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Microbial Evolution Drives Adaptation of Substrate Degradation on Decadal to Centennial Time Scales Relevant to Global Change. Ecol Lett. 2024 Oct; 27(10):e14530.
Abs E, Coulette D, Ciais P, Allison SD. PMID: 39412476.
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PHPublic Health
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The Impact of Microbial Interactions on Ecosystem Function Intensifies Under Stress. Ecol Lett. 2024 Oct; 27(10):e14528.
Bertolet BL, Rodriguez LC, Murúa JM, Favela A, Allison SD. PMID: 39474635.
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Emerging multiscale insights on microbial carbon use efficiency in the land carbon cycle. Nat Commun. 2024 Sep 13; 15(1):8010.
He X, Abs E, Allison SD, Tao F, Huang Y, Manzoni S, Abramoff R, Bruni E, Bowring SPK, Chakrawal A, Ciais P, Elsgaard L, Friedlingstein P, Georgiou K, Hugelius G, Holm LB, Li W, Luo Y, Marmasse G, Nunan N, Qiu C, Sitch S, Wang YP, Goll DS. PMID: 39271672; PMCID: PMC11399347.
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CellsPHPublic Health
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From soil to sequence: filling the critical gap in genome-resolved metagenomics is essential to the future of soil microbial ecology. Environ Microbiome. 2024 Aug 02; 19(1):56.
Anthony WE, Allison SD, Broderick CM, Chavez Rodriguez L, Clum A, Cross H, Eloe-Fadrosh E, Evans S, Fairbanks D, Gallery R, Gontijo JB, Jones J, McDermott J, Pett-Ridge J, Record S, Rodrigues JLM, Rodriguez-Reillo W, Shek KL, Takacs-Vesbach T, Blanchard JL. PMID: 39095861; PMCID: PMC11295382.
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The challenge of estimating global termite methane emissions. Glob Chang Biol. 2024 Jun; 30(6):e17390.
Law SJ, Allison SD, Davies AB, Flores-Moreno H, Wijas BJ, Yatsko AR, Zhou Y, Zanne AE, Eggleton P. PMID: 38899583.
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Animals
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Reply to: Microbial dark matter could add uncertainties to metagenomic trait estimations. Nat Microbiol. 2024 Jun; 9(6):1431-1433.
Piton G, Allison SD, Bahram M, Hildebrand F, Martiny JBH, Treseder KK, Martiny AC. PMID: 38740930.
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1 Fields:
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Cells
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Sphingomonas clade and functional distribution with simulated climate change. Microbiol Spectr. 2024 May 02; 12(5):e0023624.
Sorouri B, Scales NC, Gaut BS, Allison SD. PMID: 38572990; PMCID: PMC11064482.
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1 Fields:
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CellsPHPublic Health
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Microbial evolution-An under-appreciated driver of soil carbon cycling. Glob Chang Biol. 2024 Apr; 30(4):e17268.
Abs E, Chase AB, Manzoni S, Ciais P, Allison SD. PMID: 38562029.
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PHPublic Health
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Long-term drought promotes invasive species by reducing wildfire severity. Ecology. 2024 Apr; 105(4):e4265.
Kimball S, Rath J, Coffey JE, Perea-Vega MR, Walsh M, Fiore NM, Ta PM, Schmidt KT, Goulden ML, Allison SD. PMID: 38380597.
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Animals
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Bacterial population-level trade-offs between drought tolerance and resource acquisition traits impact decomposition. ISME J. 2024 Jan 08; 18(1).
Malik AA, Martiny JBH, Ribeiro A, Sheridan PO, Weihe C, Brodie EL, Allison SD. PMID: 39495619.
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CellsPHPublic Health
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Shifts in internal stem damage along a tropical precipitation gradient and implications for forest biomass estimation. New Phytol. 2024 Feb; 241(3):1047-1061.
Flores-Moreno H, Yatsko AR, Cheesman AW, Allison SD, Cernusak LA, Cheney R, Clement RA, Cooper W, Eggleton P, Jensen R, Rosenfield M, Zanne AE. PMID: 38087814.
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Animals
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Life history strategies of soil bacterial communities across global terrestrial biomes. Nat Microbiol. 2023 Nov; 8(11):2093-2102.
Piton G, Allison SD, Bahram M, Hildebrand F, Martiny JBH, Treseder KK, Martiny AC. PMID: 37798477.
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12 Fields:
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CellsPHPublic Health
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Variation in Sphingomonas traits across habitats and phylogenetic clades. Front Microbiol. 2023; 14:1146165.
Sorouri B, Rodriguez CI, Gaut BS, Allison SD. PMID: 37138640; PMCID: PMC10150699.
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Microbial drought resistance may destabilize soil carbon. Trends Microbiol. 2023 08; 31(8):780-787.
Allison SD. PMID: 37059647.
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4 Fields:
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AnimalsPHPublic Health
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Investigating the eco-evolutionary response of microbiomes to environmental change. Ecol Lett. 2023 Sep; 26 Suppl 1:S81-S90.
Martiny JBH, Martiny AC, Brodie E, Chase AB, Rodríguez-Verdugo A, Treseder KK, Allison SD. PMID: 36965002.
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10 Fields:
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How do soil microbes shape ecosystem biogeochemistry in the context of global change? Environ Microbiol. 2023 04; 25(4):780-785.
Abs E, Chase AB, Allison SD. PMID: 36579433.
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3 Fields:
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PHPublic Health
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Effects of experimental nitrogen deposition on soil organic carbon storage in Southern California drylands. Glob Chang Biol. 2023 03; 29(6):1660-1679.
Püspök JF, Zhao S, Calma AD, Vourlitis GL, Allison SD, Aronson EL, Schimel JP, Hanan EJ, Homyak PM. PMID: 36527334.
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1 Fields:
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PHPublic Health
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Phenotypic plasticity of fungal traits in response to moisture and temperature. ISME Commun. 2021 Aug 28; 1(1):43.
Alster CJ, Allison SD, Johnson NG, Glassman SI, Treseder KK. PMID: 36740602; PMCID: PMC9723763.
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3
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Exploring Trait Trade-Offs for Fungal Decomposers in a Southern California Grassland. Front Microbiol. 2021; 12:655987.
Alster CJ, Allison SD, Glassman SI, Martiny AC, Treseder KK. PMID: 33995318; PMCID: PMC8118720.
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Carbon flux and forest dynamics: Increased deadwood decomposition in tropical rainforest tree-fall canopy gaps. Glob Chang Biol. 2021 04; 27(8):1601-1613.
Griffiths HM, Eggleton P, Hemming-Schroeder N, Swinfield T, Woon JS, Allison SD, Coomes DA, Ashton LA, Parr CL. PMID: 33506557.
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3 Fields:
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Animals
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Drought and plant litter chemistry alter microbial gene expression and metabolite production. ISME J. 2020 09; 14(9):2236-2247.
Malik AA, Swenson T, Weihe C, Morrison EW, Martiny JBH, Brodie EL, Northen TR, Allison SD. PMID: 32444813; PMCID: PMC7608424.
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24 Fields:
Translation:
Animals
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Embracing a new paradigm for temperature sensitivity of soil microbes. Glob Chang Biol. 2020 06; 26(6):3221-3229.
Alster CJ, von Fischer JC, Allison SD, Treseder KK. PMID: 32097522.
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13 Fields:
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PHPublic Health
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Bacterial Tradeoffs in Growth Rate and Extracellular Enzymes. Front Microbiol. 2019; 10:2956.
Ramin KI, Allison SD. PMID: 31921094; PMCID: PMC6933949.
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27
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Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change. ISME J. 2020 01; 14(1):1-9.
Malik AA, Martiny JBH, Brodie EL, Martiny AC, Treseder KK, Allison SD. PMID: 31554911; PMCID: PMC6908601.
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129 Fields:
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Traits track taxonomy. Nat Ecol Evol. 2019 07; 3(7):1001-1002.
Allison SD. PMID: 31209291.
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Phylogenetic conservation of bacterial responses to soil nitrogen addition across continents. Nat Commun. 2019 06 07; 10(1):2499.
Isobe K, Allison SD, Khalili B, Martiny AC, Martiny JBH. PMID: 31175309; PMCID: PMC6555827.
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19 Fields:
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CellsPHPublic Health
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Building bottom-up aggregate-based models (ABMs) in soil systems with a view of aggregates as biogeochemical reactors. Glob Chang Biol. 2019 08; 25(8):e6-e8.
Wang B, Brewer PE, Shugart HH, Lerdau MT, Allison SD. PMID: 31087714.
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Reduced carbon use efficiency and increased microbial turnover with soil warming. Glob Chang Biol. 2019 03; 25(3):900-910.
Li J, Wang G, Mayes MA, Allison SD, Frey SD, Shi Z, Hu XM, Luo Y, Melillo JM. PMID: 30417564.
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8 Fields:
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PHPublic Health
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Soil aggregates as biogeochemical reactors and implications for soil-atmosphere exchange of greenhouse gases-A concept. Glob Chang Biol. 2019 02; 25(2):373-385.
Wang B, Brewer PE, Shugart HH, Lerdau MT, Allison SD. PMID: 30412646.
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8 Fields:
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Drought increases the frequencies of fungal functional genes related to carbon and nitrogen acquisition. PLoS One. 2018; 13(11):e0206441.
Treseder KK, Berlemont R, Allison SD, Martiny AC. PMID: 30462680; PMCID: PMC6248904.
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5 Fields:
Translation:
Animals
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Decomposition responses to climate depend on microbial community composition. Proc Natl Acad Sci U S A. 2018 11 20; 115(47):11994-11999.
Glassman SI, Weihe C, Li J, Albright MBN, Looby CI, Martiny AC, Treseder KK, Allison SD, Martiny JBH. PMID: 30397146; PMCID: PMC6255157.
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54 Fields:
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AnimalsCells
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Emergence of soil bacterial ecotypes along a climate gradient. Environ Microbiol. 2018 11; 20(11):4112-4126.
Chase AB, Gomez-Lunar Z, Lopez AE, Li J, Allison SD, Martiny AC, Martiny JBH. PMID: 30209883.
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17 Fields:
Translation:
CellsPHPublic Health
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Microbial decomposers not constrained by climate history along a Mediterranean climate gradient in southern California. Ecology. 2018 06; 99(6):1441-1452.
Baker NR, Khalili B, Martiny JBH, Allison SD. PMID: 29663355.
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6 Fields:
Translation:
AnimalsPHPublic Health
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Temperature sensitivities of extracellular enzyme Vmax and Km across thermal environments. Glob Chang Biol. 2018 07; 24(7):2884-2897.
Allison SD, Romero-Olivares AL, Lu Y, Taylor JW, Treseder KK. PMID: 29322601.
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13 Fields:
Translation:
AnimalsPHPublic Health
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Decomposition of recalcitrant carbon under experimental warming in boreal forest. PLoS One. 2017; 12(6):e0179674.
Romero-Olivares AL, Allison SD, Treseder KK. PMID: 28622366; PMCID: PMC5473569.
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5 Fields:
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Phylogenetic conservation of substrate use specialization in leaf litter bacteria. PLoS One. 2017; 12(3):e0174472.
Dolan KL, Peña J, Allison SD, Martiny JB. PMID: 28358894; PMCID: PMC5373539.
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8 Fields:
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CellsPHPublic Health
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Temperature response of soil respiration largely unaltered with experimental warming. Proc Natl Acad Sci U S A. 2016 11 29; 113(48):13797-13802.
Carey JC, Tang J, Templer PH, Kroeger KD, Crowther TW, Burton AJ, Dukes JS, Emmett B, Frey SD, Heskel MA, Jiang L, Machmuller MB, Mohan J, Panetta AM, Reich PB, Reinsch S, Wang X, Allison SD, Bamminger C, Bridgham S, Collins SL, de Dato G, Eddy WC, Enquist BJ, Estiarte M, Harte J, Henderson A, Johnson BR, Larsen KS, Luo Y, Marhan S, Melillo JM, Peñuelas J, Pfeifer-Meister L, Poll C, Rastetter E, Reinmann AB, Reynolds LL, Schmidt IK, Shaver GR, Strong AL, Suseela V, Tietema A. PMID: 27849609; PMCID: PMC5137763.
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44 Fields:
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Microbial legacies alter decomposition in response to simulated global change. ISME J. 2017 02; 11(2):490-499.
Martiny JB, Martiny AC, Weihe C, Lu Y, Berlemont R, Brodie EL, Goulden ML, Treseder KK, Allison SD. PMID: 27740610; PMCID: PMC5270563.
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36 Fields:
Translation:
AnimalsCells
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Radiocarbon constraints imply reduced carbon uptake by soils during the 21st century. Science. 2016 09 23; 353(6306):1419-1424.
He Y, Trumbore SE, Torn MS, Harden JW, Vaughn LJ, Allison SD, Randerson JT. PMID: 27708036.
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18 Fields:
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Agroforestry Practices Promote Biodiversity and Natural Resource Diversity in Atlantic Nicaragua. PLoS One. 2016; 11(9):e0162529.
Sistla SA, Roddy AB, Williams NE, Kramer DB, Stevens K, Allison SD. PMID: 27606619; PMCID: PMC5015841.
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4 Fields:
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Effects of dispersal and selection on stochastic assembly in microbial communities. ISME J. 2017 01; 11(1):176-185.
Evans S, Martiny JB, Allison SD. PMID: 27494293; PMCID: PMC5315486.
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99 Fields:
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Cells
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Quantum Dots Reveal Shifts in Organic Nitrogen Uptake by Fungi Exposed to Long-Term Nitrogen Enrichment. PLoS One. 2015; 10(9):e0138158.
Hynson NA, Allison SD, Treseder KK. PMID: 26367868; PMCID: PMC4569051.
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3 Fields:
Translation:
AnimalsPHPublic Health
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Ultraviolet photodegradation facilitates microbial litter decomposition in a Mediterranean climate. Ecology. 2015 Jul; 96(7):1994-2003.
Baker NR, Allison SD. PMID: 26378321.
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11 Fields:
Translation:
AnimalsCellsPHPublic Health
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Microbial response to simulated global change is phylogenetically conserved and linked with functional potential. ISME J. 2016 Jan; 10(1):109-18.
Amend AS, Martiny AC, Allison SD, Berlemont R, Goulden ML, Lu Y, Treseder KK, Weihe C, Martiny JB. PMID: 26046258; PMCID: PMC4681869.
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44 Fields:
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AnimalsCellsPHPublic Health
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Temporal variation overshadows the response of leaf litter microbial communities to simulated global change. ISME J. 2015 Nov; 9(11):2477-89.
Matulich KL, Weihe C, Allison SD, Amend AS, Berlemont R, Goulden ML, Kimball S, Martiny AC, Martiny JB. PMID: 25978544; PMCID: PMC4611511.
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39 Fields:
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AnimalsCellsPHPublic Health
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Cellulolytic potential under environmental changes in microbial communities from grassland litter. Front Microbiol. 2014; 5:639.
Berlemont R, Allison SD, Weihe C, Lu Y, Brodie EL, Martiny JB, Martiny AC. PMID: 25505459; PMCID: PMC4243572.
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35
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Modeling adaptation of carbon use efficiency in microbial communities. Front Microbiol. 2014; 5:571.
Allison SD. PMID: 25389423; PMCID: PMC4211550.
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23
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Extracellular enzyme production and cheating in Pseudomonas fluorescens depend on diffusion rates. Front Microbiol. 2014; 5:169.
Allison SD, Lu L, Kent AG, Martiny AC. PMID: 24782855; PMCID: PMC3990056.
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13
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Phylogenetic constraints on elemental stoichiometry and resource allocation in heterotrophic marine bacteria. Environ Microbiol. 2014 May; 16(5):1398-410.
Zimmerman AE, Allison SD, Martiny AC. PMID: 24237481.
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22 Fields:
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Cells
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Environmental impacts on the diversity of methane-cycling microbes and their resultant function. Front Microbiol. 2013; 4:225.
Aronson EL, Allison SD, Helliker BR. PMID: 23966984; PMCID: PMC3743065.
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22
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Ectomycorrhizal-dominated boreal and tropical forests have distinct fungal communities, but analogous spatial patterns across soil horizons. PLoS One. 2013; 8(7):e68278.
McGuire KL, Allison SD, Fierer N, Treseder KK. PMID: 23874569; PMCID: PMC3706605.
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18 Fields:
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AnimalsPHPublic Health
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Microbial abundance and composition influence litter decomposition response to environmental change. Ecology. 2013 Mar; 94(3):714-25.
Allison SD, Lu Y, Weihe C, Goulden ML, Martiny AC, Treseder KK, Martiny JB. PMID: 23687897.
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84 Fields:
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AnimalsCellsPHPublic Health
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Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes. ISME J. 2013 Jun; 7(6):1187-99.
Zimmerman AE, Martiny AC, Allison SD. PMID: 23303371; PMCID: PMC3660669.
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57 Fields:
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Cells
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Fundamentals of microbial community resistance and resilience. Front Microbiol. 2012; 3:417.
Shade A, Peter H, Allison SD, Baho DL, Berga M, Bürgmann H, Huber DH, Langenheder S, Lennon JT, Martiny JB, Matulich KL, Schmidt TM, Handelsman J. PMID: 23267351; PMCID: PMC3525951.
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PubMed Mentions:
456
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Cooperation, competition, and coalitions in enzyme-producing microbes: social evolution and nutrient depolymerization rates. Front Microbiol. 2012; 3:338.
Folse HJ, Allison SD. PMID: 23060866; PMCID: PMC3459022.
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22
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Fine-scale temporal variation in marine extracellular enzymes of coastal southern california. Front Microbiol. 2012; 3:301.
Allison SD, Chao Y, Farrara JD, Hatosy S, Martiny AC. PMID: 22912628; PMCID: PMC3421452.
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11
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Meta-analysis of environmental impacts on nitrous oxide release in response to N amendment. Front Microbiol. 2012; 3:272.
Aronson EL, Allison SD. PMID: 22866053; PMCID: PMC3408851.
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2
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A trait-based approach for modelling microbial litter decomposition. Ecol Lett. 2012 Sep; 15(9):1058-70.
Allison SD. PMID: 22642621.
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75 Fields:
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AnimalsPHPublic Health
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Substrate concentration and enzyme allocation can affect rates of microbial decomposition. Ecology. 2011 Jul; 92(7):1471-80.
German DP, Chacon SS, Allison SD. PMID: 21870621.
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14 Fields:
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AnimalsCellsPHPublic Health
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Drivers of bacterial beta-diversity depend on spatial scale. Proc Natl Acad Sci U S A. 2011 May 10; 108(19):7850-4.
Martiny JB, Eisen JA, Penn K, Allison SD, Horner-Devine MC. PMID: 21518859; PMCID: PMC3093525.
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233 Fields:
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Cells
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Functional diversity in resource use by fungi. Ecology. 2010 Aug; 91(8):2324-32.
McGuire KL, Bent E, Borneman J, Majumder A, Allison SD, Tresederi KK. PMID: 20836454.
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41 Fields:
Translation:
Animals
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Stoichiometry of soil enzyme activity at global scale. Ecol Lett. 2008 Nov; 11(11):1252-1264.
Sinsabaugh RL, Lauber CL, Weintraub MN, Ahmed B, Allison SD, Crenshaw C, Contosta AR, Cusack D, Frey S, Gallo ME, Gartner TB, Hobbie SE, Holland K, Keeler BL, Powers JS, Stursova M, Takacs-Vesbach C, Waldrop MP, Wallenstein MD, Zak DR, Zeglin LH. PMID: 18823393.
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177 Fields:
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Colloquium paper: resistance, resilience, and redundancy in microbial communities. Proc Natl Acad Sci U S A. 2008 Aug 12; 105 Suppl 1:11512-9.
Allison SD, Martiny JB. PMID: 18695234; PMCID: PMC2556421.
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686 Fields:
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Plant species traits are the predominant control on litter decomposition rates within biomes worldwide. Ecol Lett. 2008 Oct; 11(10):1065-71.
Cornwell WK, Cornelissen JH, Amatangelo K, Dorrepaal E, Eviner VT, Godoy O, Hobbie SE, Hoorens B, Kurokawa H, Pérez-Harguindeguy N, Quested HM, Santiago LS, Wardle DA, Wright IJ, Aerts R, Allison SD, van Bodegom P, Brovkin V, Chatain A, Callaghan TV, Díaz S, Garnier E, Gurvich DE, Kazakou E, Klein JA, Read J, Reich PB, Soudzilovskaia NA, Vaieretti MV, Westoby M. PMID: 18627410.
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250 Fields:
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AnimalsPHPublic Health
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Why is most of the ground brown? Sci Am. 2006 Jul; 295(1):104.
Allison S, Waldstreicher J. PMID: 16830687.
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Brown ground: a soil carbon analogue for the green world hypothesis? Am Nat. 2006 May; 167(5):619-27.
Allison SD. PMID: 16671007.
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7 Fields:
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Biochemical responses of chestnut oak to a galling cynipid. J Chem Ecol. 2005 Jan; 31(1):151-66.
Allison SD, Schultz JC. PMID: 15839487.
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26 Fields:
Translation:
Animals
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Rapid nutrient cycling in leaf litter from invasive plants in Hawai'i. Oecologia. 2004 Dec; 141(4):612-9.
Allison SD, Vitousek PM. PMID: 15549401.
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56 Fields:
Translation:
Animals
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Differential activity of peroxidase isozymes in response to wounding, gypsy moth, and plant hormones in northern red oak (Quercus rubra L.). J Chem Ecol. 2004 Jul; 30(7):1363-79.
Allison SD, Schultz JC. PMID: 15503525.
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19 Fields:
Translation:
Animals
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Nitrogen and nature. Ambio. 2002 Mar; 31(2):97-101.
Vitousek PM, Hättenschwiler S, Olander L, Allison S. PMID: 12078015.
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33 Fields:
Translation:
AnimalsCells