Vasan Venugopalan

Title(s)Professor & Chair, Chemical & Biomolecular Engineering
SchoolSamueli School of Engineering
Address916 Engineering Tower
Zot 2575
Irvine CA 92697
Phone(949) 824-6412
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    Collapse Research 
    Collapse Research Activities and Funding
    A Biophotonics Platform for Mechanotransduction and Metabolic Microscopy
    NIH R01GM129426Jun 1, 2019 - Mar 31, 2023
    Role: Principal Investigator
    Adaptive optics modeling in nonlinear microscopy to improve deep tissue imaging
    NIH R21GM128135May 4, 2018 - Mar 31, 2021
    Role: Principal Investigator
    Interactive Training in Emergency Operations for the Response Community
    NIH R44ES025448May 11, 2015 - Apr 30, 2020
    Role: Principal Investigator
    A National Short Course in Computational Biophotonics
    NIH R25GM103818Jan 1, 2013 - Dec 31, 2018
    Role: Principal Investigator
    Versatile system to select and expand individual or multiple adherent-type cells
    NIH R43RR025980May 1, 2009 - Apr 30, 2011
    Role: Principal Investigator
    An automated platform for kinase assays on patient cells
    NIH R03TW007323Jul 1, 2005 - Jun 30, 2008
    Role: Principal Investigator
    Photon Migration for Measurement of Small Tissue Volumes
    NIH R01EB000345Jul 1, 2001 - Sep 30, 2007
    Role: Principal Investigator
    Photon Migration for Measurement of Small Tissue Volumes
    NIH R01CA092063Jul 1, 2001 - Jun 30, 2006
    Role: Principal Investigator
    IDENTIFICATION OF AN AIRWAY INHIBITORY TRANSMITTER
    NIH R23HL029710Jan 1, 1984 - Dec 31, 1986
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Analysis of relative error in perturbation Monte Carlo simulations of radiative transport. J Biomed Opt. 2023 06; 28(6):065001. Parsanasab M, Hayakawa C, Spanier J, Shen Y, Venugopalan V. PMID: 37293394; PMCID: PMC10245552.
      View in: PubMed   Mentions: 1     Fields:    
    2. Modeling nonlinear optical microscopy in scattering media, part I. Propagation from lens to focal volume: tutorial. J Opt Soc Am A Opt Image Sci Vis. 2023 May 01; 40(5):867-882. Ranasinghesagara JC, Potma EO, Venugopalan V. PMID: 37133184; PMCID: PMC10607893.
      View in: PubMed   Mentions: 1     Fields:    
    3. Modeling nonlinear optical microscopy in scattering media, part II. Radiation from focal volume to far-field: tutorial. J Opt Soc Am A Opt Image Sci Vis. 2023 May 01; 40(5):883-897. Ranasinghesagara JC, Potma EO, Venugopalan V. PMID: 37133185; PMCID: PMC10614565.
      View in: PubMed   Mentions: 1     Fields:    
    4. Radiance backscattered by a strongly scattering medium in the high spatial frequency limit. J Opt Soc Am A Opt Image Sci Vis. 2022 Jul 01; 39(7):1193-1201. Ilan B, Kim AD, Venugopalan V. PMID: 36215605.
      View in: PubMed   Mentions:    Fields:    
    5. MCCL: an open-source software application for Monte Carlo simulations of radiative transport. J Biomed Opt. 2022 04; 27(8). Hayakawa CK, Malenfant L, Ranasinghesagara J, Cuccia DJ, Spanier J, Venugopalan V. PMID: 35415991; PMCID: PMC9005200.
      View in: PubMed   Mentions: 5     Fields:    
    6. Corneal transparency and scleral opacity arises from the nanoarchitecture of the constituent collagen fibrils. Biomed Opt Express. 2022 Mar 01; 13(3):1485-1496. Tseng SH, Yang CY, Li JH, Jeng YM, Ranasinghesagara JC, Venugopalan V. PMID: 35414992; PMCID: PMC8973168.
      View in: PubMed   Mentions:
    7. Comparative analysis of discrete and continuous absorption weighting estimators used in Monte Carlo simulations of radiative transport in turbid media: erratum. J Opt Soc Am A Opt Image Sci Vis. 2021 May 01; 38(5):749. Hayakawa CK, Spanier J, Venugopalan V. PMID: 33983280.
      View in: PubMed   Mentions:    Fields:    
    8. Single-shot interferometric measurement of cavitation bubble dynamics. Opt Lett. 2021 Mar 15; 46(6):1409-1412. Wilson BG, Fan Z, Sreedasyam R, Botvinick EL, Venugopalan V. PMID: 33720199; PMCID: PMC9233925.
      View in: PubMed   Mentions: 1     Fields:    
    9. Laser cavitation rheology for measurement of elastic moduli and failure strain within hydrogels. Sci Rep. 2020 08 04; 10(1):13144. Luo JC, Ching H, Wilson BG, Mohraz A, Botvinick EL, Venugopalan V. PMID: 32753667; PMCID: PMC7403306.
      View in: PubMed   Mentions: 2     Fields:    
    10. Optical sampling depth in the spatial frequency domain. J Biomed Opt. 2019 07; 24(7). Hayakawa CK, Karrobi K, Pera V, Roblyer D, Venugopalan V. PMID: 30218504; PMCID: PMC6675966.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimals
    11. Recovery of layered tissue optical properties from spatial frequency-domain spectroscopy and a deterministic radiative transport solver. J Biomed Opt. 2018 11; 24(7):1-11. Horan ST, Gardner AR, Saager R, Durkin AJ, Venugopalan V. PMID: 30456934; PMCID: PMC6995875.
      View in: PubMed   Mentions: 4     Fields:    
    12. Optical sampling depth in the spatial frequency domain. J Biomed Opt. 2018 08; 23(8):1-14. Hayakawa CK, Karrobi K, Pera V, Roblyer D, Venugopalan V. PMID: 30141285.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    13. Effect of scattering on coherent anti-Stokes Raman scattering (CARS) signals. Opt Express. 2017 Apr 17; 25(8):8638-8652. Ranasinghesagara JC, De Vito G, Piazza V, Potma EO, Venugopalan V. PMID: 28437941; PMCID: PMC5462071.
      View in: PubMed   Mentions: 2     Fields:    
    14. Multi-scale silica structures for improved HIV-1 Capsid (p24) antigen detection. Analyst. 2016 Jun 20; 141(13):4181-8. Lin S, Hedde PN, Venugopalan V, Gratton E, Khine M. PMID: 27163263; PMCID: PMC4924925.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    15. Development of perturbation Monte Carlo methods for polarized light transport in a discrete particle scattering model. Biomed Opt Express. 2016 May 01; 7(5):2051-66. Nguyen J, Hayakawa CK, Mourant JR, Venugopalan V, Spanier J. PMID: 27231642; PMCID: PMC4871102.
      View in: PubMed   Mentions: 1  
    16. Differential pathlength factor informs evoked stimulus response in a mouse model of Alzheimer's disease. Neurophotonics. 2015 Oct; 2(4):045001. Lin AJ, Ponticorvo A, Durkin AJ, Venugopalan V, Choi B, Tromberg BJ. PMID: 26835482; PMCID: PMC4718154.
      View in: PubMed   Mentions: 4  
    17. High-throughput optical screening of cellular mechanotransduction. Nat Photonics. 2014 Sep 01; 8:710-715. Compton JL, Luo JC, Ma H, Botvinick E, Venugopalan V. PMID: 25309621; PMCID: PMC4189826.
      View in: PubMed   Mentions: 17  
    18. Low-density plasma formation in aqueous biological media using sub-nanosecond laser pulses. Appl Phys Lett. 2014 Aug 11; 105(6):063701. Genc SL, Ma H, Venugopalan V. PMID: 25278618; PMCID: PMC4144155.
      View in: PubMed   Mentions: 4  
    19. Rapid computation of the amplitude and phase of tightly focused optical fields distorted by scattering particles. J Opt Soc Am A Opt Image Sci Vis. 2014 Jul 01; 31(7):1520-30. Ranasinghesagara JC, Hayakawa CK, Davis MA, Dunn AK, Potma EO, Venugopalan V. PMID: 25121440; PMCID: PMC4213127.
      View in: PubMed   Mentions: 3     Fields:    
    20. Coupled forward-adjoint Monte Carlo simulation of spatial-angular light fields to determine optical sensitivity in turbid media. J Biomed Opt. 2014 Jun; 19(6):065003. Gardner AR, Hayakawa CK, Venugopalan V. PMID: 24972356; PMCID: PMC4073599.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    21. Time-resolved digital holographic microscopy of laser-induced forward transfer process. Appl Phys B. 2014 Mar 01; 114(3):361-366. Ma H, Venugopalan V. PMID: 24748724; PMCID: PMC3990434.
      View in: PubMed   Mentions:
    22. Comparative analysis of discrete and continuous absorption weighting estimators used in Monte Carlo simulations of radiative transport in turbid media. J Opt Soc Am A Opt Image Sci Vis. 2014 Feb 01; 31(2):301-11. Hayakawa CK, Spanier J, Venugopalan V. PMID: 24562029; PMCID: PMC4106716.
      View in: PubMed   Mentions: 12     Fields:    Translation:Cells
    23. Hydrodynamic determinants of cell necrosis and molecular delivery produced by pulsed laser microbeam irradiation of adherent cells. Biophys J. 2013 Nov 05; 105(9):2221-31. Compton JL, Hellman AN, Venugopalan V. PMID: 24209868; PMCID: PMC3824719.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    24. Radiative transport produced by oblique illumination of turbid media with collimated beams. Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Jun; 87(6):063308. Gardner AR, Kim AD, Venugopalan V. PMID: 23848807; PMCID: PMC3940417.
      View in: PubMed   Mentions: 3     Fields:    
    25. In vivo multiphoton NADH fluorescence reveals depth-dependent keratinocyte metabolism in human skin. Biophys J. 2013 Jan 08; 104(1):258-67. Balu M, Mazhar A, Hayakawa CK, Mittal R, Krasieva TB, König K, Venugopalan V, Tromberg BJ. PMID: 23332078; PMCID: PMC3540245.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansCellsCTClinical Trials
    26. Impact of release dynamics of laser-irradiated polymer micropallets on the viability of selected adherent cells. J R Soc Interface. 2012 Jun 07; 9(71):1156-67. Ma H, Mismar W, Wang Y, Small DW, Ras M, Allbritton NL, Sims CE, Venugopalan V. PMID: 22158840; PMCID: PMC3350736.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    27. Analysis of single Monte Carlo methods for prediction of reflectance from turbid media. Opt Express. 2011 Sep 26; 19(20):19627-42. Martinelli M, Gardner A, Cuccia D, Hayakawa C, Spanier J, Venugopalan V. PMID: 21996904; PMCID: PMC3347703.
      View in: PubMed   Mentions: 22     Fields:    
    28. Accurate and efficient Monte Carlo solutions to the radiative transport equation in the spatial frequency domain. Opt Lett. 2011 Jun 15; 36(12):2269-71. Gardner AR, Venugopalan V. PMID: 21685989; PMCID: PMC3312025.
      View in: PubMed   Mentions: 7     Fields:    
    29. Electric field Monte Carlo simulations of focal field distributions produced by tightly focused laser beams in tissues. Biomed Opt Express. 2011 Jan 06; 2(2):278-90. Hayakawa CK, Potma EO, Venugopalan V. PMID: 21339874; PMCID: PMC3039457.
      View in: PubMed   Mentions: 7  
    30. Examination of axonal injury and regeneration in micropatterned neuronal culture using pulsed laser microbeam dissection. Lab Chip. 2010 Aug 21; 10(16):2083-92. Hellman AN, Vahidi B, Kim HJ, Mismar W, Steward O, Jeon NL, Venugopalan V. PMID: 20532390; PMCID: PMC3380453.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansAnimalsCells
    31. Nonspherical laser-induced cavitation bubbles. Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Jan; 81(1 Pt 2):016308. Lim KY, Quinto-Su PA, Klaseboer E, Khoo BC, Venugopalan V, Ohl CD. PMID: 20365461.
      View in: PubMed   Mentions: 5     Fields:    
    32. Amplitude and phase of tightly focused laser beams in turbid media. Phys Rev Lett. 2009 Jul 24; 103(4):043903. Hayakawa CK, Venugopalan V, Krishnamachari VV, Potma EO. PMID: 19659354; PMCID: PMC2850562.
      View in: PubMed   Mentions: 9     Fields:    
    33. Characterization and use of laser-based lysis for cell analysis on-chip. J R Soc Interface. 2008 Oct 06; 5 Suppl 2:S113-21. Lai HH, Quinto-Su PA, Sims CE, Bachman M, Li GP, Venugopalan V, Allbritton NL. PMID: 18583277; PMCID: PMC2706033.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    34. Mechanisms of pulsed laser microbeam release of SU-8 polymer "micropallets" for the collection and separation of adherent cells. Anal Chem. 2008 Jun 15; 80(12):4675-9. Quinto-Su PA, To'a Salazar G, Sims CE, Allbritton NL, Venugopalan V. PMID: 18489124; PMCID: PMC2525502.
      View in: PubMed   Mentions: 13     Fields:    
    35. Biophysical response to pulsed laser microbeam-induced cell lysis and molecular delivery. J Biophotonics. 2008 Mar; 1(1):24-35. Hellman AN, Rau KR, Yoon HH, Venugopalan V. PMID: 19343632; PMCID: PMC3155384.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    36. Radiative transport in the delta-P1 approximation for semi-infinite turbid media. Med Phys. 2008 Feb; 35(2):681-93. Seo I, Hayakawa CK, Venugopalan V. PMID: 18383690; PMCID: PMC3509770.
      View in: PubMed   Mentions: 10     Fields:    
    37. Examination of laser microbeam cell lysis in a PDMS microfluidic channel using time-resolved imaging. Lab Chip. 2008 Mar; 8(3):408-14. Quinto-Su PA, Lai HH, Yoon HH, Sims CE, Allbritton NL, Venugopalan V. PMID: 18305858; PMCID: PMC2525503.
      View in: PubMed   Mentions: 34     Fields:    Translation:Cells
    38. Optoacoustic imaging based on the interferometric measurement of surface displacement. J Biomed Opt. 2007 Nov-Dec; 12(6):064001. Carp SA, Venugopalan V. PMID: 18163817.
      View in: PubMed   Mentions: 12     Fields:    Translation:Animals
    39. Laser-induced mixing in microfluidic channels. Anal Chem. 2007 Jun 15; 79(12):4484-92. Hellman AN, Rau KR, Yoon HH, Bae S, Palmer JF, Phillips KS, Allbritton NL, Venugopalan V. PMID: 17508715.
      View in: PubMed   Mentions: 29     Fields:    Translation:Cells
    40. Mechanisms of laser cellular microsurgery. Methods Cell Biol. 2007; 82:113-51. Quinto-Su PA, Venugopalan V. PMID: 17586256.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimals
    41. Perturbation and differential Monte Carlo methods for measurement of optical properties in a layered epithelial tissue model. J Biomed Opt. 2007 Jan-Feb; 12(1):014030. Seo I, You JS, Hayakawa CK, Venugopalan V. PMID: 17343505.
      View in: PubMed   Mentions: 14     Fields:    
    42. Estimating optical properties in layered tissues by use of the Born approximation of the radiative transport equation. Opt Lett. 2006 Apr 15; 31(8):1088-90. Kim AD, Hayakawa C, Venugopalan V. PMID: 16625912.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimals
    43. Pulsed laser microbeam-induced cell lysis: time-resolved imaging and analysis of hydrodynamic effects. Biophys J. 2006 Jul 01; 91(1):317-29. Rau KR, Quinto-Su PA, Hellman AN, Venugopalan V. PMID: 16617076; PMCID: PMC1479069.
      View in: PubMed   Mentions: 59     Fields:    Translation:AnimalsCells
    44. Mid-IR laser ablation of articular and fibro-cartilage: a wavelength dependence study of thermal injury and crater morphology. Lasers Surg Med. 2006 Mar; 38(3):218-28. Youn JI, Sweet P, Peavy GM, Venugopalan V. PMID: 16453331.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    45. Frequency domain photon migration in the delta- P1 approximation: analysis of ballistic, transport, and diffuse regimes. Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Aug; 72(2 Pt 1):021903. You JS, Hayakawa CK, Venugopalan V. PMID: 16196600.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    46. Free electron laser ablation of articular and fibro-cartilage at 2.79, 2.9, 6.1, and 6.45 microm: mass removal studies. Lasers Surg Med. 2005 Mar; 36(3):202-9. Youn JI, Peavy GM, Venugopalan V. PMID: 15704094.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    47. Controlled ablation of microtubules using a picosecond laser. Biophys J. 2004 Dec; 87(6):4203-12. Botvinick EL, Venugopalan V, Shah JV, Liaw LH, Berns MW. PMID: 15454403; PMCID: PMC1304929.
      View in: PubMed   Mentions: 33     Fields:    Translation:Cells
    48. Use of the delta-P1 approximation for recovery of optical absorption, scattering, and asymmetry coefficients in turbid media. Appl Opt. 2004 Aug 20; 43(24):4677-84. Hayakawa CK, Hill BY, You JS, Bevilacqua F, Spanier J, Venugopalan V. PMID: 15352392.
      View in: PubMed   Mentions: 5     Fields:    
    49. Sampling tissue volumes using frequency-domain photon migration. Phys Rev E Stat Nonlin Soft Matter Phys. 2004 May; 69(5 Pt 1):051908. Bevilacqua F, You JS, Hayakawa CK, Venugopalan V. PMID: 15244848.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    50. Radiative transport in the delta-P1 approximation: accuracy of fluence rate and optical penetration depth predictions in turbid semi-infinite media. J Biomed Opt. 2004 May-Jun; 9(3):632-47. Carp SA, Prahl SA, Venugopalan V. PMID: 15189103.
      View in: PubMed   Mentions: 27     Fields:    
    51. Optoacoustic tomography using time-resolved interferometric detection of surface displacement. J Biomed Opt. 2003 Apr; 8(2):273-80. Payne BP, Venugopalan V, Mikic BB, Nishioka NS. PMID: 12683854.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    52. Optoacoustic determination of optical attenuation depth using interferometric detection. J Biomed Opt. 2003 Apr; 8(2):264-72. Payne BP, Venugopalan V, Mikic BB, Nishioka NS. PMID: 12683853.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    53. Mechanisms of pulsed laser ablation of biological tissues. Chem Rev. 2003 Feb; 103(2):577-644. Vogel A, Venugopalan V. PMID: 12580643.
      View in: PubMed   Mentions: 280     Fields:    Translation:HumansAnimalsCells
    54. Role of laser-induced plasma formation in pulsed cellular microsurgery and micromanipulation. Phys Rev Lett. 2002 Feb 18; 88(7):078103. Venugopalan V, Guerra A, Nahen K, Vogel A. PMID: 11863944.
      View in: PubMed   Mentions: 48     Fields:    Translation:Cells
    55. Gene inactivation by multiphoton-targeted photochemistry. Proc Natl Acad Sci U S A. 2000 Aug 15; 97(17):9504-7. Berns MW, Wang Z, Dunn A, Wallace V, Venugopalan V. PMID: 10944219; PMCID: PMC16894.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    56. Chemometric analysis of frequency-domain photon migration data: quantitative measurements of optical properties and chromophore concentrations in multicomponent turbid media. Appl Opt. 2000 Apr 01; 39(10):1659-67. Berger AJ, Venugopalan V, Durkin AJ, Pham T, Tromberg BJ. PMID: 18345066.
      View in: PubMed   Mentions: 1     Fields:    
    57. Comparison of cortical bone ablations by using infrared laser wavelengths 2.9 to 9.2 microm. Lasers Surg Med. 1999; 25(5):421-34. Peavy GM, Reinisch L, Payne JT, Venugopalan V. PMID: 10602135.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    58. Non-invasive measurements of breast tissue optical properties using frequency-domain photon migration. Philos Trans R Soc Lond B Biol Sci. 1997 Jun 29; 352(1354):661-8. Tromberg BJ, Coquoz O, Fishkin JB, Pham T, Anderson ER, Butler J, Cahn M, Gross JD, Venugopalan V, Pham D. PMID: 9232853; PMCID: PMC1691955.
      View in: PubMed   Mentions: 39     Fields:    Translation:Humans
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