG, McLaren CE, Gurley MJ, Lee C, McClelland M, Ahlering T, Kattan MW, Mercola D. PMID: 24465467; PMCID: PMC3897405.
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    84. The 4-cysteine zinc-finger motif of the RNA polymerase regulator DksA serves as a thiol switch for sensing oxidative and nitrosative stress. Mol Microbiol. 2014 Feb; 91(4):790-804. Henard CA, Tapscott T, Crawford MA, Husain M, Doulias PT, Porwollik S, Liu L, McClelland M, Ischiropoulos H, Vázquez-Torres A. PMID: 24354846; PMCID: PMC4053250.
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    85. Probing the ArcA regulon under aerobic/ROS conditions in Salmonella enterica serovar Typhimurium. BMC Genomics. 2013 Sep 17; 14:626. Morales EH, Collao B, Desai PT, Calderón IL, Gil F, Luraschi R, Porwollik S, McClelland M, Saavedra CP. PMID: 24044554; PMCID: PMC3848847.
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    86. Novel determinants of intestinal colonization of Salmonella enterica serotype typhimurium identified in bovine enteric infection. Infect Immun. 2013 Nov; 81(11):4311-20. Elfenbein JR, Endicott-Yazdani T, Porwollik S, Bogomolnaya LM, Cheng P, Guo J, Zheng Y, Yang HJ, Talamantes M, Shields C, Maple A, Ragoza Y, DeAtley K, Tatsch T, Cui P, Andrews KD, McClelland M, Lawhon SD, Andrews-Polymenis H. PMID: 24019407; PMCID: PMC3811824.
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    87. Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the σ⁵⁴ (RpoN) regulon of Salmonella Typhimurium LT2. BMC Genomics. 2013 Sep 05; 14:602. Samuels DJ, Frye JG, Porwollik S, McClelland M, Mrázek J, Hoover TR, Karls AC. PMID: 24007446; PMCID: PMC3844500.
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    88. The EAL domain containing protein STM2215 (rtn) is needed during Salmonella infection and has cyclic di-GMP phosphodiesterase activity. Mol Microbiol. 2013 Aug; 89(3):403-19. Zheng Y, Sambou T, Bogomolnaya LM, Cirillo JD, McClelland M, Andrews-Polymenis H. PMID: 23734719.
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    89. Natural products and transforming growth factor-beta (TGF-β) signaling in cancer development and progression. Curr Cancer Drug Targets. 2013 Jun; 13(5):500-5. Lee C, Zhang Q, Kozlowski J, Brendler C, B Soares M, Dash A, McClelland M, Mercola D. PMID: 23597196.
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    90. Mapping and regulation of genes within Salmonella pathogenicity island 12 that contribute to in vivo fitness of Salmonella enterica Serovar Typhimurium. Infect Immun. 2013 Jul; 81(7):2394-404. Tomljenovic-Berube AM, Henriksbo B, Porwollik S, Cooper CA, Tuinema BR, McClelland M, Coombes BK. PMID: 23630960; PMCID: PMC3697593.
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    91. Virulence gene profiling and pathogenicity characterization of non-typhoidal Salmonella accounted for invasive disease in humans. PLoS One. 2013; 8(3):e58449. Suez J, Porwollik S, Dagan A, Marzel A, Schorr YI, Desai PT, Agmon V, McClelland M, Rahav G, Gal-Mor O. PMID: 23505508; PMCID: PMC3591323.
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    92. A single step multiplex PCR for identification of six diarrheagenic E. coli pathotypes and Salmonella. Int J Med Microbiol. 2013 May; 303(4):210-6. Chandra M, Cheng P, Rondeau G, Porwollik S, McClelland M. PMID: 23562277.
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    93. Evolutionary Genomics of Salmonella enterica Subspecies. mBio. 2013 Mar 05; 4(2). Desai PT, Porwollik S, Long F, Cheng P, Wollam A, Bhonagiri-Palsikar V, Hallsworth-Pepin K, Clifton SW, Weinstock GM, McClelland M. PMID: 23462113; PMCID: PMC3604774.
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    94. A sample selection strategy to boost the statistical power of signature detection in cancer expression profile studies. Anticancer Agents Med Chem. 2013 Feb; 13(2):203-11. Jia Z, Wang Y, Hu Y, McLaren C, Yu Y, Ye K, Xia XQ, Koziol JA, Lernhardt W, McClelland M, Mercola D. PMID: 22934703; PMCID: PMC3786411.
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    95. The intestinal fatty acid propionate inhibits Salmonella invasion through the post-translational control of HilD. Mol Microbiol. 2013 Mar; 87(5):1045-60. Hung CC, Garner CD, Slauch JM, Dwyer ZW, Lawhon SD, Frye JG, McClelland M, Ahmer BM, Altier C. PMID: 23289537; PMCID: PMC3581741.
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    96. Characterization of an acid-inducible sulfatase in Salmonella enterica serovar typhimurium. Appl Environ Microbiol. 2013 Mar; 79(6):2092-5. Das S, Singh S, McClelland M, Forst S, Gyaneshwar P. PMID: 23315743; PMCID: PMC3592217.
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    97. L-asparaginase II produced by Salmonella typhimurium inhibits T cell responses and mediates virulence. Cell Host Microbe. 2012 Dec 13; 12(6):791-8. Kullas AL, McClelland M, Yang HJ, Tam JW, Torres A, Porwollik S, Mena P, McPhee JB, Bogomolnaya L, Andrews-Polymenis H, van der Velden AW. PMID: 23245323; PMCID: PMC4361029.
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    98. Comparative analysis of genome sequences covering the seven cronobacter species. PLoS One. 2012; 7(11):e49455. Joseph S, Desai P, Ji Y, Cummings CA, Shih R, Degoricija L, Rico A, Brzoska P, Hamby SE, Masood N, Hariri S, Sonbol H, Chuzhanova N, McClelland M, Furtado MR, Forsythe SJ. PMID: 23166675; PMCID: PMC3500316.
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    99. An accurate prostate cancer prognosticator using a seven-gene signature plus Gleason score and taking cell type heterogeneity into account. PLoS One. 2012; 7(9):e45178. Chen X, Xu S, McClelland M, Rahmatpanah F, Sawyers A, Jia Z, Mercola D. PMID: 23028830; PMCID: PMC3460942.
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    100. Live attenuated S. Typhimurium vaccine with improved safety in immuno-compromised mice. PLoS One. 2012; 7(9):e45433. Periaswamy B, Maier L, Vishwakarma V, Slack E, Kremer M, Andrews-Polymenis HL, McClelland M, Grant AJ, Suar M, Hardt WD. PMID: 23029007; PMCID: PMC3454430.
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    101. Global transcriptional analysis of dehydrated Salmonella enterica serovar Typhimurium. Appl Environ Microbiol. 2012 Nov; 78(22):7866-75. Gruzdev N, McClelland M, Porwollik S, Ofaim S, Pinto R, Saldinger-Sela S. PMID: 22941081; PMCID: PMC3485933.
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    102. Expression changes in the stroma of prostate cancer predict subsequent relapse. PLoS One. 2012; 7(8):e41371. Jia Z, Rahmatpanah FB, Chen X, Lernhardt W, Wang Y, Xia XQ, Sawyers A, Sutton M, McClelland M, Mercola D. PMID: 22870216; PMCID: PMC3411675.
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    103. The NsrR regulon in nitrosative stress resistance of Salmonella enterica serovar Typhimurium. Mol Microbiol. 2012 Sep; 85(6):1179-93. Karlinsey JE, Bang IS, Becker LA, Frawley ER, Porwollik S, Robbins HF, Thomas VC, Urbano R, McClelland M, Fang FC. PMID: 22831173; PMCID: PMC3438343.
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    104. TGF-β mediated DNA methylation in prostate cancer. Transl Androl Urol. 2012 Jun; 1(2):78-88. Lee C, Zhang Q, Zi X, Dash A, Soares MB, Rahmatpanah F, Jia Z, McClelland M, Mercola D. PMID: 25133096; PMCID: PMC4131550.
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    105. High-throughput comparison of gene fitness among related bacteria. BMC Genomics. 2012 May 30; 13:212. Canals R, Xia XQ, Fronick C, Clifton SW, Ahmer BM, Andrews-Polymenis HL, Porwollik S, McClelland M. PMID: 22646920; PMCID: PMC3487940.
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    106. Hypochlorous acid and hydrogen peroxide-induced negative regulation of Salmonella enterica serovar Typhimurium ompW by the response regulator ArcA. BMC Microbiol. 2012 May 22; 12:63. Morales EH, Calderón IL, Collao B, Gil F, Porwollik S, McClelland M, Saavedra CP. PMID: 22545862; PMCID: PMC3358236.
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    107. Selection of Salmonella enterica serovar Typhi genes involved during interaction with human macrophages by screening of a transposon mutant library. PLoS One. 2012; 7(5):e36643. Sabbagh SC, Lepage C, McClelland M, Daigle F. PMID: 22574205; PMCID: PMC3344905.
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    108. Virulence of 32 Salmonella strains in mice. PLoS One. 2012; 7(4):e36043. Swearingen MC, Porwollik S, Desai PT, McClelland M, Ahmer BM. PMID: 22558320; PMCID: PMC3338620.
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    109. Requirement of siderophore biosynthesis for plant colonization by Salmonella enterica. Appl Environ Microbiol. 2012 Jul; 78(13):4561-70. Hao LY, Willis DK, Andrews-Polymenis H, McClelland M, Barak JD. PMID: 22522683; PMCID: PMC3370490.
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    110. Gene expression analysis of Salmonella enterica Enteritidis Nal(R) and Salmonella enterica Kentucky 3795 exposed to HCl and acetic acid in rich medium. Foodborne Pathog Dis. 2012 Apr; 9(4):331-7. Joerger RD, Sartori C, Frye JG, Turpin JB, Schmidt C, McClelland M, Porwollik S. PMID: 22356573; PMCID: PMC3353815.
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    111. Expression of HER2 in Breast Cancer Promotes a Massive Reorganization of Gene Activity and Suggests a Role for Epigenetic Regulation. J Data Mining Genomics Proteomics. 2012; 3. Rahmatpanah F, Jia Z, Chen X, Jones FE, McClelland M, Mercola D. PMID: 24009986; PMCID: PMC3760961.
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    112. Genome-wide analysis of histone H3 acetylation patterns in AML identifies PRDX2 as an epigenetically silenced tumor suppressor gene. Blood. 2012 Mar 08; 119(10):2346-57. Agrawal-Singh S, Isken F, Agelopoulos K, Klein HU, Thoennissen NH, Koehler G, Hascher A, Bäumer N, Berdel WE, Thiede C, Ehninger G, Becker A, Schlenke P, Wang Y, McClelland M, Krug U, Koschmieder S, Büchner T, Yu DY, Singh SV, Hansen K, Serve H, Dugas M, Müller-Tidow C. PMID: 22207736.
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    113. Molecular and cellular characterization of a Salmonella enterica serovar Paratyphi a outbreak strain and the human immune response to infection. Clin Vaccine Immunol. 2012 Feb; 19(2):146-56. Gal-Mor O, Suez J, Elhadad D, Porwollik S, Leshem E, Valinsky L, McClelland M, Schwartz E, Rahav G. PMID: 22190395; PMCID: PMC3272918.
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    114. In vivo expression of Salmonella enterica serotype Typhi genes in the blood of patients with typhoid fever in Bangladesh. PLoS Negl Trop Dis. 2011 Dec; 5(12):e1419. Sheikh A, Charles RC, Sharmeen N, Rollins SM, Harris JB, Bhuiyan MS, Arifuzzaman M, Khanam F, Bukka A, Kalsy A, Porwollik S, Leung DT, Brooks WA, LaRocque RC, Hohmann EL, Cravioto A, Logvinenko T, Calderwood SB, McClelland M, Graham JE, Qadri F, Ryan ET. PMID: 22180799; PMCID: PMC3236720.
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    115. Infection of mice by Salmonella enterica serovar Enteritidis involves additional genes that are absent in the genome of serovar Typhimurium. Infect Immun. 2012 Feb; 80(2):839-49. Silva CA, Blondel CJ, Quezada CP, Porwollik S, Andrews-Polymenis HL, Toro CS, Zaldívar M, Contreras I, McClelland M, Santiviago CA. PMID: 22083712; PMCID: PMC3264302.
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    116. The Fur regulon in anaerobically grown Salmonella enterica sv. Typhimurium: identification of new Fur targets. BMC Microbiol. 2011 Oct 21; 11:236. Troxell B, Fink RC, Porwollik S, McClelland M, Hassan HM. PMID: 22017966; PMCID: PMC3212961.
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    117. The accuracy of survival time prediction for patients with glioma is improved by measuring mitotic spindle checkpoint gene expression. PLoS One. 2011; 6(10):e25631. Bie L, Zhao G, Cheng P, Rondeau G, Porwollik S, Ju Y, Xia XQ, McClelland M. PMID: 22022424; PMCID: PMC3192043.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansCells
    118. Salmonella exploits Arl8B-directed kinesin activity to promote endosome tubulation and cell-to-cell transfer. Cell Microbiol. 2011 Nov; 13(11):1812-23. Kaniuk NA, Canadien V, Bagshaw RD, Bakowski M, Braun V, Landekic M, Mitra S, Huang J, Heo WD, Meyer T, Pelletier L, Andrews-Polymenis H, McClelland M, Pawson T, Grinstein S, Brumell JH. PMID: 21824248.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansAnimalsCells
    119. Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium. BMC Genomics. 2011 Aug 25; 12:433. Ansong C, Tolic N, Purvine SO, Porwollik S, Jones M, Yoon H, Payne SH, Martin JL, Burnet MC, Monroe ME, Venepally P, Smith RD, Peterson SN, Heffron F, McClelland M, Adkins JN. PMID: 21867535; PMCID: PMC3174948.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    120. Hydrogen-stimulated carbon acquisition and conservation in Salmonella enterica serovar Typhimurium. J Bacteriol. 2011 Oct; 193(20):5824-32. Lamichhane-Khadka R, Frye JG, Porwollik S, McClelland M, Maier RJ. PMID: 21856852; PMCID: PMC3187206.
      View in: PubMed   Mentions: 11     Fields:    Translation:Cells
    121. Diagnosis of prostate cancer using differentially expressed genes in stroma. Cancer Res. 2011 Apr 01; 71(7):2476-87. Jia Z, Wang Y, Sawyers A, Yao H, Rahmatpanah F, Xia XQ, Xu Q, Pio R, Turan T, Koziol JA, Goodison S, Carpenter P, Wang-Rodriguez J, Simoneau A, Meyskens F, Sutton M, Lernhardt W, Beach T, Monforte J, McClelland M, Mercola D. PMID: 21459804; PMCID: PMC3071046.
      View in: PubMed   Mentions: 57     Fields:    Translation:HumansCells
    122. Analysis of the ArcA regulon in anaerobically grown Salmonella enterica sv. Typhimurium. BMC Microbiol. 2011 Mar 21; 11:58. Evans MR, Fink RC, Vazquez-Torres A, Porwollik S, Jones-Carson J, McClelland M, Hassan HM. PMID: 21418628; PMCID: PMC3075218.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    123. Abrogation of the twin arginine transport system in Salmonella enterica serovar Typhimurium leads to colonization defects during infection. PLoS One. 2011 Jan 26; 6(1):e15800. Reynolds MM, Bogomolnaya L, Guo J, Aldrich L, Bokhari D, Santiviago CA, McClelland M, Andrews-Polymenis H. PMID: 21298091; PMCID: PMC3027627.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    124. Increased HDAC1 deposition at hematopoietic promoters in AML and its association with patient survival. Leuk Res. 2011 May; 35(5):620-5. Tickenbrock L, Klein HU, Trento C, Hascher A, Göllner S, Bäumer N, Kuss R, Agrawal S, Bug G, Serve H, Thiede C, Ehninger G, Stadt UZ, McClelland M, Wang Y, Becker A, Koschmieder S, Berdel WE, Dugas M, Müller-Tidow C, Study Alliance Leukemia Group. PMID: 21176959.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    125. The CpxR/CpxA two-component system up-regulates two Tat-dependent peptidoglycan amidases to confer bacterial resistance to antimicrobial peptide. J Biol Chem. 2011 Feb 18; 286(7):5529-39. Weatherspoon-Griffin N, Zhao G, Kong W, Kong Y, Andrews-Polymenis H, McClelland M, Shi Y. PMID: 21149452; PMCID: PMC3037666.
      View in: PubMed   Mentions: 51     Fields:    Translation:Cells
    126. Analysis of Salmonella enterica serotype paratyphi A gene expression in the blood of bacteremic patients in Bangladesh. PLoS Negl Trop Dis. 2010 Dec 07; 4(12):e908. Sheikh A, Charles RC, Rollins SM, Harris JB, Bhuiyan MS, Khanam F, Bukka A, Kalsy A, Porwollik S, Brooks WA, LaRocque RC, Hohmann EL, Cravioto A, Logvinenko T, Calderwood SB, McClelland M, Graham JE, Qadri F, Ryan ET. PMID: 21151879; PMCID: PMC2998432.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansCells
    127. Stem cell-like micro-RNA signature driven by Myc in aggressive liver cancer. Proc Natl Acad Sci U S A. 2010 Nov 23; 107(47):20471-6. Cairo S, Wang Y, de Reyniès A, Duroure K, Dahan J, Redon MJ, Fabre M, McClelland M, Wang XW, Croce CM, Buendia MA. PMID: 21059911; PMCID: PMC2996672.
      View in: PubMed   Mentions: 93     Fields:    Translation:HumansCells
    128. Specific responses of Salmonella enterica to tomato varieties and fruit ripeness identified by in vivo expression technology. PLoS One. 2010 Aug 31; 5(8):e12406. Noel JT, Arrach N, Alagely A, McClelland M, Teplitski M. PMID: 20824208; PMCID: PMC2930847.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCellsPHPublic Health
    129. Humanized nonobese diabetic-scid IL2rgammanull mice are susceptible to lethal Salmonella Typhi infection. Proc Natl Acad Sci U S A. 2010 Aug 31; 107(35):15589-94. Libby SJ, Brehm MA, Greiner DL, Shultz LD, McClelland M, Smith KD, Cookson BT, Karlinsey JE, Kinkel TL, Porwollik S, Canals R, Cummings LA, Fang FC. PMID: 20713716; PMCID: PMC2932584.
      View in: PubMed   Mentions: 67     Fields:    Translation:HumansAnimalsCells
    130. In silico estimates of tissue components in surgical samples based on expression profiling data. Cancer Res. 2010 Aug 15; 70(16):6448-55. Wang Y, Xia XQ, Jia Z, Sawyers A, Yao H, Wang-Rodriquez J, Mercola D, McClelland M. PMID: 20663908; PMCID: PMC4411177.
      View in: PubMed   Mentions: 50     Fields:    Translation:HumansCells
    131. The AI-2-dependent regulator LsrR has a limited regulon in Salmonella Typhimurium. Cell Res. 2010 Aug; 20(8):966-9. Thijs IM, Zhao H, De Weerdt A, Engelen K, De Coster D, Schoofs G, McClelland M, Vanderleyden J, Marchal K, De Keersmaecker SC. PMID: 20628367.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    132. TabSQL: a MySQL tool to facilitate mapping user data to public databases. BMC Bioinformatics. 2010 Jun 23; 11:342. Xia XQ, McClelland M, Wang Y. PMID: 20573251; PMCID: PMC2909216.
      View in: PubMed   Mentions: 1     Fields:    
    133. Profiling of histone H3 lysine 9 trimethylation levels predicts transcription factor activity and survival in acute myeloid leukemia. Blood. 2010 Nov 04; 116(18):3564-71. Müller-Tidow C, Klein HU, Hascher A, Isken F, Tickenbrock L, Thoennissen N, Agrawal-Singh S, Tschanter P, Disselhoff C, Wang Y, Becker A, Thiede C, Ehninger G, zur Stadt U, Koschmieder S, Seidl M, Müller FU, Schmitz W, Schlenke P, McClelland M, Berdel WE, Dugas M, Serve H, Study Alliance Leukemia. PMID: 20498303; PMCID: PMC2981478.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansCells
    134. Evaluating oligonucleotide properties for DNA microarray probe design. Nucleic Acids Res. 2010 Jun; 38(11):e121. Xia XQ, Jia Z, Porwollik S, Long F, Hoemme C, Ye K, Müller-Tidow C, McClelland M, Wang Y. PMID: 20236987; PMCID: PMC2887943.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    135. High-throughput screening for salmonella avirulent mutants that retain targeting of solid tumors. Cancer Res. 2010 Mar 15; 70(6):2165-70. Arrach N, Cheng P, Zhao M, Santiviago CA, Hoffman RM, McClelland M. PMID: 20231149; PMCID: PMC4103738.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansAnimalsCells
    136. Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species. PLoS One. 2010 Mar 08; 5(3):e9556. Kucerova E, Clifton SW, Xia XQ, Long F, Porwollik S, Fulton L, Fronick C, Minx P, Kyung K, Warren W, Fulton R, Feng D, Wollam A, Shah N, Bhonagiri V, Nash WE, Hallsworth-Pepin K, Wilson RK, McClelland M, Forsythe SJ. PMID: 20221447; PMCID: PMC2833190.
      View in: PubMed   Mentions: 75     Fields:    Translation:HumansAnimalsCells
    137. Development of a DNA microarray to detect antimicrobial resistance genes identified in the National Center for Biotechnology Information database. Microb Drug Resist. 2010 Mar; 16(1):9-19. Frye JG, Lindsey RL, Rondeau G, Porwollik S, Long F, McClelland M, Jackson CR, Englen MD, Meinersmann RJ, Berrang ME, Davis JA, Barrett JB, Turpin JB, Thitaram SN, Fedorka-Cray PJ. PMID: 19916789; PMCID: PMC3116450.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCells
    138. Spontaneous excision of the Salmonella enterica serovar Enteritidis-specific defective prophage-like element phiSE14. J Bacteriol. 2010 Apr; 192(8):2246-54. Santiviago CA, Blondel CJ, Quezada CP, Silva CA, Tobar PM, Porwollik S, McClelland M, Andrews-Polymenis HL, Toro CS, Zaldívar M, Contreras I. PMID: 20172996; PMCID: PMC2849447.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    139. Distinct DNA methylation profiles between adenocarcinoma and squamous cell carcinoma of human uterine cervix. Oncol Res. 2010; 18(9):401-8. Lee EJ, Mcclelland M, Wang Y, Long F, Choi SH, Lee JH. PMID: 20524398.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    140. Fitness costs and stability of a high-level ciprofloxacin resistance phenotype in Salmonella enterica serotype enteritidis: reduced infectivity associated with decreased expression of Salmonella pathogenicity island 1 genes. Antimicrob Agents Chemother. 2010 Jan; 54(1):367-74. O'Regan E, Quinn T, Frye JG, Pagès JM, Porwollik S, Fedorka-Cray PJ, McClelland M, Fanning S. PMID: 19917752; PMCID: PMC2798541.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    141. Analyzing microarray data using WebArray. Cold Spring Harb Protoc. 2009 Aug; 2009(8):pdb.prot5260. Wang Y, McClelland M, Xia XQ. PMID: 20147236.
      View in: PubMed   Mentions: 12     Fields:    
    142. WebArrayDB: cross-platform microarray data analysis and public data repository. Bioinformatics. 2009 Sep 15; 25(18):2425-9. Xia XQ, McClelland M, Porwollik S, Song W, Cong X, Wang Y. PMID: 19602526; PMCID: PMC2735672.
      View in: PubMed   Mentions: 29     Fields:    
    143. Analysis of pools of targeted Salmonella deletion mutants identifies novel genes affecting fitness during competitive infection in mice. PLoS Pathog. 2009 Jul; 5(7):e1000477. Santiviago CA, Reynolds MM, Porwollik S, Choi SH, Long F, Andrews-Polymenis HL, McClelland M. PMID: 19578432; PMCID: PMC2698986.
      View in: PubMed   Mentions: 114     Fields:    Translation:AnimalsCells
    144. Novel genetic tools for studying food-borne Salmonella. Curr Opin Biotechnol. 2009 Apr; 20(2):149-57. Andrews-Polymenis HL, Santiviago CA, McClelland M. PMID: 19285855; PMCID: PMC2762399.
      View in: PubMed   Mentions: 6     Fields:    Translation:CellsPHPublic Health
    145. Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation. PLoS One. 2009; 4(3):e4809. Ansong C, Yoon H, Porwollik S, Mottaz-Brewer H, Petritis BO, Jaitly N, Adkins JN, McClelland M, Heffron F, Smith RD. PMID: 19277208; PMCID: PMC2652828.
      View in: PubMed   Mentions: 73     Fields:    Translation:AnimalsCells
    146. Genome-wide analysis of the PreA/PreB (QseB/QseC) regulon of Salmonella enterica serovar Typhimurium. BMC Microbiol. 2009 Feb 23; 9:42. Merighi M, Septer AN, Carroll-Portillo A, Bhatiya A, Porwollik S, McClelland M, Gunn JS. PMID: 19236707; PMCID: PMC2653508.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansAnimalsCells
    147. Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium. PLoS Pathog. 2009 Feb; 5(2):e1000306. Yoon H, McDermott JE, Porwollik S, McClelland M, Heffron F. PMID: 19229334; PMCID: PMC2639726.
      View in: PubMed   Mentions: 82     Fields:    Translation:AnimalsCells
    148. Media ion composition controls regulatory and virulence response of Salmonella in spaceflight. PLoS One. 2008; 3(12):e3923. Wilson JW, Ott CM, Quick L, Davis R, Höner zu Bentrup K, Crabbé A, Richter E, Sarker S, Barrila J, Porwollik S, Cheng P, McClelland M, Tsaprailis G, Radabaugh T, Hunt A, Shah M, Nelman-Gonzalez M, Hing S, Parra M, Dumars P, Norwood K, Bober R, Devich J, Ruggles A, CdeBaca A, Narayan S, Benjamin J, Goulart C, Rupert M, Catella L, Schurr MJ, Buchanan K, Morici L, McCracken J, Porter MD, Pierson DL, Smith SM, Mergeay M, Leys N, Stefanyshyn-Piper HM, Gorie D, Nickerson CA. PMID: 19079590; PMCID: PMC2592540.
      View in: PubMed   Mentions: 65     Fields:    Translation:AnimalsCells
    149. Egr1 regulates the coordinated expression of numerous EGF receptor target genes as identified by ChIP-on-chip. Genome Biol. 2008; 9(11):R166. Arora S, Wang Y, Jia Z, Vardar-Sengul S, Munawar A, Doctor KS, Birrer M, McClelland M, Adamson E, Mercola D. PMID: 19032775; PMCID: PMC2614498.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansCells
    150. The CorA Mg2+ channel is required for the virulence of Salmonella enterica serovar typhimurium. J Bacteriol. 2008 Oct; 190(19):6517-23. Papp-Wallace KM, Nartea M, Kehres DG, Porwollik S, McClelland M, Libby SJ, Fang FC, Maguire ME. PMID: 18676664; PMCID: PMC2566004.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansAnimalsCells
    151. The wisdom of the commons: ensemble tree classifiers for prostate cancer prognosis. Bioinformatics. 2009 Jan 01; 25(1):54-60. Koziol JA, Feng AC, Jia Z, Wang Y, Goodison S, McClelland M, Mercola D. PMID: 18628288; PMCID: PMC2638928.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    152. Salmonella promoters preferentially activated inside tumors. Cancer Res. 2008 Jun 15; 68(12):4827-32. Arrach N, Zhao M, Porwollik S, Hoffman RM, McClelland M. PMID: 18559530.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansAnimalsCells
    153. Salmonella serovar identification using PCR-based detection of gene presence and absence. J Clin Microbiol. 2008 Aug; 46(8):2581-9. Arrach N, Porwollik S, Cheng P, Cho A, Long F, Choi SH, McClelland M. PMID: 18524964; PMCID: PMC2519459.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
    154. Microarray for molecular typing of Salmonella enterica serovars. Mol Cell Probes. 2008 Aug; 22(4):238-43. Scaria J, Palaniappan RU, Chiu D, Phan JA, Ponnala L, McDonough P, Grohn YT, Porwollik S, McClelland M, Chiou CS, Chu C, Chang YF. PMID: 18554865; PMCID: PMC2766089.
      View in: PubMed   Mentions: 19     Fields:    Translation:Cells
    155. Nitric oxide antagonizes the acid tolerance response that protects Salmonella against innate gastric defenses. PLoS One. 2008 Mar 19; 3(3):e1833. Bourret TJ, Porwollik S, McClelland M, Zhao R, Greco T, Ischiropoulos H, Vázquez-Torres A. PMID: 18350168; PMCID: PMC2266805.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    156. Chromatin modifications induced by PML-RARalpha repress critical targets in leukemogenesis as analyzed by ChIP-Chip. Blood. 2008 Mar 01; 111(5):2887-95. Hoemme C, Peerzada A, Behre G, Wang Y, McClelland M, Nieselt K, Zschunke M, Disselhoff C, Agrawal S, Isken F, Tidow N, Berdel WE, Serve H, Müller-Tidow C. PMID: 18024792; PMCID: PMC2254548.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansCells
    157. Toxicogenomic analysis incorporating operon-transcriptional coupling and toxicant concentration-expression response: analysis of MX-treated Salmonella. BMC Bioinformatics. 2007 Oct 09; 8:378. Ward WO, Swartz CD, Porwollik S, Warren SH, Hanley NM, Knapp GW, McClelland M, DeMarini DM. PMID: 17925033; PMCID: PMC2225428.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    158. The RcsCDB signaling system and swarming motility in Salmonella enterica serovar typhimurium: dual regulation of flagellar and SPI-2 virulence genes. J Bacteriol. 2007 Dec; 189(23):8447-57. Wang Q, Zhao Y, McClelland M, Harshey RM. PMID: 17905992; PMCID: PMC2168921.
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    159. Microarray analysis of Mu transposition in Salmonella enterica, serovar Typhimurium: transposon exclusion by high-density DNA binding proteins. Mol Microbiol. 2007 Oct; 66(2):315-28. Manna D, Porwollik S, McClelland M, Tan R, Higgins NP. PMID: 17850262.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    160. Delineation of the Salmonella enterica serovar Typhimurium HilA regulon through genome-wide location and transcript analysis. J Bacteriol. 2007 Jul; 189(13):4587-96. Thijs IM, De Keersmaecker SC, Fadda A, Engelen K, Zhao H, McClelland M, Marchal K, Vanderleyden J. PMID: 17483226; PMCID: PMC1913449.
      View in: PubMed   Mentions: 43     Fields:    Translation:Cells
    161. FNR is a global regulator of virulence and anaerobic metabolism in Salmonella enterica serovar Typhimurium (ATCC 14028s). J Bacteriol. 2007 Mar; 189(6):2262-73. Fink RC, Evans MR, Porwollik S, Vazquez-Torres A, Jones-Carson J, Troxell B, Libby SJ, McClelland M, Hassan HM. PMID: 17220229; PMCID: PMC1899381.
      View in: PubMed   Mentions: 69     Fields:    Translation:HumansAnimalsCells
    162. Determination of the gene content of Salmonella genomes by microarray analysis. Methods Mol Biol. 2007; 394:89-103. Porwollik S, McClelland M. PMID: 18363233.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    163. PhoP-induced genes within Salmonella pathogenicity island 1. J Bacteriol. 2006 Oct; 188(19):6889-98. Aguirre A, Cabeza ML, Spinelli SV, McClelland M, García Véscovi E, Soncini FC. PMID: 16980492; PMCID: PMC1595516.
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    164. [Salmonella transcriptome during macrophage infection]. Med Sci (Paris). 2006 Oct; 22(10):792-3. Faucher SP, Porwollik S, Dozois CM, McClelland M, Daigle F. PMID: 17026919.
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    165. Uncovering a large set of genes that affect surface motility in Salmonella enterica serovar Typhimurium. J Bacteriol. 2006 Nov; 188(22):7981-4. Wang Q, Mariconda S, Suzuki A, McClelland M, Harshey RM. PMID: 16980469; PMCID: PMC1636317.
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    166. Identification of specific gene sequences conserved in contemporary epidemic strains of Salmonella enterica. Appl Environ Microbiol. 2006 Nov; 72(11):6938-47. Kang MS, Besser TE, Hancock DD, Porwollik S, McClelland M, Call DR. PMID: 16963552; PMCID: PMC1636165.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCellsPHPublic Health
    167. Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella. Science. 2006 Jul 14; 313(5784):236-8. Navarre WW, Porwollik S, Wang Y, McClelland M, Rosen H, Libby SJ, Fang FC. PMID: 16763111.
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    168. Salmonella enterica serovar Typhimurium requires the Lpf, Pef, and Tafi fimbriae for biofilm formation on HEp-2 tissue culture cells and chicken intestinal epithelium. Infect Immun. 2006 Jun; 74(6):3156-69. Ledeboer NA, Frye JG, McClelland M, Jones BD. PMID: 16714543; PMCID: PMC1479237.
      View in: PubMed   Mentions: 62     Fields:    Translation:HumansAnimalsCells
    169. Identification of new flagellar genes of Salmonella enterica serovar Typhimurium. J Bacteriol. 2006 Mar; 188(6):2233-43. Frye J, Karlinsey JE, Felise HR, Marzolf B, Dowidar N, McClelland M, Hughes KT. PMID: 16513753; PMCID: PMC1428135.
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    170. Transcriptome of Salmonella enterica serovar Typhi within macrophages revealed through the selective capture of transcribed sequences. Proc Natl Acad Sci U S A. 2006 Feb 07; 103(6):1906-11. Faucher SP, Porwollik S, Dozois CM, McClelland M, Daigle F. PMID: 16443683; PMCID: PMC1413645.
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    171. DNA microarray detection of antimicrobial resistance genes in diverse bacteria. Int J Antimicrob Agents. 2006 Feb; 27(2):138-51. Frye JG, Jesse T, Long F, Rondeau G, Porwollik S, McClelland M, Jackson CR, Englen M, Fedorka-Cray PJ. PMID: 16427254.
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    172. Messenger RNAs under differential translational control in Ki-ras-transformed cells. Mol Cancer Res. 2006 Jan; 4(1):47-60. Spence J, Duggan BM, Eckhardt C, McClelland M, Mercola D. PMID: 16446406.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    173. WebArray: an online platform for microarray data analysis. BMC Bioinformatics. 2005 Dec 21; 6:306. Xia X, McClelland M, Wang Y. PMID: 16371165; PMCID: PMC1327694.
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    174. "Promoter array" studies identify cohorts of genes directly regulated by methylation, copy number change, or transcription factor binding in human cancer cells. Ann N Y Acad Sci. 2005 Nov; 1058:162-85. Wang Y, Hayakawa J, Long F, Yu Q, Cho AH, Rondeau G, Welsh J, Mittal S, De Belle I, Adamson E, McClelland M, Mercola D. PMID: 16394135.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    175. Correlation of phenotype with the genotype of egg-contaminating Salmonella enterica serovar Enteritidis. Appl Environ Microbiol. 2005 Aug; 71(8):4388-99. Morales CA, Porwollik S, Frye JG, Kinde H, McClelland M, Guard-Bouldin J. PMID: 16085829; PMCID: PMC1183325.
      View in: PubMed   Mentions: 25     Fields:    Translation:AnimalsCellsPHPublic Health
    176. Survey of differentially methylated promoters in prostate cancer cell lines. Neoplasia. 2005 Aug; 7(8):748-60. Wang Y, Yu Q, Cho AH, Rondeau G, Welsh J, Adamson E, Mercola D, McClelland M. PMID: 16207477; PMCID: PMC1501885.
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    177. Enhanced microarray performance using low complexity representations of the transcriptome. Nucleic Acids Res. 2005 Jun 24; 33(11):e100. Rondeau G, McClelland M, Nguyen T, Risques R, Wang Y, Judex M, Cho AH, Welsh J. PMID: 15987785; PMCID: PMC1159120.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    178. Alternative sigma factor interactions in Salmonella: sigma and sigma promote antioxidant defences by enhancing sigma levels. Mol Microbiol. 2005 May; 56(3):811-23. Bang IS, Frye JG, McClelland M, Velayudhan J, Fang FC. PMID: 15819634.
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    179. Co-regulation of Salmonella enterica genes required for virulence and resistance to antimicrobial peptides by SlyA and PhoP/PhoQ. Mol Microbiol. 2005 Apr; 56(2):492-508. Navarre WW, Halsey TA, Walthers D, Frye J, McClelland M, Potter JL, Kenney LJ, Gunn JS, Fang FC, Libby SJ. PMID: 15813739.
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    180. Host gene expression changes and DNA amplification during temperate phage induction. J Bacteriol. 2005 Feb; 187(4):1485-92. Frye JG, Porwollik S, Blackmer F, Cheng P, McClelland M. PMID: 15687213; PMCID: PMC545606.
      View in: PubMed   Mentions: 36     Fields:    Translation:Cells
    181. Pigeon-associated strains of Salmonella enterica serovar Typhimurium phage type DT2 have genomic rearrangements at rRNA operons. Infect Immun. 2004 Dec; 72(12):7338-41. Helm RA, Porwollik S, Stanley AE, Maloy S, McClelland M, Rabsch W, Eisenstark A. PMID: 15557664; PMCID: PMC529114.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    182. Identification of promoters bound by c-Jun/ATF2 during rapid large-scale gene activation following genotoxic stress. Mol Cell. 2004 Nov 19; 16(4):521-35. Hayakawa J, Mittal S, Wang Y, Korkmaz KS, Adamson E, English C, Ohmichi M, Omichi M, McClelland M, Mercola D. PMID: 15546613.
      View in: PubMed   Mentions: 87     Fields:    Translation:HumansCells
    183. Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid. Nat Genet. 2004 Dec; 36(12):1268-74. McClelland M, Sanderson KE, Clifton SW, Latreille P, Porwollik S, Sabo A, Meyer R, Bieri T, Ozersky P, McLellan M, Harkins CR, Wang C, Nguyen C, Berghoff A, Elliott G, Kohlberg S, Strong C, Du F, Carter J, Kremizki C, Layman D, Leonard S, Sun H, Fulton L, Nash W, Miner T, Minx P, Delehaunty K, Fronick C, Magrini V, Nhan M, Warren W, Florea L, Spieth J, Wilson RK. PMID: 15531882.
      View in: PubMed   Mentions: 201     Fields:    Translation:HumansCells
    184. Host restriction of Salmonella enterica serotype Typhimurium pigeon isolates does not correlate with loss of discrete genes. J Bacteriol. 2004 May; 186(9):2619-28. Andrews-Polymenis HL, Rabsch W, Porwollik S, McClelland M, Rosetti C, Adams LG, Bäumler AJ. PMID: 15090502; PMCID: PMC387805.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    185. Salmonella enterica serovar Typhi strains from which SPI7, a 134-kilobase island with genes for Vi exopolysaccharide and other functions, has been deleted. J Bacteriol. 2004 May; 186(10):3214-23. Nair S, Alokam S, Kothapalli S, Porwollik S, Proctor E, Choy C, McClelland M, Liu SL, Sanderson KE. PMID: 15126484; PMCID: PMC400635.
      View in: PubMed   Mentions: 31     Fields:    Translation:Cells
    186. Flagellin fusion proteins as adjuvants or vaccines induce specific immune responses. Infect Immun. 2004 May; 72(5):2810-6. Cuadros C, Lopez-Hernandez FJ, Dominguez AL, McClelland M, Lustgarten J. PMID: 15102791; PMCID: PMC387897.
      View in: PubMed   Mentions: 59     Fields:    Translation:AnimalsCells
    187. Gene expression patterns during swarming in Salmonella typhimurium: genes specific to surface growth and putative new motility and pathogenicity genes. Mol Microbiol. 2004 Apr; 52(1):169-87. Wang Q, Frye JG, McClelland M, Harshey RM. PMID: 15049819.
      View in: PubMed   Mentions: 117     Fields:    Translation:Cells
    188. DNA amplification and rearrangements in archival Salmonella enterica serovar Typhimurium LT2 cultures. J Bacteriol. 2004 Mar; 186(6):1678-82. Porwollik S, Wong RM, Helm RA, Edwards KK, Calcutt M, Eisenstark A, McClelland M. PMID: 14996798; PMCID: PMC355959.
      View in: PubMed   Mentions: 18     Fields:    Translation:Cells
    189. In silico dissection of cell-type-associated patterns of gene expression in prostate cancer. Proc Natl Acad Sci U S A. 2004 Jan 13; 101(2):615-20. Stuart RO, Wachsman W, Berry CC, Wang-Rodriguez J, Wasserman L, Klacansky I, Masys D, Arden K, Goodison S, McClelland M, Wang Y, Sawyers A, Kalcheva I, Tarin D, Mercola D. PMID: 14722351; PMCID: PMC327196.
      View in: PubMed   Mentions: 95     Fields:    Translation:HumansCells
    190. Detection of a Salmonella enterica serovar California strain spreading in spanish feed mills and genetic characterization with DNA microarrays. Appl Environ Microbiol. 2003 Dec; 69(12):7531-4. Alvarez J, Porwollik S, Laconcha I, Gisakis V, Vivanco AB, Gonzalez I, Echenagusia S, Zabala N, Blackmer F, McClelland M, Rementeria A, Garaizar J. PMID: 14660409; PMCID: PMC309902.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    191. Egr1 signaling in prostate cancer. Cancer Biol Ther. 2003 Nov-Dec; 2(6):617-22. Adamson E, de Belle I, Mittal S, Wang Y, Hayakawa J, Korkmaz K, O'Hagan D, McClelland M, Mercola D. PMID: 14688464.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimalsCells
    192. Regulation of Salmonella typhimurium virulence gene expression by cationic antimicrobial peptides. Mol Microbiol. 2003 Oct; 50(1):219-30. Bader MW, Navarre WW, Shiau W, Nikaido H, Frye JG, McClelland M, Fang FC, Miller SI. PMID: 14507376.
      View in: PubMed   Mentions: 111     Fields:    Translation:Cells
    193. Lateral gene transfer in Salmonella. Microbes Infect. 2003 Sep; 5(11):977-89. Porwollik S, McClelland M. PMID: 12941390.
      View in: PubMed   Mentions: 54     Fields:    Translation:Cells
    194. Global regulation by CsrA in Salmonella typhimurium. Mol Microbiol. 2003 Jun; 48(6):1633-45. Lawhon SD, Frye JG, Suyemoto M, Porwollik S, McClelland M, Altier C. PMID: 12791144.
      View in: PubMed   Mentions: 114     Fields:    Translation:HumansAnimalsCells
    195. A non-redundant microarray of genes for two related bacteria. Nucleic Acids Res. 2003 Apr 01; 31(7):1869-76. Porwollik S, Frye J, Florea LD, Blackmer F, McClelland M. PMID: 12655003; PMCID: PMC152813.
      View in: PubMed   Mentions: 37     Fields:    Translation:Cells
    196. Microarray analysis using RNA arbitrarily primed PCR. Methods Mol Biol. 2003; 226:245-54. Ringquist S, Rondeau G, Risques RA, Higashiyama T, Wang YP, Porwollik S, Boyle D, McClelland M, Welsh J. PMID: 12958507.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    197. Microarray analysis identifies Salmonella genes belonging to the low-shear modeled microgravity regulon. Proc Natl Acad Sci U S A. 2002 Oct 15; 99(21):13807-12. Wilson JW, Ramamurthy R, Porwollik S, McClelland M, Hammond T, Allen P, Ott CM, Pierson DL, Nickerson CA. PMID: 12370447; PMCID: PMC129779.
      View in: PubMed   Mentions: 61     Fields:    Translation:Cells
    198. DNA microarray-based typing of an atypical monophasic Salmonella enterica serovar. J Clin Microbiol. 2002 Jun; 40(6):2074-8. Garaizar J, Porwollik S, Echeita A, Rementeria A, Herrera S, Wong RM, Frye J, Usera MA, McClelland M. PMID: 12037067; PMCID: PMC130817.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansCells
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