Loading...

Mcclelland, Michael

TitleProfessor
InstitutionUniversity of California, Irvine
DepartmentMicrobiology and Molecular Genetics
Address1001 Health Sciences Road
CA 92697-3950
Phone(858) 621-3906
vCardDownload vCard

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
    List All   |   Timeline
    1. George AS, Cox CE, Desai P, Porwollik S, Chu W, de Moraes MH, McClelland M, Brandl MT, Teplitski M. Erratum for George et al., "Interactions of Salmonella enterica Serovar Typhimurium and Pectobacterium carotovorum within a Tomato Soft Rot". Appl Environ Microbiol. 2018 Jun 15; 84(12). PMID: 29853470.
      View in: PubMed
    2. de Moraes MH, Soto EB, Salas González I, Desai P, Chu W, Porwollik S, McClelland M, Teplitski M. Genome-Wide Comparative Functional Analyses Reveal Adaptations of Salmonella sv. Newport to a Plant Colonization Lifestyle. Front Microbiol. 2018; 9:877. PMID: 29867794.
      View in: PubMed
    3. Porwollik S, Genovese K, Chu W, Loneragan GH, Edrington T, McClelland M. Neutral barcoding of genomes reveals the dynamics of Salmonella colonization in cattle and their peripheral lymph nodes. Vet Microbiol. 2018 Jul; 220:97-106. PMID: 29885808.
      View in: PubMed
    4. Bohm K, Porwollik S, Chu W, Dover JA, Gilcrease EB, Casjens SR, McClelland M, Parent KN. Genes affecting progression of bacteriophage P22 infection in Salmonella identified by transposon and single gene deletion screens. Mol Microbiol. 2018 May; 108(3):288-305. PMID: 29470858.
      View in: PubMed
    5. George AS, Cox CE, Desai P, Porwollik S, Chu W, de Moraes MH, McClelland M, Brandl MT, Teplitski M. Interactions of Salmonella enterica Serovar Typhimurium and Pectobacterium carotovorum within a Tomato Soft Rot. Appl Environ Microbiol. 2018 03 01; 84(5). PMID: 29247060.
      View in: PubMed
    6. Yang HJ, Bogomolnaya L, McClelland M, Andrews-Polymenis H. De novo pyrimidine synthesis is necessary for intestinal colonization of Salmonella Typhimurium in chicks. PLoS One. 2017; 12(10):e0183751. PMID: 29040285.
      View in: PubMed
    7. Kollanoor Johny A, Frye JG, Donoghue A, Donoghue DJ, Porwollik S, McClelland M, Venkitanarayanan K. Gene Expression Response of Salmonella enterica Serotype Enteritidis Phage Type 8 to Subinhibitory Concentrations of the Plant-Derived Compounds Trans-Cinnamaldehyde and Eugenol. Front Microbiol. 2017; 8:1828. PMID: 29018419.
      View in: PubMed
    8. Borah P, Porwollik S, Desai P, Nayak P, Borah PP, Cheng P, McClelland M. A simplified multiplex PCR-based typing method for common Salmonella enterica serovars supported by online server-based detection system. Indian J Med Res. 2017 Aug; 146(2):272-280. PMID: 29265030.
      View in: PubMed
    9. Bono AC, Hartman CE, Solaimanpour S, Tong H, Porwollik S, McClelland M, Frye JG, Mrázek J, Karls AC. Novel DNA Binding and Regulatory Activities for s54 (RpoN) in Salmonella enterica Serovar Typhimurium 14028s. J Bacteriol. 2017 06 15; 199(12). PMID: 28373272.
      View in: PubMed
    10. Feasey NA, Hadfield J, Keddy KH, Dallman TJ, Jacobs J, Deng X, Wigley P, Barquist L, Langridge GC, Feltwell T, Harris SR, Mather AE, Fookes M, Aslett M, Msefula C, Kariuki S, Maclennan CA, Onsare RS, Weill FX, Le Hello S, Smith AM, McClelland M, Desai P, Parry CM, Cheesbrough J, French N, Campos J, Chabalgoity JA, Betancor L, Hopkins KL, Nair S, Humphrey TJ, Lunguya O, Cogan TA, Tapia MD, Sow SO, Tennant SM, Bornstein K, Levine MM, Lacharme-Lora L, Everett DB, Kingsley RA, Parkhill J, Heyderman RS, Dougan G, Gordon MA, Thomson NR. Erratum: Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings. Nat Genet. 2017 03 30; 49(4):651. PMID: 28358127.
      View in: PubMed
    11. de Moraes MH, Desai P, Porwollik S, Canals R, Perez DR, Chu W, McClelland M, Teplitski M. Salmonella Persistence in Tomatoes Requires a Distinct Set of Metabolic Functions Identified by Transposon Insertion Sequencing. Appl Environ Microbiol. 2017 Mar 01; 83(5). PMID: 28039131.
      View in: PubMed
    12. McLaughlin PA, McClelland M, Yang HJ, Porwollik S, Bogomolnaya L, Chen JS, Andrews-Polymenis H, van der Velden AW. Contribution of Asparagine Catabolism to Salmonella Virulence. Infect Immun. 2017 02; 85(2). PMID: 27849183.
      View in: PubMed
    13. Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Barrett JB, Frye JG. Draft Genome Sequence of Salmonella enterica subsp. diarizonae Serovar 61:k:1,5,(7) Strain CRJJGF_00165 (Phylum Gammaproteobacteria). Genome Announc. 2016 Nov 23; 4(6). PMID: 27881547.
      View in: PubMed
    14. Wrande M, Andrews-Polymenis H, Twedt DJ, Steele-Mortimer O, Porwollik S, McClelland M, Knodler LA. Genetic Determinants of Salmonella enterica Serovar Typhimurium Proliferation in the Cytosol of Epithelial Cells. Infect Immun. 2016 Dec; 84(12):3517-3526. PMID: 27698022.
      View in: PubMed
    15. Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Frye JG. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Orion Strain CRJJGF_00093 (Phylum Gammaproteobacteria). Genome Announc. 2016 Sep 29; 4(5). PMID: 27688320.
      View in: PubMed
    16. Shomer I, Avisar A, Desai P, Azriel S, Smollan G, Belausov N, Keller N, Glikman D, Maor Y, Peretz A, McClelland M, Rahav G, Gal-Mor O. Genetic and Phenotypic Characterization of a Salmonella enterica serovar Enteritidis Emerging Strain with Superior Intra-macrophage Replication Phenotype. Front Microbiol. 2016; 7:1468. PMID: 27695450.
      View in: PubMed
    17. Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Frye JG. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Bardo Strain CRJJGF_00099 (Phylum Gammaproteobacteria). Genome Announc. 2016 Sep 15; 4(5). PMID: 27634995.
      View in: PubMed
    18. Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Frye JG. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Blockley Strain CRJJGF_00147 (Phylum Gammaproteobacteria). Genome Announc. 2016 Sep 08; 4(5). PMID: 27609923.
      View in: PubMed
    19. Marvasi M, de Moraes MH, Salas-Gonzalez I, Porwollik S, Farias M, McClelland M, Teplitski M. Involvement of the Rcs regulon in the persistence of Salmonella Typhimurium in tomatoes. Environ Microbiol Rep. 2016 Aug 25. PMID: 27558204.
      View in: PubMed
    20. Feasey NA, Hadfield J, Keddy KH, Dallman TJ, Jacobs J, Deng X, Wigley P, Barquist L, Langridge GC, Feltwell T, Harris SR, Mather AE, Fookes M, Aslett M, Msefula C, Kariuki S, Maclennan CA, Onsare RS, Weill FX, Le Hello S, Smith AM, McClelland M, Desai P, Parry CM, Cheesbrough J, French N, Campos J, Chabalgoity JA, Betancor L, Hopkins KL, Nair S, Humphrey TJ, Lunguya O, Cogan TA, Tapia MD, Sow SO, Tennant SM, Bornstein K, Levine MM, Lacharme-Lora L, Everett DB, Kingsley RA, Parkhill J, Heyderman RS, Dougan G, Gordon MA, Thomson NR. Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings. Nat Genet. 2016 10; 48(10):1211-1217. PMID: 27548315.
      View in: PubMed
    21. Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Frye JG. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Widemarsh Strain CRJJGF_00058 (Phylum Gammaproteobacteria). Genome Announc. 2016 Jul 14; 4(4). PMID: 27417830; PMCID: PMC4945790.
    22. Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Frye JG. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Lille Strain CRJJGF_000101 (Phylum Gammaproteobacteria). Genome Announc. 2016 Jul 14; 4(4). PMID: 27417829; PMCID: PMC4945789.
    23. Gupta SK, McMillan EA, Jackson CR, Desai PT, Porwollik S, McClelland M, Hiott LM, Humayoun SB, Frye JG. Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Kiambu Strain CRJJGF_00061 (Phylum Gammaproteobacteria). Genome Announc. 2016 Jul 07; 4(4). PMID: 27389263; PMCID: PMC4939780.
    24. Silva-Valenzuela CA, Desai PT, Molina-Quiroz RC, Pezoa D, Zhang Y, Porwollik S, Zhao M, Hoffman RM, Contreras I, Santiviago CA, McClelland M. Solid tumors provide niche-specific conditions that lead to preferential growth of Salmonella. Oncotarget. 2016 Jun 07; 7(23):35169-80. PMID: 27145267.
      View in: PubMed
    25. Crawford MA, Henard CA, Tapscott T, Porwollik S, McClelland M, Vázquez-Torres A. DksA-Dependent Transcriptional Regulation in Salmonella Experiencing Nitrosative Stress. Front Microbiol. 2016; 7:444. PMID: 27065993; PMCID: PMC4815678.
    26. Yang HJ, Bogomolnaya LM, Elfenbein JR, Endicott-Yazdani T, Reynolds MM, Porwollik S, Cheng P, Xia XQ, McClelland M, Andrews-Polymenis H. Novel Two-Step Hierarchical Screening of Mutant Pools Reveals Mutants under Selection in Chicks. Infect Immun. 2016 Apr; 84(4):1226-1238. PMID: 26857572.
      View in: PubMed
    27. Elhadad D, Desai P, Grassl GA, McClelland M, Rahav G, Gal-Mor O. Differences in Host Cell Invasion and Salmonella Pathogenicity Island 1 Expression between Salmonella enterica Serovar Paratyphi A and Nontyphoidal S. Typhimurium. Infect Immun. 2016 Apr; 84(4):1150-1165. PMID: 26857569.
      View in: PubMed
    28. McClelland M, Marzel A, Desai PT, Gal-Mor O. Reply to Yue. Clin Infect Dis. 2016 05 15; 62(10):1326-7. PMID: 26980876.
      View in: PubMed
    29. Liu Z, Yokoyama NN, Blair CA, Li X, Avizonis D, Wu XR, Uchio E, Youssef R, McClelland M, Pollak M, Zi X. High Sensitivity of an Ha-RAS Transgenic Model of Superficial Bladder Cancer to Metformin Is Associated with ~240-Fold Higher Drug Concentration in Urine than Serum. Mol Cancer Ther. 2016 Mar; 15(3):430-8. PMID: 26921394; PMCID: PMC4783238 [Available on 03/01/17].
    30. Silva-Valenzuela CA, Molina-Quiroz RC, Desai P, Valenzuela C, Porwollik S, Zhao M, Hoffman RM, Andrews-Polymenis H, Contreras I, Santiviago CA, McClelland M. Analysis of Two Complementary Single-Gene Deletion Mutant Libraries of Salmonella Typhimurium in Intraperitoneal Infection of BALB/c Mice. Front Microbiol. 2015; 6:1455. PMID: 26779130; PMCID: PMC4700939.
    31. Marzel A, Desai PT, Goren A, Schorr YI, Nissan I, Porwollik S, Valinsky L, McClelland M, Rahav G, Gal-Mor O. Persistent Infections by Nontyphoidal Salmonella in Humans: Epidemiology and Genetics. Clin Infect Dis. 2016 Apr 01; 62(7):879-886. PMID: 26740515; PMCID: PMC4787607 [Available on 04/01/17].
    32. Cox CE, Wright AC, McClelland M, Teplitski M. Influence of Salmonella enterica Serovar Typhimurium ssrB on Colonization of Eastern Oysters (Crassostrea virginica) as Revealed by a Promoter Probe Screen. Appl Environ Microbiol. 2016 01 01; 82(1):328-39. PMID: 26497459.
      View in: PubMed
    33. Elfenbein JR, Knodler LA, Nakayasu ES, Ansong C, Brewer HM, Bogomolnaya L, Adams LG, McClelland M, Adkins JN, Andrews-Polymenis HL. Multicopy Single-Stranded DNA Directs Intestinal Colonization of Enteric Pathogens. PLoS Genet. 2015 Sep; 11(9):e1005472. PMID: 26367458; PMCID: PMC4569332.
    34. Zhu J, Pan C, Jiang J, Deng M, Gao H, Men B, McClelland M, Mercola D, Zhong WD, Jia Z. Six stroma-based RNA markers diagnostic for prostate cancer in European-Americans validated at the RNA and protein levels in patients in China. Oncotarget. 2015 Jun 30; 6(18):16757-65. PMID: 26158290; PMCID: PMC4599305.
    35. Elhadad D, Desai P, Rahav G, McClelland M, Gal-Mor O. Flagellin Is Required for Host Cell Invasion and Normal Salmonella Pathogenicity Island 1 Expression by Salmonella enterica Serovar Paratyphi A. Infect Immun. 2015 Sep; 83(9):3355-68. PMID: 26056383; PMCID: PMC4534655.
    36. Chen X, McClelland M, Jia Z, Rahmatpanah FB, Sawyers A, Trent J, Duggan D, Mercola D. The identification of trans-associations between prostate cancer GWAS SNPs and RNA expression differences in tumor-adjacent stroma. Oncotarget. 2015 Jan 30; 6(3):1865-73. PMID: 25638161; PMCID: PMC4359337.
    37. Rahmatpanah FB, Jia Z, Chen X, Char JE, Men B, Franke AC, Jones FE, McClelland M, Mercola D. A class of genes in the HER2 regulon that is poised for transcription in breast cancer cell lines and expressed in human breast tumors. Oncotarget. 2015 Jan 20; 6(2):1286-301. PMID: 25428913; PMCID: PMC4359233.
    38. Warren AS, Aurrecoechea C, Brunk B, Desai P, Emrich S, Giraldo-Calderón GI, Harb O, Hix D, Lawson D, Machi D, Mao C, McClelland M, Nordberg E, Shukla M, Vosshall LB, Wattam AR, Will R, Yoo HS, Sobral B. RNA-Rocket: an RNA-Seq analysis resource for infectious disease research. Bioinformatics. 2015 May 01; 31(9):1496-8. PMID: 25573919; PMCID: PMC4410666.
    39. Elhadad D, McClelland M, Rahav G, Gal-Mor O. Feverlike Temperature is a Virulence Regulatory Cue Controlling the Motility and Host Cell Entry of Typhoidal Salmonella. J Infect Dis. 2015 Jul 01; 212(1):147-56. PMID: 25492917; PMCID: PMC4542590.
    40. Bogomolnaya LM, Aldrich L, Ragoza Y, Talamantes M, Andrews KD, McClelland M, Andrews-Polymenis HL. Identification of novel factors involved in modulating motility of Salmonella enterica serotype typhimurium. PLoS One. 2014; 9(11):e111513. PMID: 25369209; PMCID: PMC4219756.
    41. Cheng Y, Pedroso AA, Porwollik S, McClelland M, Lee MD, Kwan T, Zamperini K, Soni V, Sellers HS, Russell SM, Maurer JJ. rpoS-Regulated core genes involved in the competitive fitness of Salmonella enterica Serovar Kentucky in the intestines of chickens. Appl Environ Microbiol. 2015 Jan; 81(2):502-14. PMID: 25362062; PMCID: PMC4277580.
    42. Deng X, Desai PT, den Bakker HC, Mikoleit M, Tolar B, Trees E, Hendriksen RS, Frye JG, Porwollik S, Weimer BC, Wiedmann M, Weinstock GM, Fields PI, McClelland M. Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages. Emerg Infect Dis. 2014 Sep; 20(9):1481-9. PMID: 25147968; PMCID: PMC4178404.
    43. Wu J, Pugh R, Laughlin RC, Andrews-Polymenis H, McClelland M, Bäumler AJ, Adams LG. High-throughput assay to phenotype Salmonella enterica Typhimurium association, invasion, and replication in macrophages. J Vis Exp. 2014 Aug 11; (90):e51759. PMID: 25146526; PMCID: PMC4500590.
    44. Porwollik S, Santiviago CA, Cheng P, Long F, Desai P, Fredlund J, Srikumar S, Silva CA, Chu W, Chen X, Canals R, Reynolds MM, Bogomolnaya L, Shields C, Cui P, Guo J, Zheng Y, Endicott-Yazdani T, Yang HJ, Maple A, Ragoza Y, Blondel CJ, Valenzuela C, Andrews-Polymenis H, McClelland M. Defined single-gene and multi-gene deletion mutant collections in Salmonella enterica sv Typhimurium. PLoS One. 2014; 9(7):e99820. PMID: 25007190.
      View in: PubMed
    45. Lee C, Jia Z, Rahmatpanah F, Zhang Q, Zi X, McClelland M, Mercola D. Role of the adjacent stroma cells in prostate cancer development and progression: synergy between TGF-ß and IGF signaling. Biomed Res Int. 2014; 2014:502093. PMID: 25089270; PMCID: PMC4095744.
    46. Calderón PF, Morales EH, Acuña LG, Fuentes DN, Gil F, Porwollik S, McClelland M, Saavedra CP, Calderón IL. The small RNA RyhB homologs from Salmonella typhimurium participate in the response to S-nitrosoglutathione-induced stress. Biochem Biophys Res Commun. 2014 Jul 18; 450(1):641-5. PMID: 24937451.
      View in: PubMed
    47. Pontel LB, Scampoli NL, Porwollik S, Checa SK, McClelland M, Soncini FC. Identification of a Salmonella ancillary copper detoxification mechanism by a comparative analysis of the genome-wide transcriptional response to copper and zinc excess. Microbiology. 2014 Aug; 160(Pt 8):1659-1669. PMID: 24858080.
      View in: PubMed
    48. Marzel A, Desai PT, Nissan I, Schorr YI, Suez J, Valinsky L, Reisfeld A, Agmon V, Guard J, McClelland M, Rahav G, Gal-Mor O. Integrative analysis of Salmonellosis in Israel reveals association of Salmonella enterica Serovar 9,12:l,v:- with extraintestinal infections, dissemination of endemic S. enterica Serovar Typhimurium DT104 biotypes, and severe underreporting of outbreaks. J Clin Microbiol. 2014 Jun; 52(6):2078-88. PMID: 24719441; PMCID: PMC4042803.
    49. Benahmed FH, Gopinath GR, Wang H, Jean-Gilles Beaubrun J, Grim C, Cheng CM, McClelland M, Ayers S, Abbott J, Desai P, Frye JG, Weinstock G, Hammack TS, Hanes DE, Rasmussen MA, Davidson MK. Whole-Genome Sequencing of Salmonella enterica subsp. enterica Serovar Cubana Strains Isolated from Agricultural Sources. Genome Announc. 2014 Jan 23; 2(1). PMID: 24459266; PMCID: PMC3900898.
    50. Jia Z, Lilly MB, Koziol JA, Chen X, Xia XQ, Wang Y, Skarecky D, Sutton M, Sawyers A, Ruckle H, Carpenter PM, Wang-Rodriguez J, Jiang J, Deng M, Pan C, Zhu JG, McLaren CE, Gurley MJ, Lee C, McClelland M, Ahlering T, Kattan MW, Mercola D. Generation of "virtual" control groups for single arm prostate cancer adjuvant trials. PLoS One. 2014; 9(1):e85010. PMID: 24465467; PMCID: PMC3897405.
    51. Henard CA, Tapscott T, Crawford MA, Husain M, Doulias PT, Porwollik S, Liu L, McClelland M, Ischiropoulos H, Vázquez-Torres A. The 4-cysteine zinc-finger motif of the RNA polymerase regulator DksA serves as a thiol switch for sensing oxidative and nitrosative stress. Mol Microbiol. 2014 Feb; 91(4):790-804. PMID: 24354846; PMCID: PMC4053250.
    52. Morales EH, Collao B, Desai PT, Calderón IL, Gil F, Luraschi R, Porwollik S, McClelland M, Saavedra CP. Probing the ArcA regulon under aerobic/ROS conditions in Salmonella enterica serovar Typhimurium. BMC Genomics. 2013 Sep 17; 14:626. PMID: 24044554; PMCID: PMC3848847.
    53. Elfenbein JR, Endicott-Yazdani T, Porwollik S, Bogomolnaya LM, Cheng P, Guo J, Zheng Y, Yang HJ, Talamantes M, Shields C, Maple A, Ragoza Y, DeAtley K, Tatsch T, Cui P, Andrews KD, McClelland M, Lawhon SD, Andrews-Polymenis H. Novel determinants of intestinal colonization of Salmonella enterica serotype typhimurium identified in bovine enteric infection. Infect Immun. 2013 Nov; 81(11):4311-20. PMID: 24019407; PMCID: PMC3811824.
    54. Samuels DJ, Frye JG, Porwollik S, McClelland M, Mrázek J, Hoover TR, Karls AC. Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the s54 (RpoN) regulon of Salmonella Typhimurium LT2. BMC Genomics. 2013 Sep 05; 14:602. PMID: 24007446; PMCID: PMC3844500.
    55. Zheng Y, Sambou T, Bogomolnaya LM, Cirillo JD, McClelland M, Andrews-Polymenis H. The EAL domain containing protein STM2215 (rtn) is needed during Salmonella infection and has cyclic di-GMP phosphodiesterase activity. Mol Microbiol. 2013 Aug; 89(3):403-19. PMID: 23734719.
      View in: PubMed
    56. Lee C, Zhang Q, Kozlowski J, Brendler C, B Soares M, Dash A, McClelland M, Mercola D. Natural products and transforming growth factor-beta (TGF-ß) signaling in cancer development and progression. Curr Cancer Drug Targets. 2013 Jun; 13(5):500-5. PMID: 23597196.
      View in: PubMed
    57. Tomljenovic-Berube AM, Henriksbo B, Porwollik S, Cooper CA, Tuinema BR, McClelland M, Coombes BK. Mapping and regulation of genes within Salmonella pathogenicity island 12 that contribute to in vivo fitness of Salmonella enterica Serovar Typhimurium. Infect Immun. 2013 Jul; 81(7):2394-404. PMID: 23630960; PMCID: PMC3697593.
    58. Suez J, Porwollik S, Dagan A, Marzel A, Schorr YI, Desai PT, Agmon V, McClelland M, Rahav G, Gal-Mor O. Virulence gene profiling and pathogenicity characterization of non-typhoidal Salmonella accounted for invasive disease in humans. PLoS One. 2013; 8(3):e58449. PMID: 23505508; PMCID: PMC3591323.
    59. Chandra M, Cheng P, Rondeau G, Porwollik S, McClelland M. A single step multiplex PCR for identification of six diarrheagenic E. coli pathotypes and Salmonella. Int J Med Microbiol. 2013 May; 303(4):210-6. PMID: 23562277.
      View in: PubMed
    60. Desai PT, Porwollik S, Long F, Cheng P, Wollam A, Bhonagiri-Palsikar V, Hallsworth-Pepin K, Clifton SW, Weinstock GM, McClelland M. Evolutionary Genomics of Salmonella enterica Subspecies. MBio. 2013 Mar 05; 4(2). PMID: 23462113; PMCID: PMC3604774.
    61. Jia Z, Wang Y, Hu Y, McLaren C, Yu Y, Ye K, Xia XQ, Koziol JA, Lernhardt W, McClelland M, Mercola D. A sample selection strategy to boost the statistical power of signature detection in cancer expression profile studies. Anticancer Agents Med Chem. 2013 Feb; 13(2):203-11. PMID: 22934703; PMCID: PMC3786411.
    62. Hung CC, Garner CD, Slauch JM, Dwyer ZW, Lawhon SD, Frye JG, McClelland M, Ahmer BM, Altier C. The intestinal fatty acid propionate inhibits Salmonella invasion through the post-translational control of HilD. Mol Microbiol. 2013 Mar; 87(5):1045-60. PMID: 23289537; PMCID: PMC3581741.
    63. Das S, Singh S, McClelland M, Forst S, Gyaneshwar P. Characterization of an acid-inducible sulfatase in Salmonella enterica serovar typhimurium. Appl Environ Microbiol. 2013 Mar; 79(6):2092-5. PMID: 23315743; PMCID: PMC3592217.
    64. Kullas AL, McClelland M, Yang HJ, Tam JW, Torres A, Porwollik S, Mena P, McPhee JB, Bogomolnaya L, Andrews-Polymenis H, van der Velden AW. L-asparaginase II produced by Salmonella typhimurium inhibits T cell responses and mediates virulence. Cell Host Microbe. 2012 Dec 13; 12(6):791-8. PMID: 23245323; PMCID: PMC4361029.
    65. Joseph S, Desai P, Ji Y, Cummings CA, Shih R, Degoricija L, Rico A, Brzoska P, Hamby SE, Masood N, Hariri S, Sonbol H, Chuzhanova N, McClelland M, Furtado MR, Forsythe SJ. Comparative analysis of genome sequences covering the seven cronobacter species. PLoS One. 2012; 7(11):e49455. PMID: 23166675; PMCID: PMC3500316.
    66. Chen X, Xu S, McClelland M, Rahmatpanah F, Sawyers A, Jia Z, Mercola D. An accurate prostate cancer prognosticator using a seven-gene signature plus Gleason score and taking cell type heterogeneity into account. PLoS One. 2012; 7(9):e45178. PMID: 23028830; PMCID: PMC3460942.
    67. Periaswamy B, Maier L, Vishwakarma V, Slack E, Kremer M, Andrews-Polymenis HL, McClelland M, Grant AJ, Suar M, Hardt WD. Live attenuated S. Typhimurium vaccine with improved safety in immuno-compromised mice. PLoS One. 2012; 7(9):e45433. PMID: 23029007.
      View in: PubMed
    68. Gruzdev N, McClelland M, Porwollik S, Ofaim S, Pinto R, Saldinger-Sela S. Global transcriptional analysis of dehydrated Salmonella enterica serovar Typhimurium. Appl Environ Microbiol. 2012 Nov; 78(22):7866-75. PMID: 22941081; PMCID: PMC3485933.
    69. Jia Z, Rahmatpanah FB, Chen X, Lernhardt W, Wang Y, Xia XQ, Sawyers A, Sutton M, McClelland M, Mercola D. Expression changes in the stroma of prostate cancer predict subsequent relapse. PLoS One. 2012; 7(8):e41371. PMID: 22870216; PMCID: PMC3411675.
    70. Karlinsey JE, Bang IS, Becker LA, Frawley ER, Porwollik S, Robbins HF, Thomas VC, Urbano R, McClelland M, Fang FC. The NsrR regulon in nitrosative stress resistance of Salmonella enterica serovar Typhimurium. Mol Microbiol. 2012 Sep; 85(6):1179-93. PMID: 22831173; PMCID: PMC3438343.
    71. Lee C, Zhang Q, Zi X, Dash A, Soares MB, Rahmatpanah F, Jia Z, McClelland M, Mercola D. TGF-ß mediated DNA methylation in prostate cancer. Transl Androl Urol. 2012 Jun; 1(2):78-88. PMID: 25133096.
      View in: PubMed
    72. Canals R, Xia XQ, Fronick C, Clifton SW, Ahmer BM, Andrews-Polymenis HL, Porwollik S, McClelland M. High-throughput comparison of gene fitness among related bacteria. BMC Genomics. 2012 May 30; 13:212. PMID: 22646920; PMCID: PMC3487940.
    73. Morales EH, Calderón IL, Collao B, Gil F, Porwollik S, McClelland M, Saavedra CP. Hypochlorous acid and hydrogen peroxide-induced negative regulation of Salmonella enterica serovar Typhimurium ompW by the response regulator ArcA. BMC Microbiol. 2012 May 22; 12:63. PMID: 22545862; PMCID: PMC3358236.
    74. Sabbagh SC, Lepage C, McClelland M, Daigle F. Selection of Salmonella enterica serovar Typhi genes involved during interaction with human macrophages by screening of a transposon mutant library. PLoS One. 2012; 7(5):e36643. PMID: 22574205; PMCID: PMC3344905.
    75. Swearingen MC, Porwollik S, Desai PT, McClelland M, Ahmer BM. Virulence of 32 Salmonella strains in mice. PLoS One. 2012; 7(4):e36043. PMID: 22558320; PMCID: PMC3338620.
    76. Hao LY, Willis DK, Andrews-Polymenis H, McClelland M, Barak JD. Requirement of siderophore biosynthesis for plant colonization by Salmonella enterica. Appl Environ Microbiol. 2012 Jul; 78(13):4561-70. PMID: 22522683; PMCID: PMC3370490.
    77. Joerger RD, Sartori C, Frye JG, Turpin JB, Schmidt C, McClelland M, Porwollik S. Gene expression analysis of Salmonella enterica Enteritidis Nal(R) and Salmonella enterica Kentucky 3795 exposed to HCl and acetic acid in rich medium. Foodborne Pathog Dis. 2012 Apr; 9(4):331-7. PMID: 22356573; PMCID: PMC3353815.
    78. Rahmatpanah F, Jia Z, Chen X, Jones FE, McClelland M, Mercola D. Expression of HER2 in Breast Cancer Promotes a Massive Reorganization of Gene Activity and Suggests a Role for Epigenetic Regulation. J Data Mining Genomics Proteomics. 2012; 3. PMID: 24009986.
      View in: PubMed
    79. Agrawal-Singh S, Isken F, Agelopoulos K, Klein HU, Thoennissen NH, Koehler G, Hascher A, Bäumer N, Berdel WE, Thiede C, Ehninger G, Becker A, Schlenke P, Wang Y, McClelland M, Krug U, Koschmieder S, Büchner T, Yu DY, Singh SV, Hansen K, Serve H, Dugas M, Müller-Tidow C. Genome-wide analysis of histone H3 acetylation patterns in AML identifies PRDX2 as an epigenetically silenced tumor suppressor gene. Blood. 2012 Mar 08; 119(10):2346-57. PMID: 22207736.
      View in: PubMed
    80. Gal-Mor O, Suez J, Elhadad D, Porwollik S, Leshem E, Valinsky L, McClelland M, Schwartz E, Rahav G. Molecular and cellular characterization of a Salmonella enterica serovar Paratyphi a outbreak strain and the human immune response to infection. Clin Vaccine Immunol. 2012 Feb; 19(2):146-56. PMID: 22190395; PMCID: PMC3272918.
    81. Sheikh A, Charles RC, Sharmeen N, Rollins SM, Harris JB, Bhuiyan MS, Arifuzzaman M, Khanam F, Bukka A, Kalsy A, Porwollik S, Leung DT, Brooks WA, LaRocque RC, Hohmann EL, Cravioto A, Logvinenko T, Calderwood SB, McClelland M, Graham JE, Qadri F, Ryan ET. In vivo expression of Salmonella enterica serotype Typhi genes in the blood of patients with typhoid fever in Bangladesh. PLoS Negl Trop Dis. 2011 Dec; 5(12):e1419. PMID: 22180799; PMCID: PMC3236720.
    82. Silva CA, Blondel CJ, Quezada CP, Porwollik S, Andrews-Polymenis HL, Toro CS, Zaldívar M, Contreras I, McClelland M, Santiviago CA. Infection of mice by Salmonella enterica serovar Enteritidis involves additional genes that are absent in the genome of serovar Typhimurium. Infect Immun. 2012 Feb; 80(2):839-49. PMID: 22083712; PMCID: PMC3264302.
    83. Troxell B, Fink RC, Porwollik S, McClelland M, Hassan HM. The Fur regulon in anaerobically grown Salmonella enterica sv. Typhimurium: identification of new Fur targets. BMC Microbiol. 2011 Oct 21; 11:236. PMID: 22017966; PMCID: PMC3212961.
    84. Bie L, Zhao G, Cheng P, Rondeau G, Porwollik S, Ju Y, Xia XQ, McClelland M. The accuracy of survival time prediction for patients with glioma is improved by measuring mitotic spindle checkpoint gene expression. PLoS One. 2011; 6(10):e25631. PMID: 22022424; PMCID: PMC3192043.
    85. Kaniuk NA, Canadien V, Bagshaw RD, Bakowski M, Braun V, Landekic M, Mitra S, Huang J, Heo WD, Meyer T, Pelletier L, Andrews-Polymenis H, McClelland M, Pawson T, Grinstein S, Brumell JH. Salmonella exploits Arl8B-directed kinesin activity to promote endosome tubulation and cell-to-cell transfer. Cell Microbiol. 2011 Nov; 13(11):1812-23. PMID: 21824248.
      View in: PubMed
    86. Ansong C, Tolic N, Purvine SO, Porwollik S, Jones M, Yoon H, Payne SH, Martin JL, Burnet MC, Monroe ME, Venepally P, Smith RD, Peterson SN, Heffron F, McClelland M, Adkins JN. Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium. BMC Genomics. 2011 Aug 25; 12:433. PMID: 21867535; PMCID: PMC3174948.
    87. Lamichhane-Khadka R, Frye JG, Porwollik S, McClelland M, Maier RJ. Hydrogen-stimulated carbon acquisition and conservation in Salmonella enterica serovar Typhimurium. J Bacteriol. 2011 Oct; 193(20):5824-32. PMID: 21856852; PMCID: PMC3187206.
    88. Jia Z, Wang Y, Sawyers A, Yao H, Rahmatpanah F, Xia XQ, Xu Q, Pio R, Turan T, Koziol JA, Goodison S, Carpenter P, Wang-Rodriguez J, Simoneau A, Meyskens F, Sutton M, Lernhardt W, Beach T, Monforte J, McClelland M, Mercola D. Diagnosis of prostate cancer using differentially expressed genes in stroma. Cancer Res. 2011 Apr 01; 71(7):2476-87. PMID: 21459804; PMCID: PMC3071046.
    89. Evans MR, Fink RC, Vazquez-Torres A, Porwollik S, Jones-Carson J, McClelland M, Hassan HM. Analysis of the ArcA regulon in anaerobically grown Salmonella enterica sv. Typhimurium. BMC Microbiol. 2011 Mar 21; 11:58. PMID: 21418628; PMCID: PMC3075218.
    90. Reynolds MM, Bogomolnaya L, Guo J, Aldrich L, Bokhari D, Santiviago CA, McClelland M, Andrews-Polymenis H. Abrogation of the twin arginine transport system in Salmonella enterica serovar Typhimurium leads to colonization defects during infection. PLoS One. 2011 Jan 26; 6(1):e15800. PMID: 21298091; PMCID: PMC3027627.
    91. Tickenbrock L, Klein HU, Trento C, Hascher A, Göllner S, Bäumer N, Kuss R, Agrawal S, Bug G, Serve H, Thiede C, Ehninger G, Stadt UZ, McClelland M, Wang Y, Becker A, Koschmieder S, Berdel WE, Dugas M, Müller-Tidow C. Increased HDAC1 deposition at hematopoietic promoters in AML and its association with patient survival. Leuk Res. 2011 May; 35(5):620-5. PMID: 21176959.
      View in: PubMed
    92. Weatherspoon-Griffin N, Zhao G, Kong W, Kong Y, Andrews-Polymenis H, McClelland M, Shi Y. The CpxR/CpxA two-component system up-regulates two Tat-dependent peptidoglycan amidases to confer bacterial resistance to antimicrobial peptide. J Biol Chem. 2011 Feb 18; 286(7):5529-39. PMID: 21149452; PMCID: PMC3037666.
    93. Sheikh A, Charles RC, Rollins SM, Harris JB, Bhuiyan MS, Khanam F, Bukka A, Kalsy A, Porwollik S, Brooks WA, LaRocque RC, Hohmann EL, Cravioto A, Logvinenko T, Calderwood SB, McClelland M, Graham JE, Qadri F, Ryan ET. Analysis of Salmonella enterica serotype paratyphi A gene expression in the blood of bacteremic patients in Bangladesh. PLoS Negl Trop Dis. 2010 Dec 07; 4(12):e908. PMID: 21151879; PMCID: PMC2998432.
    94. Cairo S, Wang Y, de Reyniès A, Duroure K, Dahan J, Redon MJ, Fabre M, McClelland M, Wang XW, Croce CM, Buendia MA. Stem cell-like micro-RNA signature driven by Myc in aggressive liver cancer. Proc Natl Acad Sci U S A. 2010 Nov 23; 107(47):20471-6. PMID: 21059911; PMCID: PMC2996672.
    95. Noel JT, Arrach N, Alagely A, McClelland M, Teplitski M. Specific responses of Salmonella enterica to tomato varieties and fruit ripeness identified by in vivo expression technology. PLoS One. 2010 Aug 31; 5(8):e12406. PMID: 20824208; PMCID: PMC2930847.
    96. Libby SJ, Brehm MA, Greiner DL, Shultz LD, McClelland M, Smith KD, Cookson BT, Karlinsey JE, Kinkel TL, Porwollik S, Canals R, Cummings LA, Fang FC. Humanized nonobese diabetic-scid IL2rgammanull mice are susceptible to lethal Salmonella Typhi infection. Proc Natl Acad Sci U S A. 2010 Aug 31; 107(35):15589-94. PMID: 20713716; PMCID: PMC2932584.
    97. Wang Y, Xia XQ, Jia Z, Sawyers A, Yao H, Wang-Rodriquez J, Mercola D, McClelland M. In silico estimates of tissue components in surgical samples based on expression profiling data. Cancer Res. 2010 Aug 15; 70(16):6448-55. PMID: 20663908; PMCID: PMC4411177.
    98. Xia XQ, McClelland M, Wang Y. TabSQL: a MySQL tool to facilitate mapping user data to public databases. BMC Bioinformatics. 2010 Jun 23; 11:342. PMID: 20573251; PMCID: PMC2909216.
    99. Müller-Tidow C, Klein HU, Hascher A, Isken F, Tickenbrock L, Thoennissen N, Agrawal-Singh S, Tschanter P, Disselhoff C, Wang Y, Becker A, Thiede C, Ehninger G, zur Stadt U, Koschmieder S, Seidl M, Müller FU, Schmitz W, Schlenke P, McClelland M, Berdel WE, Dugas M, Serve H. Profiling of histone H3 lysine 9 trimethylation levels predicts transcription factor activity and survival in acute myeloid leukemia. Blood. 2010 Nov 04; 116(18):3564-71. PMID: 20498303; PMCID: PMC2981478.
    100. Xia XQ, Jia Z, Porwollik S, Long F, Hoemme C, Ye K, Müller-Tidow C, McClelland M, Wang Y. Evaluating oligonucleotide properties for DNA microarray probe design. Nucleic Acids Res. 2010 Jun; 38(11):e121. PMID: 20236987; PMCID: PMC2887943.
    101. Arrach N, Cheng P, Zhao M, Santiviago CA, Hoffman RM, McClelland M. High-throughput screening for salmonella avirulent mutants that retain targeting of solid tumors. Cancer Res. 2010 Mar 15; 70(6):2165-70. PMID: 20231149; PMCID: PMC4103738.
    102. Kucerova E, Clifton SW, Xia XQ, Long F, Porwollik S, Fulton L, Fronick C, Minx P, Kyung K, Warren W, Fulton R, Feng D, Wollam A, Shah N, Bhonagiri V, Nash WE, Hallsworth-Pepin K, Wilson RK, McClelland M, Forsythe SJ. Genome sequence of Cronobacter sakazakii BAA-894 and comparative genomic hybridization analysis with other Cronobacter species. PLoS One. 2010 Mar 08; 5(3):e9556. PMID: 20221447; PMCID: PMC2833190.
    103. Frye JG, Lindsey RL, Rondeau G, Porwollik S, Long F, McClelland M, Jackson CR, Englen MD, Meinersmann RJ, Berrang ME, Davis JA, Barrett JB, Turpin JB, Thitaram SN, Fedorka-Cray PJ. Development of a DNA microarray to detect antimicrobial resistance genes identified in the National Center for Biotechnology Information database. Microb Drug Resist. 2010 Mar; 16(1):9-19. PMID: 19916789; PMCID: PMC3116450.
    104. Santiviago CA, Blondel CJ, Quezada CP, Silva CA, Tobar PM, Porwollik S, McClelland M, Andrews-Polymenis HL, Toro CS, Zaldívar M, Contreras I. Spontaneous excision of the Salmonella enterica serovar Enteritidis-specific defective prophage-like element phiSE14. J Bacteriol. 2010 Apr; 192(8):2246-54. PMID: 20172996; PMCID: PMC2849447.
    105. Lee EJ, Mcclelland M, Wang Y, Long F, Choi SH, Lee JH. Distinct DNA methylation profiles between adenocarcinoma and squamous cell carcinoma of human uterine cervix. Oncol Res. 2010; 18(9):401-8. PMID: 20524398.
      View in: PubMed
    106. O'Regan E, Quinn T, Frye JG, Pagès JM, Porwollik S, Fedorka-Cray PJ, McClelland M, Fanning S. Fitness costs and stability of a high-level ciprofloxacin resistance phenotype in Salmonella enterica serotype enteritidis: reduced infectivity associated with decreased expression of Salmonella pathogenicity island 1 genes. Antimicrob Agents Chemother. 2010 Jan; 54(1):367-74. PMID: 19917752; PMCID: PMC2798541.
    107. Wang Y, McClelland M, Xia XQ. Analyzing microarray data using WebArray. Cold Spring Harb Protoc. 2009 Aug; 2009(8):pdb.prot5260. PMID: 20147236.
      View in: PubMed
    108. Xia XQ, McClelland M, Porwollik S, Song W, Cong X, Wang Y. WebArrayDB: cross-platform microarray data analysis and public data repository. Bioinformatics. 2009 Sep 15; 25(18):2425-9. PMID: 19602526; PMCID: PMC2735672.
    109. Santiviago CA, Reynolds MM, Porwollik S, Choi SH, Long F, Andrews-Polymenis HL, McClelland M. Analysis of pools of targeted Salmonella deletion mutants identifies novel genes affecting fitness during competitive infection in mice. PLoS Pathog. 2009 Jul; 5(7):e1000477. PMID: 19578432; PMCID: PMC2698986.
    110. Andrews-Polymenis HL, Santiviago CA, McClelland M. Novel genetic tools for studying food-borne Salmonella. Curr Opin Biotechnol. 2009 Apr; 20(2):149-57. PMID: 19285855; PMCID: PMC2762399.
    111. Ansong C, Yoon H, Porwollik S, Mottaz-Brewer H, Petritis BO, Jaitly N, Adkins JN, McClelland M, Heffron F, Smith RD. Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation. PLoS One. 2009; 4(3):e4809. PMID: 19277208; PMCID: PMC2652828.
    112. Merighi M, Septer AN, Carroll-Portillo A, Bhatiya A, Porwollik S, McClelland M, Gunn JS. Genome-wide analysis of the PreA/PreB (QseB/QseC) regulon of Salmonella enterica serovar Typhimurium. BMC Microbiol. 2009 Feb 23; 9:42. PMID: 19236707; PMCID: PMC2653508.
    113. Yoon H, McDermott JE, Porwollik S, McClelland M, Heffron F. Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium. PLoS Pathog. 2009 Feb; 5(2):e1000306. PMID: 19229334; PMCID: PMC2639726.
    114. Wilson JW, Ott CM, Quick L, Davis R, Höner zu Bentrup K, Crabbé A, Richter E, Sarker S, Barrila J, Porwollik S, Cheng P, McClelland M, Tsaprailis G, Radabaugh T, Hunt A, Shah M, Nelman-Gonzalez M, Hing S, Parra M, Dumars P, Norwood K, Bober R, Devich J, Ruggles A, CdeBaca A, Narayan S, Benjamin J, Goulart C, Rupert M, Catella L, Schurr MJ, Buchanan K, Morici L, McCracken J, Porter MD, Pierson DL, Smith SM, Mergeay M, Leys N, Stefanyshyn-Piper HM, Gorie D, Nickerson CA. Media ion composition controls regulatory and virulence response of Salmonella in spaceflight. PLoS One. 2008; 3(12):e3923. PMID: 19079590; PMCID: PMC2592540.
    115. Arora S, Wang Y, Jia Z, Vardar-Sengul S, Munawar A, Doctor KS, Birrer M, McClelland M, Adamson E, Mercola D. Egr1 regulates the coordinated expression of numerous EGF receptor target genes as identified by ChIP-on-chip. Genome Biol. 2008; 9(11):R166. PMID: 19032775; PMCID: PMC2614498.
    116. Papp-Wallace KM, Nartea M, Kehres DG, Porwollik S, McClelland M, Libby SJ, Fang FC, Maguire ME. The CorA Mg2+ channel is required for the virulence of Salmonella enterica serovar typhimurium. J Bacteriol. 2008 Oct; 190(19):6517-23. PMID: 18676664; PMCID: PMC2566004.
    117. Koziol JA, Feng AC, Jia Z, Wang Y, Goodison S, McClelland M, Mercola D. The wisdom of the commons: ensemble tree classifiers for prostate cancer prognosis. Bioinformatics. 2009 Jan 01; 25(1):54-60. PMID: 18628288; PMCID: PMC2638928.
    118. Arrach N, Zhao M, Porwollik S, Hoffman RM, McClelland M. Salmonella promoters preferentially activated inside tumors. Cancer Res. 2008 Jun 15; 68(12):4827-32. PMID: 18559530.
      View in: PubMed
    119. Arrach N, Porwollik S, Cheng P, Cho A, Long F, Choi SH, McClelland M. Salmonella serovar identification using PCR-based detection of gene presence and absence. J Clin Microbiol. 2008 Aug; 46(8):2581-9. PMID: 18524964; PMCID: PMC2519459.
    120. Scaria J, Palaniappan RU, Chiu D, Phan JA, Ponnala L, McDonough P, Grohn YT, Porwollik S, McClelland M, Chiou CS, Chu C, Chang YF. Microarray for molecular typing of Salmonella enterica serovars. Mol Cell Probes. 2008 Aug; 22(4):238-43. PMID: 18554865; PMCID: PMC2766089.
    121. Bourret TJ, Porwollik S, McClelland M, Zhao R, Greco T, Ischiropoulos H, Vázquez-Torres A. Nitric oxide antagonizes the acid tolerance response that protects Salmonella against innate gastric defenses. PLoS One. 2008 Mar 19; 3(3):e1833. PMID: 18350168; PMCID: PMC2266805.
    122. Hoemme C, Peerzada A, Behre G, Wang Y, McClelland M, Nieselt K, Zschunke M, Disselhoff C, Agrawal S, Isken F, Tidow N, Berdel WE, Serve H, Müller-Tidow C. Chromatin modifications induced by PML-RARalpha repress critical targets in leukemogenesis as analyzed by ChIP-Chip. Blood. 2008 Mar 01; 111(5):2887-95. PMID: 18024792; PMCID: PMC2254548.
    123. Ward WO, Swartz CD, Porwollik S, Warren SH, Hanley NM, Knapp GW, McClelland M, DeMarini DM. Toxicogenomic analysis incorporating operon-transcriptional coupling and toxicant concentration-expression response: analysis of MX-treated Salmonella. BMC Bioinformatics. 2007 Oct 09; 8:378. PMID: 17925033; PMCID: PMC2225428.
    124. Wang Q, Zhao Y, McClelland M, Harshey RM. The RcsCDB signaling system and swarming motility in Salmonella enterica serovar typhimurium: dual regulation of flagellar and SPI-2 virulence genes. J Bacteriol. 2007 Dec; 189(23):8447-57. PMID: 17905992; PMCID: PMC2168921.
    125. Manna D, Porwollik S, McClelland M, Tan R, Higgins NP. Microarray analysis of Mu transposition in Salmonella enterica, serovar Typhimurium: transposon exclusion by high-density DNA binding proteins. Mol Microbiol. 2007 Oct; 66(2):315-28. PMID: 17850262.
      View in: PubMed
    126. Thijs IM, De Keersmaecker SC, Fadda A, Engelen K, Zhao H, McClelland M, Marchal K, Vanderleyden J. Delineation of the Salmonella enterica serovar Typhimurium HilA regulon through genome-wide location and transcript analysis. J Bacteriol. 2007 Jul; 189(13):4587-96. PMID: 17483226; PMCID: PMC1913449.
    127. Fink RC, Evans MR, Porwollik S, Vazquez-Torres A, Jones-Carson J, Troxell B, Libby SJ, McClelland M, Hassan HM. FNR is a global regulator of virulence and anaerobic metabolism in Salmonella enterica serovar Typhimurium (ATCC 14028s). J Bacteriol. 2007 Mar; 189(6):2262-73. PMID: 17220229; PMCID: PMC1899381.
    128. Porwollik S, McClelland M. Determination of the gene content of Salmonella genomes by microarray analysis. Methods Mol Biol. 2007; 394:89-103. PMID: 18363233.
      View in: PubMed
    129. Aguirre A, Cabeza ML, Spinelli SV, McClelland M, García Véscovi E, Soncini FC. PhoP-induced genes within Salmonella pathogenicity island 1. J Bacteriol. 2006 Oct; 188(19):6889-98. PMID: 16980492; PMCID: PMC1595516.
    130. Faucher SP, Porwollik S, Dozois CM, McClelland M, Daigle F. [Salmonella transcriptome during macrophage infection]. Med Sci (Paris). 2006 Oct; 22(10):792-3. PMID: 17026919.
      View in: PubMed
    131. Wang Q, Mariconda S, Suzuki A, McClelland M, Harshey RM. Uncovering a large set of genes that affect surface motility in Salmonella enterica serovar Typhimurium. J Bacteriol. 2006 Nov; 188(22):7981-4. PMID: 16980469; PMCID: PMC1636317.
    132. Kang MS, Besser TE, Hancock DD, Porwollik S, McClelland M, Call DR. Identification of specific gene sequences conserved in contemporary epidemic strains of Salmonella enterica. Appl Environ Microbiol. 2006 Nov; 72(11):6938-47. PMID: 16963552; PMCID: PMC1636165.
    133. Navarre WW, Porwollik S, Wang Y, McClelland M, Rosen H, Libby SJ, Fang FC. Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella. Science. 2006 Jul 14; 313(5784):236-8. PMID: 16763111.
      View in: PubMed
    134. Ledeboer NA, Frye JG, McClelland M, Jones BD. Salmonella enterica serovar Typhimurium requires the Lpf, Pef, and Tafi fimbriae for biofilm formation on HEp-2 tissue culture cells and chicken intestinal epithelium. Infect Immun. 2006 Jun; 74(6):3156-69. PMID: 16714543; PMCID: PMC1479237.
    135. Frye J, Karlinsey JE, Felise HR, Marzolf B, Dowidar N, McClelland M, Hughes KT. Identification of new flagellar genes of Salmonella enterica serovar Typhimurium. J Bacteriol. 2006 Mar; 188(6):2233-43. PMID: 16513753; PMCID: PMC1428135.
    136. Faucher SP, Porwollik S, Dozois CM, McClelland M, Daigle F. Transcriptome of Salmonella enterica serovar Typhi within macrophages revealed through the selective capture of transcribed sequences. Proc Natl Acad Sci U S A. 2006 Feb 07; 103(6):1906-11. PMID: 16443683; PMCID: PMC1413645.
    137. Frye JG, Jesse T, Long F, Rondeau G, Porwollik S, McClelland M, Jackson CR, Englen M, Fedorka-Cray PJ. DNA microarray detection of antimicrobial resistance genes in diverse bacteria. Int J Antimicrob Agents. 2006 Feb; 27(2):138-51. PMID: 16427254.
      View in: PubMed
    138. Spence J, Duggan BM, Eckhardt C, McClelland M, Mercola D. Messenger RNAs under differential translational control in Ki-ras-transformed cells. Mol Cancer Res. 2006 Jan; 4(1):47-60. PMID: 16446406.
      View in: PubMed
    139. Xia X, McClelland M, Wang Y. WebArray: an online platform for microarray data analysis. BMC Bioinformatics. 2005 Dec 21; 6:306. PMID: 16371165; PMCID: PMC1327694.
    140. Wang Y, Hayakawa J, Long F, Yu Q, Cho AH, Rondeau G, Welsh J, Mittal S, De Belle I, Adamson E, McClelland M, Mercola D. "Promoter array" studies identify cohorts of genes directly regulated by methylation, copy number change, or transcription factor binding in human cancer cells. Ann N Y Acad Sci. 2005 Nov; 1058:162-85. PMID: 16394135.
      View in: PubMed
    141. Morales CA, Porwollik S, Frye JG, Kinde H, McClelland M, Guard-Bouldin J. Correlation of phenotype with the genotype of egg-contaminating Salmonella enterica serovar Enteritidis. Appl Environ Microbiol. 2005 Aug; 71(8):4388-99. PMID: 16085829; PMCID: PMC1183325.
    142. Wang Y, Yu Q, Cho AH, Rondeau G, Welsh J, Adamson E, Mercola D, McClelland M. Survey of differentially methylated promoters in prostate cancer cell lines. Neoplasia. 2005 Aug; 7(8):748-60. PMID: 16207477; PMCID: PMC1501885.
    143. Rondeau G, McClelland M, Nguyen T, Risques R, Wang Y, Judex M, Cho AH, Welsh J. Enhanced microarray performance using low complexity representations of the transcriptome. Nucleic Acids Res. 2005 Jun 24; 33(11):e100. PMID: 15987785; PMCID: PMC1159120.
    144. Bang IS, Frye JG, McClelland M, Velayudhan J, Fang FC. Alternative sigma factor interactions in Salmonella: sigma and sigma promote antioxidant defences by enhancing sigma levels. Mol Microbiol. 2005 May; 56(3):811-23. PMID: 15819634.
      View in: PubMed
    145. Navarre WW, Halsey TA, Walthers D, Frye J, McClelland M, Potter JL, Kenney LJ, Gunn JS, Fang FC, Libby SJ. Co-regulation of Salmonella enterica genes required for virulence and resistance to antimicrobial peptides by SlyA and PhoP/PhoQ. Mol Microbiol. 2005 Apr; 56(2):492-508. PMID: 15813739.
      View in: PubMed
    146. Frye JG, Porwollik S, Blackmer F, Cheng P, McClelland M. Host gene expression changes and DNA amplification during temperate phage induction. J Bacteriol. 2005 Feb; 187(4):1485-92. PMID: 15687213; PMCID: PMC545606.
    147. Helm RA, Porwollik S, Stanley AE, Maloy S, McClelland M, Rabsch W, Eisenstark A. Pigeon-associated strains of Salmonella enterica serovar Typhimurium phage type DT2 have genomic rearrangements at rRNA operons. Infect Immun. 2004 Dec; 72(12):7338-41. PMID: 15557664; PMCID: PMC529114.
    148. Hayakawa J, Mittal S, Wang Y, Korkmaz KS, Adamson E, English C, Ohmichi M, Omichi M, McClelland M, Mercola D. Identification of promoters bound by c-Jun/ATF2 during rapid large-scale gene activation following genotoxic stress. Mol Cell. 2004 Nov 19; 16(4):521-35. PMID: 15546613.
      View in: PubMed
    149. McClelland M, Sanderson KE, Clifton SW, Latreille P, Porwollik S, Sabo A, Meyer R, Bieri T, Ozersky P, McLellan M, Harkins CR, Wang C, Nguyen C, Berghoff A, Elliott G, Kohlberg S, Strong C, Du F, Carter J, Kremizki C, Layman D, Leonard S, Sun H, Fulton L, Nash W, Miner T, Minx P, Delehaunty K, Fronick C, Magrini V, Nhan M, Warren W, Florea L, Spieth J, Wilson RK. Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid. Nat Genet. 2004 Dec; 36(12):1268-74. PMID: 15531882.
      View in: PubMed
    150. Nair S, Alokam S, Kothapalli S, Porwollik S, Proctor E, Choy C, McClelland M, Liu SL, Sanderson KE. Salmonella enterica serovar Typhi strains from which SPI7, a 134-kilobase island with genes for Vi exopolysaccharide and other functions, has been deleted. J Bacteriol. 2004 May; 186(10):3214-23. PMID: 15126484; PMCID: PMC400635.
    151. Cuadros C, Lopez-Hernandez FJ, Dominguez AL, McClelland M, Lustgarten J. Flagellin fusion proteins as adjuvants or vaccines induce specific immune responses. Infect Immun. 2004 May; 72(5):2810-6. PMID: 15102791; PMCID: PMC387897.
    152. Andrews-Polymenis HL, Rabsch W, Porwollik S, McClelland M, Rosetti C, Adams LG, Bäumler AJ. Host restriction of Salmonella enterica serotype Typhimurium pigeon isolates does not correlate with loss of discrete genes. J Bacteriol. 2004 May; 186(9):2619-28. PMID: 15090502; PMCID: PMC387805.
    153. Wang Q, Frye JG, McClelland M, Harshey RM. Gene expression patterns during swarming in Salmonella typhimurium: genes specific to surface growth and putative new motility and pathogenicity genes. Mol Microbiol. 2004 Apr; 52(1):169-87. PMID: 15049819.
      View in: PubMed
    154. Porwollik S, Wong RM, Helm RA, Edwards KK, Calcutt M, Eisenstark A, McClelland M. DNA amplification and rearrangements in archival Salmonella enterica serovar Typhimurium LT2 cultures. J Bacteriol. 2004 Mar; 186(6):1678-82. PMID: 14996798; PMCID: PMC355959.
    155. Stuart RO, Wachsman W, Berry CC, Wang-Rodriguez J, Wasserman L, Klacansky I, Masys D, Arden K, Goodison S, McClelland M, Wang Y, Sawyers A, Kalcheva I, Tarin D, Mercola D. In silico dissection of cell-type-associated patterns of gene expression in prostate cancer. Proc Natl Acad Sci U S A. 2004 Jan 13; 101(2):615-20. PMID: 14722351; PMCID: PMC327196.
    156. Alvarez J, Porwollik S, Laconcha I, Gisakis V, Vivanco AB, Gonzalez I, Echenagusia S, Zabala N, Blackmer F, McClelland M, Rementeria A, Garaizar J. Detection of a Salmonella enterica serovar California strain spreading in spanish feed mills and genetic characterization with DNA microarrays. Appl Environ Microbiol. 2003 Dec; 69(12):7531-4. PMID: 14660409; PMCID: PMC309902.
    157. Adamson E, de Belle I, Mittal S, Wang Y, Hayakawa J, Korkmaz K, O'Hagan D, McClelland M, Mercola D. Egr1 signaling in prostate cancer. Cancer Biol Ther. 2003 Nov-Dec; 2(6):617-22. PMID: 14688464.
      View in: PubMed
    158. Bader MW, Navarre WW, Shiau W, Nikaido H, Frye JG, McClelland M, Fang FC, Miller SI. Regulation of Salmonella typhimurium virulence gene expression by cationic antimicrobial peptides. Mol Microbiol. 2003 Oct; 50(1):219-30. PMID: 14507376.
      View in: PubMed
    159. Porwollik S, McClelland M. Lateral gene transfer in Salmonella. Microbes Infect. 2003 Sep; 5(11):977-89. PMID: 12941390.
      View in: PubMed
    160. Lawhon SD, Frye JG, Suyemoto M, Porwollik S, McClelland M, Altier C. Global regulation by CsrA in Salmonella typhimurium. Mol Microbiol. 2003 Jun; 48(6):1633-45. PMID: 12791144.
      View in: PubMed
    161. Porwollik S, Frye J, Florea LD, Blackmer F, McClelland M. A non-redundant microarray of genes for two related bacteria. Nucleic Acids Res. 2003 Apr 01; 31(7):1869-76. PMID: 12655003; PMCID: PMC152813.
    162. Ringquist S, Rondeau G, Risques RA, Higashiyama T, Wang YP, Porwollik S, Boyle D, McClelland M, Welsh J. Microarray analysis using RNA arbitrarily primed PCR. Methods Mol Biol. 2003; 226:245-54. PMID: 12958507.
      View in: PubMed
    163. Wilson JW, Ott CM, Ramamurthy R, Porwollik S, McClelland M, Pierson DL, Nickerson CA. Low-Shear modeled microgravity alters the Salmonella enterica serovar typhimurium stress response in an RpoS-independent manner. Appl Environ Microbiol. 2002 Nov; 68(11):5408-16. PMID: 12406731; PMCID: PMC129924.
    164. Wilson JW, Ramamurthy R, Porwollik S, McClelland M, Hammond T, Allen P, Ott CM, Pierson DL, Nickerson CA. Microarray analysis identifies Salmonella genes belonging to the low-shear modeled microgravity regulon. Proc Natl Acad Sci U S A. 2002 Oct 15; 99(21):13807-12. PMID: 12370447; PMCID: PMC129779.
    165. Porwollik S, Wong RM, McClelland M. Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis. Proc Natl Acad Sci U S A. 2002 Jun 25; 99(13):8956-61. PMID: 12072558; PMCID: PMC124405.
    166. Garaizar J, Porwollik S, Echeita A, Rementeria A, Herrera S, Wong RM, Frye J, Usera MA, McClelland M. DNA microarray-based typing of an atypical monophasic Salmonella enterica serovar. J Clin Microbiol. 2002 Jun; 40(6):2074-8. PMID: 12037067; PMCID: PMC130817.