Evgeny Kvon

Title(s)Assistant Professor, Developmental & Cell Biology
SchoolSchool of Biological Sciences
AddressZot 2300
Irvine CA 92697
ORCID ORCID Icon0000-0002-1562-0945 Additional info
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Author Correction: DNA-guided transcription factor interactions extend human gene regulatory code. Nature. 2025 Jun 03. Xie Z, Sokolov I, Osmala M, Yue X, Bower G, Pett JP, Chen Y, Wang K, Cavga AD, Popov A, Teichmann SA, Morgunova E, Kvon EZ, Yin Y, Taipale J. PMID: 40461788.
      View in: PubMed   Mentions:
    2. DNA-guided transcription factor interactions extend human gene regulatory code. Nature. 2025 Apr 09. Xie Z, Sokolov I, Osmala M, Yue X, Bower G, Pett JP, Chen Y, Wang K, Cavga AD, Popov A, Teichmann SA, Morgunova E, Kvon EZ, Yin Y, Taipale J. PMID: 40205063.
      View in: PubMed   Mentions:    Fields:    
    3. ChromBPNet: bias factorized, base-resolution deep learning models of chromatin accessibility reveal cis-regulatory sequence syntax, transcription factor footprints and regulatory variants. bioRxiv. 2025 Jan 08. Pampari A, Shcherbina A, Kvon EZ, Kosicki M, Nair S, Kundu S, Kathiria AS, Risca VI, Kuningas K, Alasoo K, Greenleaf WJ, Pennacchio LA, Kundaje A. PMID: 39829783; PMCID: PMC11741299.
      View in: PubMed   Mentions:
    4. Rapid and quantitative functional interrogation of human enhancer variant activity in live mice. Nat Commun. 2025 Jan 06; 16(1):409. Hollingsworth EW, Liu TA, Alcantara JA, Chen CX, Jacinto SH, Kvon EZ. PMID: 39762235; PMCID: PMC11704014.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    5. Genetic factors mediating long-range enhancer-promoter communication in mammalian development. Curr Opin Genet Dev. 2025 Feb; 90:102282. Bower G, Kvon EZ. PMID: 39579740.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    6. The genomes of all lungfish inform on genome expansion and tetrapod evolution. Nature. 2024 Oct; 634(8032):96-103. Schartl M, Woltering JM, Irisarri I, Du K, Kneitz S, Pippel M, Brown T, Franchini P, Li J, Li M, Adolfi M, Winkler S, de Freitas Sousa J, Chen Z, Jacinto S, Kvon EZ, Correa de Oliveira LR, Monteiro E, Baia Amaral D, Burmester T, Chalopin D, Suh A, Myers E, Simakov O, Schneider I, Meyer A. PMID: 39143221; PMCID: PMC11514621.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    7. Conserved Cis-Acting Range Extender Element Mediates Extreme Long-Range Enhancer Activity in Mammals. bioRxiv. 2024 May 26. Bower G, Hollingsworth EW, Jacinto S, Clock B, Cao K, Liu M, Dziulko A, Alcaina-Caro A, Xu Q, Skowronska-Krawczyk D, Lopez-Rios J, Dickel DE, Bardet AF, Pennacchio LA, Visel A, Kvon EZ. PMID: 38826394; PMCID: PMC11142232.
      View in: PubMed   Mentions:
    8. Emx2 underlies the development and evolution of marsupial gliding membranes. Nature. 2024 May; 629(8010):127-135. Moreno JA, Dudchenko O, Feigin CY, Mereby SA, Chen Z, Ramos R, Almet AA, Sen H, Brack BJ, Johnson MR, Li S, Wang W, Gaska JM, Ploss A, Weisz D, Omer AD, Yao W, Colaric Z, Kaur P, Leger JS, Nie Q, Mena A, Flanagan JP, Keller G, Sanger T, Ostrow B, Plikus MV, Kvon EZ, Aiden EL, Mallarino R. PMID: 38658750; PMCID: PMC11062917.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    9. Increased enhancer-promoter interactions during developmental enhancer activation in mammals. Nat Genet. 2024 Apr; 56(4):675-685. Chen Z, Snetkova V, Bower G, Jacinto S, Clock B, Dizehchi A, Barozzi I, Mannion BJ, Alcaina-Caro A, Lopez-Rios J, Dickel DE, Visel A, Pennacchio LA, Kvon EZ. PMID: 38509385; PMCID: PMC11203181.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    10. Rapid and Quantitative Functional Interrogation of Human Enhancer Variant Activity in Live Mice. bioRxiv. 2023 Dec 10. Hollingsworth EW, Liu TA, Jacinto SH, Chen CX, Alcantara JA, Kvon EZ. PMID: 38105996; PMCID: PMC10723448.
      View in: PubMed   Mentions:
    11. A noncoding single-nucleotide polymorphism at 8q24 drives IDH1-mutant glioma formation. Science. 2022 10 07; 378(6615):68-78. Yanchus C, Drucker KL, Kollmeyer TM, Tsai R, Winick-Ng W, Liang M, Malik A, Pawling J, De Lorenzo SB, Ali A, Decker PA, Kosel ML, Panda A, Al-Zahrani KN, Jiang L, Browning JWL, Lowden C, Geuenich M, Hernandez JJ, Gosio JT, Ahmed M, Loganathan SK, Berman J, Trcka D, Michealraj KA, Fortin J, Carson B, Hollingsworth EW, Jacinto S, Mazrooei P, Zhou L, Elia A, Lupien M, He HH, Murphy DJ, Wang L, Abyzov A, Dennis JW, Maass PG, Campbell K, Wilson MD, Lachance DH, Wrensch M, Wiencke J, Mak T, Pennacchio LA, Dickel DE, Visel A, Wrana J, Taylor MD, Zadeh G, Dirks P, Eckel-Passow JE, Attisano L, Pombo A, Ida CM, Kvon EZ, Jenkins RB, Schramek D. PMID: 36201590; PMCID: PMC9926876.
      View in: PubMed   Mentions: 24     Fields:    
    12. Characterization of Mammalian In Vivo Enhancers Using Mouse Transgenesis and CRISPR Genome Editing. Methods Mol Biol. 2022; 2403:147-186. Osterwalder M, Tran S, Hunter RD, Meky EM, von Maydell K, Harrington AN, Godoy J, Novak CS, Plajzer-Frick I, Zhu Y, Akiyama JA, Afzal V, Kvon EZ, Pennacchio LA, Dickel DE, Visel A. PMID: 34913122.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    13. Ultraconserved enhancer function does not require perfect sequence conservation. Nat Genet. 2021 04; 53(4):521-528. Snetkova V, Ypsilanti AR, Akiyama JA, Mannion BJ, Plajzer-Frick I, Novak CS, Harrington AN, Pham QT, Kato M, Zhu Y, Godoy J, Meky E, Hunter RD, Shi M, Kvon EZ, Afzal V, Tran S, Rubenstein JLR, Visel A, Pennacchio LA, Dickel DE. PMID: 33782603; PMCID: PMC8038972.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansAnimalsCells
    14. Enhancer redundancy in development and disease. Nat Rev Genet. 2021 05; 22(5):324-336. Kvon EZ, Waymack R, Gad M, Wunderlich Z. PMID: 33442000; PMCID: PMC8068586.
      View in: PubMed   Mentions: 97     Fields:    Translation:HumansAnimalsCells
    15. Presynaptic Homeostasis Opposes Disease Progression in Mouse Models of ALS-Like Degeneration: Evidence for Homeostatic Neuroprotection. Neuron. 2020 07 08; 107(1):95-111.e6. Orr BO, Hauswirth AG, Celona B, Fetter RD, Zunino G, Kvon EZ, Zhu Y, Pennacchio LA, Black BL, Davis GW. PMID: 32380032; PMCID: PMC7529479.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    16. Comprehensive In Vivo Interrogation Reveals Phenotypic Impact of Human Enhancer Variants. Cell. 2020 03 19; 180(6):1262-1271.e15. Kvon EZ, Zhu Y, Kelman G, Novak CS, Plajzer-Frick I, Kato M, Garvin TH, Pham Q, Harrington AN, Hunter RD, Godoy J, Meky EM, Akiyama JA, Afzal V, Tran S, Escande F, Gilbert-Dussardier B, Jean-Marçais N, Hudaiberdiev S, Ovcharenko I, Dobbs MB, Gurnett CA, Manouvrier-Hanu S, Petit F, Visel A, Dickel DE, Pennacchio LA. PMID: 32169219; PMCID: PMC7179509.
      View in: PubMed   Mentions: 69     Fields:    Translation:HumansAnimalsCells
    17. Stable enhancers are active in development, and fragile enhancers are associated with evolutionary adaptation. Genome Biol. 2019 07 15; 20(1):140. Li S, Kvon EZ, Visel A, Pennacchio LA, Ovcharenko I. PMID: 31307522; PMCID: PMC6631995.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    18. Progressive Loss of Function in a Limb Enhancer during Snake Evolution. Cell. 2016 Oct 20; 167(3):633-642.e11. Kvon EZ, Kamneva OK, Melo US, Barozzi I, Osterwalder M, Mannion BJ, Tissières V, Pickle CS, Plajzer-Frick I, Lee EA, Kato M, Garvin TH, Akiyama JA, Afzal V, Lopez-Rios J, Rubin EM, Dickel DE, Pennacchio LA, Visel A. PMID: 27768887; PMCID: PMC5484524.
      View in: PubMed   Mentions: 147     Fields:    Translation:AnimalsCells
    19. An Evolutionary Conserved Epigenetic Mark of Polycomb Response Elements Implemented by Trx/MLL/COMPASS. Mol Cell. 2016 07 21; 63(2):318-328. Rickels R, Hu D, Collings CK, Woodfin AR, Piunti A, Mohan M, Herz HM, Kvon E, Shilatifard A. PMID: 27447986; PMCID: PMC4996622.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansAnimalsCells
    20. Using transgenic reporter assays to functionally characterize enhancers in animals. Genomics. 2015 Sep; 106(3):185-192. Kvon EZ. PMID: 26072435.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    21. Genome-scale functional characterization of Drosophila developmental enhancers in vivo. Nature. 2014 Aug 07; 512(7512):91-5. Kvon EZ, Kazmar T, Stampfel G, Yáñez-Cuna JO, Pagani M, Schernhuber K, Dickson BJ, Stark A. PMID: 24896182.
      View in: PubMed   Mentions: 214     Fields:    Translation:AnimalsCells
    22. Deciphering the transcriptional cis-regulatory code. Trends Genet. 2013 Jan; 29(1):11-22. Yáñez-Cuna JO, Kvon EZ, Stark A. PMID: 23102583.
      View in: PubMed   Mentions: 63     Fields:    Translation:HumansAnimalsCells
    23. Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding. Genome Res. 2012 Oct; 22(10):2018-30. Yáñez-Cuna JO, Dinh HQ, Kvon EZ, Shlyueva D, Stark A. PMID: 22534400; PMCID: PMC3460196.
      View in: PubMed   Mentions: 67     Fields:    
    24. HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature. Genes Dev. 2012 May 01; 26(9):908-13. Kvon EZ, Stampfel G, Yáñez-Cuna JO, Dickson BJ, Stark A. PMID: 22499593; PMCID: PMC3347788.
      View in: PubMed   Mentions: 67     Fields:    
    25. [Chromatin decompaction in the interbands of Drosophila polytene chromosomes does not correlate with high transcription level]. Genetika. 2011 Jun; 47(6):765-73. Kvon EZ, Demakov SA, Zhimulev IF. PMID: 21866857.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    26. [Functional organization of interbands in Drosophila polytene chromosomes]. Genetika. 2010 Oct; 46(10):1421-3. Demakov SA, Andreenkov OV, Berkaeva MB, Vatolina TIu, Volkova EI, Kvon EZ, Semeshin VF, Zhimulev IF. PMID: 21254569.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    27. Gene density profile reveals the marking of late replicated domains in the Drosophila melanogaster genome. Chromosoma. 2010 Dec; 119(6):589-600. Belyakin SN, Babenko VN, Maksimov DA, Shloma VV, Kvon EZ, Belyaeva ES, Zhimulev IF. PMID: 20602235.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
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