-
Analysis of relative error in perturbation Monte Carlo simulations of radiative transport. J Biomed Opt. 2023 06; 28(6):065001.
Parsanasab M, Hayakawa C, Spanier J, Shen Y, Venugopalan V. PMID: 37293394; PMCID: PMC10245552.
View in:
PubMed Mentions:
1 Fields:
-
Modeling nonlinear optical microscopy in scattering media, part I. Propagation from lens to focal volume: tutorial. J Opt Soc Am A Opt Image Sci Vis. 2023 May 01; 40(5):867-882.
Ranasinghesagara JC, Potma EO, Venugopalan V. PMID: 37133184; PMCID: PMC10607893.
View in:
PubMed Mentions:
1 Fields:
-
Modeling nonlinear optical microscopy in scattering media, part II. Radiation from focal volume to far-field: tutorial. J Opt Soc Am A Opt Image Sci Vis. 2023 May 01; 40(5):883-897.
Ranasinghesagara JC, Potma EO, Venugopalan V. PMID: 37133185; PMCID: PMC10614565.
View in:
PubMed Mentions:
1 Fields:
-
Radiance backscattered by a strongly scattering medium in the high spatial frequency limit. J Opt Soc Am A Opt Image Sci Vis. 2022 Jul 01; 39(7):1193-1201.
Ilan B, Kim AD, Venugopalan V. PMID: 36215605.
View in:
PubMed Mentions: Fields:
-
MCCL: an open-source software application for Monte Carlo simulations of radiative transport. J Biomed Opt. 2022 04; 27(8).
Hayakawa CK, Malenfant L, Ranasinghesagara J, Cuccia DJ, Spanier J, Venugopalan V. PMID: 35415991; PMCID: PMC9005200.
View in:
PubMed Mentions:
4 Fields:
-
Corneal transparency and scleral opacity arises from the nanoarchitecture of the constituent collagen fibrils. Biomed Opt Express. 2022 Mar 01; 13(3):1485-1496.
Tseng SH, Yang CY, Li JH, Jeng YM, Ranasinghesagara JC, Venugopalan V. PMID: 35414992; PMCID: PMC8973168.
View in:
PubMed Mentions:
-
Comparative analysis of discrete and continuous absorption weighting estimators used in Monte Carlo simulations of radiative transport in turbid media: erratum. J Opt Soc Am A Opt Image Sci Vis. 2021 May 01; 38(5):749.
Hayakawa CK, Spanier J, Venugopalan V. PMID: 33983280.
View in:
PubMed Mentions: Fields:
-
Single-shot interferometric measurement of cavitation bubble dynamics. Opt Lett. 2021 Mar 15; 46(6):1409-1412.
Wilson BG, Fan Z, Sreedasyam R, Botvinick EL, Venugopalan V. PMID: 33720199; PMCID: PMC9233925.
View in:
PubMed Mentions:
2 Fields:
-
Laser cavitation rheology for measurement of elastic moduli and failure strain within hydrogels. Sci Rep. 2020 08 04; 10(1):13144.
Luo JC, Ching H, Wilson BG, Mohraz A, Botvinick EL, Venugopalan V. PMID: 32753667; PMCID: PMC7403306.
View in:
PubMed Mentions:
3 Fields:
-
Optical sampling depth in the spatial frequency domain. J Biomed Opt. 2019 07; 24(7).
Hayakawa CK, Karrobi K, Pera V, Roblyer D, Venugopalan V. PMID: 30218504; PMCID: PMC6675966.
View in:
PubMed Mentions:
21 Fields:
Translation:
HumansAnimals
-
Recovery of layered tissue optical properties from spatial frequency-domain spectroscopy and a deterministic radiative transport solver. J Biomed Opt. 2018 11; 24(7):1-11.
Horan ST, Gardner AR, Saager R, Durkin AJ, Venugopalan V. PMID: 30456934; PMCID: PMC6995875.
View in:
PubMed Mentions:
4 Fields:
-
Optical sampling depth in the spatial frequency domain. J Biomed Opt. 2018 08; 23(8):1-14.
Hayakawa CK, Karrobi K, Pera V, Roblyer D, Venugopalan V. PMID: 30141285.
View in:
PubMed Mentions:
1 Fields:
Translation:
Humans
-
Effect of scattering on coherent anti-Stokes Raman scattering (CARS) signals. Opt Express. 2017 Apr 17; 25(8):8638-8652.
Ranasinghesagara JC, De Vito G, Piazza V, Potma EO, Venugopalan V. PMID: 28437941; PMCID: PMC5462071.
View in:
PubMed Mentions:
2 Fields:
-
Multi-scale silica structures for improved HIV-1 Capsid (p24) antigen detection. Analyst. 2016 Jun 20; 141(13):4181-8.
Lin S, Hedde PN, Venugopalan V, Gratton E, Khine M. PMID: 27163263; PMCID: PMC4924925.
View in:
PubMed Mentions: Fields:
Translation:
Cells
-
Development of perturbation Monte Carlo methods for polarized light transport in a discrete particle scattering model. Biomed Opt Express. 2016 May 01; 7(5):2051-66.
Nguyen J, Hayakawa CK, Mourant JR, Venugopalan V, Spanier J. PMID: 27231642; PMCID: PMC4871102.
View in:
PubMed Mentions:
1
-
Differential pathlength factor informs evoked stimulus response in a mouse model of Alzheimer's disease. Neurophotonics. 2015 Oct; 2(4):045001.
Lin AJ, Ponticorvo A, Durkin AJ, Venugopalan V, Choi B, Tromberg BJ. PMID: 26835482; PMCID: PMC4718154.
View in:
PubMed Mentions:
4
-
High-throughput optical screening of cellular mechanotransduction. Nat Photonics. 2014 Sep 01; 8:710-715.
Compton JL, Luo JC, Ma H, Botvinick E, Venugopalan V. PMID: 25309621; PMCID: PMC4189826.
View in:
PubMed Mentions:
16
-
Low-density plasma formation in aqueous biological media using sub-nanosecond laser pulses. Appl Phys Lett. 2014 Aug 11; 105(6):063701.
Genc SL, Ma H, Venugopalan V. PMID: 25278618; PMCID: PMC4144155.
View in:
PubMed Mentions:
5
-
Rapid computation of the amplitude and phase of tightly focused optical fields distorted by scattering particles. J Opt Soc Am A Opt Image Sci Vis. 2014 Jul 01; 31(7):1520-30.
Ranasinghesagara JC, Hayakawa CK, Davis MA, Dunn AK, Potma EO, Venugopalan V. PMID: 25121440; PMCID: PMC4213127.
View in:
PubMed Mentions:
3 Fields:
-
Coupled forward-adjoint Monte Carlo simulation of spatial-angular light fields to determine optical sensitivity in turbid media. J Biomed Opt. 2014 Jun; 19(6):065003.
Gardner AR, Hayakawa CK, Venugopalan V. PMID: 24972356; PMCID: PMC4073599.
View in:
PubMed Mentions:
9 Fields:
Translation:
Humans
-
Time-resolved digital holographic microscopy of laser-induced forward transfer process. Appl Phys B. 2014 Mar 01; 114(3):361-366.
Ma H, Venugopalan V. PMID: 24748724; PMCID: PMC3990434.
View in:
PubMed Mentions:
-
Comparative analysis of discrete and continuous absorption weighting estimators used in Monte Carlo simulations of radiative transport in turbid media. J Opt Soc Am A Opt Image Sci Vis. 2014 Feb 01; 31(2):301-11.
Hayakawa CK, Spanier J, Venugopalan V. PMID: 24562029; PMCID: PMC4106716.
View in:
PubMed Mentions:
12 Fields:
Translation:
Cells
-
Hydrodynamic determinants of cell necrosis and molecular delivery produced by pulsed laser microbeam irradiation of adherent cells. Biophys J. 2013 Nov 05; 105(9):2221-31.
Compton JL, Hellman AN, Venugopalan V. PMID: 24209868; PMCID: PMC3824719.
View in:
PubMed Mentions:
8 Fields:
Translation:
AnimalsCells
-
Radiative transport produced by oblique illumination of turbid media with collimated beams. Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Jun; 87(6):063308.
Gardner AR, Kim AD, Venugopalan V. PMID: 23848807; PMCID: PMC3940417.
View in:
PubMed Mentions:
3 Fields:
-
In vivo multiphoton NADH fluorescence reveals depth-dependent keratinocyte metabolism in human skin. Biophys J. 2013 Jan 08; 104(1):258-67.
Balu M, Mazhar A, Hayakawa CK, Mittal R, Krasieva TB, König K, Venugopalan V, Tromberg BJ. PMID: 23332078; PMCID: PMC3540245.
View in:
PubMed Mentions:
46 Fields:
Translation:
HumansCellsCTClinical Trials
-
Impact of release dynamics of laser-irradiated polymer micropallets on the viability of selected adherent cells. J R Soc Interface. 2012 Jun 07; 9(71):1156-67.
Ma H, Mismar W, Wang Y, Small DW, Ras M, Allbritton NL, Sims CE, Venugopalan V. PMID: 22158840; PMCID: PMC3350736.
View in:
PubMed Mentions:
5 Fields:
Translation:
HumansCells
-
Analysis of single Monte Carlo methods for prediction of reflectance from turbid media. Opt Express. 2011 Sep 26; 19(20):19627-42.
Martinelli M, Gardner A, Cuccia D, Hayakawa C, Spanier J, Venugopalan V. PMID: 21996904; PMCID: PMC3347703.
View in:
PubMed Mentions:
22 Fields:
-
Accurate and efficient Monte Carlo solutions to the radiative transport equation in the spatial frequency domain. Opt Lett. 2011 Jun 15; 36(12):2269-71.
Gardner AR, Venugopalan V. PMID: 21685989; PMCID: PMC3312025.
View in:
PubMed Mentions:
7 Fields:
-
Electric field Monte Carlo simulations of focal field distributions produced by tightly focused laser beams in tissues. Biomed Opt Express. 2011 Jan 06; 2(2):278-90.
Hayakawa CK, Potma EO, Venugopalan V. PMID: 21339874; PMCID: PMC3039457.
View in:
PubMed Mentions:
7
-
Examination of axonal injury and regeneration in micropatterned neuronal culture using pulsed laser microbeam dissection. Lab Chip. 2010 Aug 21; 10(16):2083-92.
Hellman AN, Vahidi B, Kim HJ, Mismar W, Steward O, Jeon NL, Venugopalan V. PMID: 20532390; PMCID: PMC3380453.
View in:
PubMed Mentions:
21 Fields:
Translation:
HumansAnimalsCells
-
Nonspherical laser-induced cavitation bubbles. Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Jan; 81(1 Pt 2):016308.
Lim KY, Quinto-Su PA, Klaseboer E, Khoo BC, Venugopalan V, Ohl CD. PMID: 20365461.
View in:
PubMed Mentions:
5 Fields:
-
Amplitude and phase of tightly focused laser beams in turbid media. Phys Rev Lett. 2009 Jul 24; 103(4):043903.
Hayakawa CK, Venugopalan V, Krishnamachari VV, Potma EO. PMID: 19659354; PMCID: PMC2850562.
View in:
PubMed Mentions:
8 Fields:
-
Characterization and use of laser-based lysis for cell analysis on-chip. J R Soc Interface. 2008 Oct 06; 5 Suppl 2:S113-21.
Lai HH, Quinto-Su PA, Sims CE, Bachman M, Li GP, Venugopalan V, Allbritton NL. PMID: 18583277; PMCID: PMC2706033.
View in:
PubMed Mentions:
12 Fields:
Translation:
AnimalsCells
-
Mechanisms of pulsed laser microbeam release of SU-8 polymer "micropallets" for the collection and separation of adherent cells. Anal Chem. 2008 Jun 15; 80(12):4675-9.
Quinto-Su PA, To'a Salazar G, Sims CE, Allbritton NL, Venugopalan V. PMID: 18489124; PMCID: PMC2525502.
View in:
PubMed Mentions:
12 Fields:
-
Biophysical response to pulsed laser microbeam-induced cell lysis and molecular delivery. J Biophotonics. 2008 Mar; 1(1):24-35.
Hellman AN, Rau KR, Yoon HH, Venugopalan V. PMID: 19343632; PMCID: PMC3155384.
View in:
PubMed Mentions:
27 Fields:
Translation:
AnimalsCells
-
Radiative transport in the delta-P1 approximation for semi-infinite turbid media. Med Phys. 2008 Feb; 35(2):681-93.
Seo I, Hayakawa CK, Venugopalan V. PMID: 18383690; PMCID: PMC3509770.
View in:
PubMed Mentions:
10 Fields:
-
Examination of laser microbeam cell lysis in a PDMS microfluidic channel using time-resolved imaging. Lab Chip. 2008 Mar; 8(3):408-14.
Quinto-Su PA, Lai HH, Yoon HH, Sims CE, Allbritton NL, Venugopalan V. PMID: 18305858; PMCID: PMC2525503.
View in:
PubMed Mentions:
33 Fields:
Translation:
Cells
-
Optoacoustic imaging based on the interferometric measurement of surface displacement. J Biomed Opt. 2007 Nov-Dec; 12(6):064001.
Carp SA, Venugopalan V. PMID: 18163817.
View in:
PubMed Mentions:
13 Fields:
Translation:
Animals
-
Laser-induced mixing in microfluidic channels. Anal Chem. 2007 Jun 15; 79(12):4484-92.
Hellman AN, Rau KR, Yoon HH, Bae S, Palmer JF, Phillips KS, Allbritton NL, Venugopalan V. PMID: 17508715.
View in:
PubMed Mentions:
28 Fields:
Translation:
Cells
-
Perturbation and differential Monte Carlo methods for measurement of optical properties in a layered epithelial tissue model. J Biomed Opt. 2007 Jan-Feb; 12(1):014030.
Seo I, You JS, Hayakawa CK, Venugopalan V. PMID: 17343505.
View in:
PubMed Mentions:
14 Fields:
-
Mechanisms of laser cellular microsurgery. Methods Cell Biol. 2007; 82:113-51.
Quinto-Su PA, Venugopalan V. PMID: 17586256.
View in:
PubMed Mentions:
18 Fields:
Translation:
HumansAnimals
-
Estimating optical properties in layered tissues by use of the Born approximation of the radiative transport equation. Opt Lett. 2006 Apr 15; 31(8):1088-90.
Kim AD, Hayakawa C, Venugopalan V. PMID: 16625912.
View in:
PubMed Mentions:
1 Fields:
Translation:
HumansAnimals
-
Pulsed laser microbeam-induced cell lysis: time-resolved imaging and analysis of hydrodynamic effects. Biophys J. 2006 Jul 01; 91(1):317-29.
Rau KR, Quinto-Su PA, Hellman AN, Venugopalan V. PMID: 16617076; PMCID: PMC1479069.
View in:
PubMed Mentions:
58 Fields:
Translation:
AnimalsCells
-
Mid-IR laser ablation of articular and fibro-cartilage: a wavelength dependence study of thermal injury and crater morphology. Lasers Surg Med. 2006 Mar; 38(3):218-28.
Youn JI, Sweet P, Peavy GM, Venugopalan V. PMID: 16453331.
View in:
PubMed Mentions:
6 Fields:
Translation:
Animals
-
Frequency domain photon migration in the delta- P1 approximation: analysis of ballistic, transport, and diffuse regimes. Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Aug; 72(2 Pt 1):021903.
You JS, Hayakawa CK, Venugopalan V. PMID: 16196600.
View in:
PubMed Mentions:
1 Fields:
Translation:
Cells
-
Free electron laser ablation of articular and fibro-cartilage at 2.79, 2.9, 6.1, and 6.45 microm: mass removal studies. Lasers Surg Med. 2005 Mar; 36(3):202-9.
Youn JI, Peavy GM, Venugopalan V. PMID: 15704094.
View in:
PubMed Mentions:
1 Fields:
Translation:
Animals
-
Controlled ablation of microtubules using a picosecond laser. Biophys J. 2004 Dec; 87(6):4203-12.
Botvinick EL, Venugopalan V, Shah JV, Liaw LH, Berns MW. PMID: 15454403; PMCID: PMC1304929.
View in:
PubMed Mentions:
33 Fields:
Translation:
Cells
-
Use of the delta-P1 approximation for recovery of optical absorption, scattering, and asymmetry coefficients in turbid media. Appl Opt. 2004 Aug 20; 43(24):4677-84.
Hayakawa CK, Hill BY, You JS, Bevilacqua F, Spanier J, Venugopalan V. PMID: 15352392.
View in:
PubMed Mentions:
5 Fields:
-
Sampling tissue volumes using frequency-domain photon migration. Phys Rev E Stat Nonlin Soft Matter Phys. 2004 May; 69(5 Pt 1):051908.
Bevilacqua F, You JS, Hayakawa CK, Venugopalan V. PMID: 15244848.
View in:
PubMed Mentions:
7 Fields:
Translation:
Cells
-
Radiative transport in the delta-P1 approximation: accuracy of fluence rate and optical penetration depth predictions in turbid semi-infinite media. J Biomed Opt. 2004 May-Jun; 9(3):632-47.
Carp SA, Prahl SA, Venugopalan V. PMID: 15189103.
View in:
PubMed Mentions:
27 Fields:
-
Optoacoustic determination of optical attenuation depth using interferometric detection. J Biomed Opt. 2003 Apr; 8(2):264-72.
Payne BP, Venugopalan V, Mikic BB, Nishioka NS. PMID: 12683853.
View in:
PubMed Mentions:
4 Fields:
Translation:
Cells
-
Optoacoustic tomography using time-resolved interferometric detection of surface displacement. J Biomed Opt. 2003 Apr; 8(2):273-80.
Payne BP, Venugopalan V, Mikic BB, Nishioka NS. PMID: 12683854.
View in:
PubMed Mentions:
14 Fields:
Translation:
HumansCells
-
Mechanisms of pulsed laser ablation of biological tissues. Chem Rev. 2003 Feb; 103(2):577-644.
Vogel A, Venugopalan V. PMID: 12580643.
View in:
PubMed Mentions:
286 Fields:
Translation:
HumansAnimalsCells
-
Role of laser-induced plasma formation in pulsed cellular microsurgery and micromanipulation. Phys Rev Lett. 2002 Feb 18; 88(7):078103.
Venugopalan V, Guerra A, Nahen K, Vogel A. PMID: 11863944.
View in:
PubMed Mentions:
48 Fields:
Translation:
Cells
-
Gene inactivation by multiphoton-targeted photochemistry. Proc Natl Acad Sci U S A. 2000 Aug 15; 97(17):9504-7.
Berns MW, Wang Z, Dunn A, Wallace V, Venugopalan V. PMID: 10944219; PMCID: PMC16894.
View in:
PubMed Mentions:
12 Fields:
Translation:
AnimalsCells
-
Chemometric analysis of frequency-domain photon migration data: quantitative measurements of optical properties and chromophore concentrations in multicomponent turbid media. Appl Opt. 2000 Apr 01; 39(10):1659-67.
Berger AJ, Venugopalan V, Durkin AJ, Pham T, Tromberg BJ. PMID: 18345066.
View in:
PubMed Mentions:
1 Fields:
-
Comparison of cortical bone ablations by using infrared laser wavelengths 2.9 to 9.2 microm. Lasers Surg Med. 1999; 25(5):421-34.
Peavy GM, Reinisch L, Payne JT, Venugopalan V. PMID: 10602135.
View in:
PubMed Mentions:
11 Fields:
Translation:
AnimalsCells
-
Non-invasive measurements of breast tissue optical properties using frequency-domain photon migration. Philos Trans R Soc Lond B Biol Sci. 1997 Jun 29; 352(1354):661-8.
Tromberg BJ, Coquoz O, Fishkin JB, Pham T, Anderson ER, Butler J, Cahn M, Gross JD, Venugopalan V, Pham D. PMID: 9232853; PMCID: PMC1691955.
View in:
PubMed Mentions:
41 Fields:
Translation:
Humans