Brandon Stuart Gaut

Title(s)Professor, Ecology & Evolutionary Biology
SchoolSchool of Biological Sciences
Address5205-B McGaugh Hall
Zot 2525
Irvine CA 92697
Phone(949) 824-2564
ORCID ORCID Icon0000-0002-1334-5556 Additional info
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    1. Grapevine pangenome facilitates trait genetics and genomic breeding. Nat Genet. 2024 Nov 04. Liu Z, Wang N, Su Y, Long Q, Peng Y, Shangguan L, Zhang F, Cao S, Wang X, Ge M, Xue H, Ma Z, Liu W, Xu X, Li C, Cao X, Ahmad B, Su X, Liu Y, Huang G, Du M, Liu Z, Gan Y, Sun L, Fan X, Zhang C, Zhong H, Leng X, Ren Y, Dong T, Pei D, Wu X, Jin Z, Wang Y, Liu C, Chen J, Gaut B, Huang S, Fang J, Xiao H, Zhou Y. PMID: 39496880.
      View in: PubMed   Mentions:    Fields:    
    2. Patterns of Fitness and Gene Expression Epistasis Generated by Beneficial Mutations in the rho and rpoB Genes of Escherichia coli during High-Temperature Adaptation. Mol Biol Evol. 2024 Sep 04; 41(9). González-González A, Batarseh TN, Rodríguez-Verdugo A, Gaut BS. PMID: 39235107; PMCID: PMC11414761.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    3. Sphingomonas clade and functional distribution with simulated climate change. Microbiol Spectr. 2024 May 02; 12(5):e0023624. Sorouri B, Scales NC, Gaut BS, Allison SD. PMID: 38572990; PMCID: PMC11064482.
      View in: PubMed   Mentions: 1     Fields:    Translation:CellsPHPublic Health
    4. Forty Years of Inferential Methods in the Journals of the Society for Molecular Biology and Evolution. Mol Biol Evol. 2024 Jan 03; 41(1). Russo CAM, Eyre-Walker A, Katz LA, Gaut BS. PMID: 38197288; PMCID: PMC10763999.
      View in: PubMed   Mentions: 3     Fields:    
    5. Modeling transposable elements dynamics during polyploidization in plants. J Theor Biol. 2024 02 21; 579:111701. Meca E, Díez CM, Gaut BS. PMID: 38128754.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    6. A super-pangenome of the North American wild grape species. Genome Biol. 2023 12 19; 24(1):290. Cochetel N, Minio A, Guarracino A, Garcia JF, Figueroa-Balderas R, Massonnet M, Kasuga T, Londo JP, Garrison E, Gaut BS, Cantu D. PMID: 38111050; PMCID: PMC10729490.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    7. miRNA-like secondary structures in maize (Zea mays) genes and transposable elements correlate with small RNAs, methylation, and expression. Genome Res. 2023 Dec 01; 33(11):1932-1946. Martin GT, Solares E, Guadardo-Mendez J, Muyle A, Bousios A, Gaut BS. PMID: 37918960; PMCID: PMC10760457.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    8. Reply to Blanco-Pastor: Introgression and heterozygosity complicated grapevine domestication. Proc Natl Acad Sci U S A. 2023 Dec 05; 120(49):e2314162120. Xiao H, Liu Z, Wang N, Gaut BS, Zhou Y. PMID: 38011557; PMCID: PMC10710079.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    9. Multiple domestications of Asian rice. Nat Plants. 2023 08; 9(8):1221-1235. Jing CY, Zhang FM, Wang XH, Wang MX, Zhou L, Cai Z, Han JD, Geng MF, Yu WH, Jiao ZH, Huang L, Liu R, Zheng XM, Meng QL, Ren NN, Zhang HX, Du YS, Wang X, Qiang CG, Zou XH, Gaut BS, Ge S. PMID: 37550371.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    10. Sampling effect in predicting the evolutionary response of populations to climate change. Mol Ecol Resour. 2023 Jun 30. Aguirre-Liguori JA, Morales-Cruz A, Gaut BS, Ramírez-Barahona S. PMID: 37392001.
      View in: PubMed   Mentions:    Fields:    
    11. Comparative genomics of the Liberibacter genus reveals widespread diversity in genomic content and positive selection history. Front Microbiol. 2023; 14:1206094. Batarseh TN, Batarseh SN, Morales-Cruz A, Gaut BS. PMID: 37434713; PMCID: PMC10330825.
      View in: PubMed   Mentions: 2  
    12. Adaptive and maladaptive introgression in grapevine domestication. Proc Natl Acad Sci U S A. 2023 06 13; 120(24):e2222041120. Xiao H, Liu Z, Wang N, Long Q, Cao S, Huang G, Liu W, Peng Y, Riaz S, Walker AM, Gaut BS, Zhou Y. PMID: 37276420; PMCID: PMC10268302.
      View in: PubMed   Mentions: 18     Fields:    Translation:Animals
    13. Multigenic resistance to Xylella fastidiosa in wild grapes (Vitis sps.) and its implications within a changing climate. Commun Biol. 2023 05 30; 6(1):580. Morales-Cruz A, Aguirre-Liguori J, Massonnet M, Minio A, Zaccheo M, Cochetel N, Walker A, Riaz S, Zhou Y, Cantu D, Gaut BS. PMID: 37253933; PMCID: PMC10229667.
      View in: PubMed   Mentions: 8  Translation:AnimalsCells
    14. Phenotypic and Genotypic Adaptation of Escherichia coli to Thermal Stress is Contingent on Genetic Background. Mol Biol Evol. 2023 05 02; 40(5). Batarseh TN, Batarseh SN, Rodríguez-Verdugo A, Gaut BS. PMID: 37140066; PMCID: PMC10195153.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    15. Variation in Sphingomonas traits across habitats and phylogenetic clades. Front Microbiol. 2023; 14:1146165. Sorouri B, Rodriguez CI, Gaut BS, Allison SD. PMID: 37138640; PMCID: PMC10150699.
      View in: PubMed   Mentions:
    16. Insights into the domestication of avocado and potential genetic contributors to heterodichogamy. G3 (Bethesda). 2023 02 09; 13(2). Solares E, Morales-Cruz A, Balderas RF, Focht E, Ashworth VETM, Wyant S, Minio A, Cantu D, Arpaia ML, Gaut BS. PMID: 36477810; PMCID: PMC9911064.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    17. Inaugural Editorial, January 2023. Mol Biol Evol. 2023 Jan 04; 40(1). Gaut BS, Russo CAM. PMID: 36611012; PMCID: PMC9825318.
      View in: PubMed   Mentions:    Fields:    
    18. Evaluating the persistence and utility of five wild Vitis species in the context of climate change. Mol Ecol. 2022 12; 31(24):6457-6472. Aguirre-Liguori JA, Morales-Cruz A, Gaut BS. PMID: 36197804; PMCID: PMC10092629.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    19. Using Genomes and Evolutionary Analyses to Screen for Host-Specificity and Positive Selection in the Plant Pathogen Xylella fastidiosa. Appl Environ Microbiol. 2022 09 22; 88(18):e0122022. Batarseh TN, Morales-Cruz A, Ingel B, Roper MC, Gaut BS. PMID: 36094203; PMCID: PMC9499020.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    20. The 3D architecture of the pepper genome and its relationship to function and evolution. Nat Commun. 2022 06 16; 13(1):3479. Liao Y, Wang J, Zhu Z, Liu Y, Chen J, Zhou Y, Liu F, Lei J, Gaut BS, Cao B, Emerson JJ, Chen C. PMID: 35710823; PMCID: PMC9203530.
      View in: PubMed   Mentions: 25     Fields:    Translation:AnimalsCells
    21. Structural variation and parallel evolution of apomixis in citrus during domestication and diversification. Natl Sci Rev. 2022 Oct; 9(10):nwac114. Wang N, Song X, Ye J, Zhang S, Cao Z, Zhu C, Hu J, Zhou Y, Huang Y, Cao S, Liu Z, Wu X, Chai L, Guo W, Xu Q, Gaut BS, Koltunow AMG, Zhou Y, Deng X. PMID: 36415319; PMCID: PMC9671666.
      View in: PubMed   Mentions: 11  
    22. Gene Body Methylation in Plants: Mechanisms, Functions, and Important Implications for Understanding Evolutionary Processes. Genome Biol Evol. 2022 04 10; 14(4). Muyle AM, Seymour DK, Lv Y, Huettel B, Gaut BS. PMID: 35298639; PMCID: PMC8995044.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    23. Introgression among North American wild grapes (Vitis) fuels biotic and abiotic adaptation. Genome Biol. 2021 09 03; 22(1):254. Morales-Cruz A, Aguirre-Liguori JA, Zhou Y, Minio A, Riaz S, Walker AM, Cantu D, Gaut BS. PMID: 34479604; PMCID: PMC8414701.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    24. The evolutionary genomics of species' responses to climate change. Nat Ecol Evol. 2021 10; 5(10):1350-1360. Aguirre-Liguori JA, Ramírez-Barahona S, Gaut BS. PMID: 34373621.
      View in: PubMed   Mentions: 37     Fields:    
    25. CHH Methylation Islands: A Nonconserved Feature of Grass Genomes That Is Positively Associated with Transposable Elements but Negatively Associated with Gene-Body Methylation. Genome Biol Evol. 2021 08 03; 13(8). Martin GT, Seymour DK, Gaut BS. PMID: 34146109; PMCID: PMC8374106.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    26. Gene body methylation is under selection in Arabidopsis thaliana. Genetics. 2021 06 24; 218(2). Muyle A, Ross-Ibarra J, Seymour DK, Gaut BS. PMID: 33871638; PMCID: PMC8225343.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    27. HapSolo: an optimization approach for removing secondary haplotigs during diploid genome assembly and scaffolding. BMC Bioinformatics. 2021 Jan 06; 22(1):9. Solares EA, Tao Y, Long AD, Gaut BS. PMID: 33407090; PMCID: PMC7788845.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    28. Evolutionary Genomics of Structural Variation in Asian Rice (Oryza sativa) Domestication. Mol Biol Evol. 2020 12 16; 37(12):3507-3524. Kou Y, Liao Y, Toivainen T, Lv Y, Tian X, Emerson JJ, Gaut BS, Zhou Y. PMID: 32681796; PMCID: PMC7743901.
      View in: PubMed   Mentions: 43     Fields:    Translation:AnimalsCells
    29. Sahara mustard as a major threat to desert biodiversity in the southwest United States and the need to integrate contemporary methods to understand its biology. Ecol Evol. 2020 Dec; 10(24):14453-14455. Winkler DE, Chapin KJ, Garmon JD, Gaut BS, Huxman TE. PMID: 33391728; PMCID: PMC7771142.
      View in: PubMed   Mentions:
    30. Gene capture by transposable elements leads to epigenetic conflict in maize. Mol Plant. 2021 02 01; 14(2):237-252. Muyle A, Seymour D, Darzentas N, Primetis E, Gaut BS, Bousios A. PMID: 33171302.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    31. Genetic Mutations That Drive Evolutionary Rescue to Lethal Temperature in Escherichia coli. Genome Biol Evol. 2020 11 03; 12(11):2029-2044. Batarseh TN, Hug SM, Batarseh SN, Gaut BS. PMID: 32785667; PMCID: PMC7750951.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    32. Genomic evidence for recurrent genetic admixture during the domestication of Mediterranean olive trees (Olea europaea L.). BMC Biol. 2020 10 26; 18(1):148. Julca I, Marcet-Houben M, Cruz F, Gómez-Garrido J, Gaut BS, Díez CM, Gut IG, Alioto TS, Vargas P, Gabaldón T. PMID: 33100219; PMCID: PMC7586694.
      View in: PubMed   Mentions: 31     Fields:    Translation:Animals
    33. Large chromosomal variants drive adaptation in sunflowers. Nat Plants. 2020 07; 6(7):734-735. Zhou Y, Gaut BS. PMID: 32665649.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    34. The genetic basis of sex determination in grapes. Nat Commun. 2020 06 09; 11(1):2902. Massonnet M, Cochetel N, Minio A, Vondras AM, Lin J, Muyle A, Garcia JF, Zhou Y, Delledonne M, Riaz S, Figueroa-Balderas R, Gaut BS, Cantu D. PMID: 32518223; PMCID: PMC7283251.
      View in: PubMed   Mentions: 80     Fields:    Translation:Animals
    35. Phylogenetic Shifts in Gene Body Methylation Correlate with Gene Expression and Reflect Trait Conservation. Mol Biol Evol. 2020 Jan 01; 37(1):31-43. Seymour DK, Gaut BS. PMID: 31504743.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    36. The genomic diversification of grapevine clones. BMC Genomics. 2019 Dec 12; 20(1):972. Vondras AM, Minio A, Blanco-Ulate B, Figueroa-Balderas R, Penn MA, Zhou Y, Seymour D, Ye Z, Liang D, Espinoza LK, Anderson MM, Walker MA, Gaut B, Cantu D. PMID: 31830913; PMCID: PMC6907202.
      View in: PubMed   Mentions: 35     Fields:    Translation:Animals
    37. Maize transposable elements contribute to long non-coding RNAs that are regulatory hubs for abiotic stress response. BMC Genomics. 2019 Nov 15; 20(1):864. Lv Y, Hu F, Zhou Y, Wu F, Gaut BS. PMID: 31729949; PMCID: PMC6858665.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    38. EvoChromo: towards a synthesis of chromatin biology and evolution. Development. 2019 09 26; 146(19). Drinnenberg IA, Berger F, Elsässer SJ, Andersen PR, Ausió J, Bickmore WA, Blackwell AR, Erwin DH, Gahan JM, Gaut BS, Harvey ZH, Henikoff S, Kao JY, Kurdistani SK, Lemos B, Levine MT, Luger K, Malik HS, Martín-Durán JM, Peichel CL, Renfree MB, Rutowicz K, Sarkies P, Schmitz RJ, Technau U, Thornton JW, Warnecke T, Wolfe KH. PMID: 31558570; PMCID: PMC7376748.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    39. The population genetics of structural variants in grapevine domestication. Nat Plants. 2019 09; 5(9):965-979. Zhou Y, Minio A, Massonnet M, Solares E, Lv Y, Beridze T, Cantu D, Gaut BS. PMID: 31506640.
      View in: PubMed   Mentions: 122     Fields:    Translation:Animals
    40. The genome-wide dynamics of purging during selfing in maize. Nat Plants. 2019 09; 5(9):980-990. Roessler K, Muyle A, Diez CM, Gaut GRJ, Bousios A, Stitzer MC, Seymour DK, Doebley JF, Liu Q, Gaut BS. PMID: 31477888.
      View in: PubMed   Mentions: 24     Fields:    Translation:Animals
    41. Living with Two Genomes: Grafting and Its Implications for Plant Genome-to-Genome Interactions, Phenotypic Variation, and Evolution. Annu Rev Genet. 2019 12 03; 53:195-215. Gaut BS, Miller AJ, Seymour DK. PMID: 31424971.
      View in: PubMed   Mentions: 29     Fields:    Translation:Animals
    42. Multiple introductions and population structure during the rapid expansion of the invasive Sahara mustard (Brassica tournefortii). Ecol Evol. 2019 Jul; 9(14):7928-7941. Winkler DE, Chapin KJ, François O, Garmon JD, Gaut BS, Huxman TE. PMID: 31380061; PMCID: PMC6662425.
      View in: PubMed   Mentions: 7  
    43. Divergence with gene flow is driven by local adaptation to temperature and soil phosphorus concentration in teosinte subspecies (Zea mays parviglumis and Zea mays mexicana). Mol Ecol. 2019 06; 28(11):2814-2830. Aguirre-Liguori JA, Gaut BS, Jaramillo-Correa JP, Tenaillon MI, Montes-Hernández S, García-Oliva F, Hearne SJ, Eguiarte LE. PMID: 30980686.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    44. Loss of Gene Body Methylation in Eutrema salsugineum Is Associated with Reduced Gene Expression. Mol Biol Evol. 2019 01 01; 36(1):155-158. Muyle A, Gaut BS. PMID: 30398664; PMCID: PMC6340462.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    45. Demography and its effects on genomic variation in crop domestication. Nat Plants. 2018 08; 4(8):512-520. Gaut BS, Seymour DK, Liu Q, Zhou Y. PMID: 30061748.
      View in: PubMed   Mentions: 84     Fields:    Translation:Animals
    46. Modeling Interactions between Transposable Elements and the Plant Epigenetic Response: A Surprising Reliance on Element Retention. Genome Biol Evol. 2018 03 01; 10(3):803-815. Roessler K, Bousios A, Meca E, Gaut BS. PMID: 29608716; PMCID: PMC5841382.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    47. A convergent outcome: small genomes in mangroves. New Phytol. 2018 01; 217(1):5-7. Gaut BS. PMID: 29193222.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    48. Seasonal Changes in a Maize-Based Polyculture of Central Mexico Reshape the Co-occurrence Networks of Soil Bacterial Communities. Front Microbiol. 2017; 8:2478. Rebollar EA, Sandoval-Castellanos E, Roessler K, Gaut BS, Alcaraz LD, Benítez M, Escalante AE. PMID: 29326663; PMCID: PMC5741676.
      View in: PubMed   Mentions: 12  
    49. Adaptive Mutations in RNA Polymerase and the Transcriptional Terminator Rho Have Similar Effects on Escherichia coli Gene Expression. Mol Biol Evol. 2017 Nov 01; 34(11):2839-2855. González-González A, Hug SM, Rodríguez-Verdugo A, Patel JS, Gaut BS. PMID: 28961910; PMCID: PMC5815632.
      View in: PubMed   Mentions: 15     Fields:    Translation:Cells
    50. Evolutionary genomics of grape (Vitis vinifera ssp. vinifera) domestication. Proc Natl Acad Sci U S A. 2017 10 31; 114(44):11715-11720. Zhou Y, Massonnet M, Sanjak JS, Cantu D, Gaut BS. PMID: 29042518; PMCID: PMC5676911.
      View in: PubMed   Mentions: 123     Fields:    Translation:Animals
    51. Connecting genomic patterns of local adaptation and niche suitability in teosintes. Mol Ecol. 2017 Aug; 26(16):4226-4240. Aguirre-Liguori JA, Tenaillon MI, Vázquez-Lobo A, Gaut BS, Jaramillo-Correa JP, Montes-Hernandez S, Souza V, Eguiarte LE. PMID: 28612956.
      View in: PubMed   Mentions: 21     Fields:    Translation:Animals
    52. The Evolutionary Dynamics of Orthologs That Shift in Gene Body Methylation between Arabidopsis Species. Mol Biol Evol. 2017 06 01; 34(6):1479-1491. Takuno S, Seymour DK, Gaut BS. PMID: 28333248.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    53. How Single Molecule Real-Time Sequencing and Haplotype Phasing Have Enabled Reference-Grade Diploid Genome Assembly of Wine Grapes. Front Plant Sci. 2017; 8:826. Minio A, Lin J, Gaut BS, Cantu D. PMID: 28567052; PMCID: PMC5434136.
      View in: PubMed   Mentions: 23  
    54. Deleterious Variants in Asian Rice and the Potential Cost of Domestication. Mol Biol Evol. 2017 04 01; 34(4):908-924. Liu Q, Zhou Y, Morrell PL, Gaut BS. PMID: 28087781.
      View in: PubMed   Mentions: 49     Fields:    Translation:Animals
    55. Considerations and complications of mapping small RNA high-throughput data to transposable elements. Mob DNA. 2017; 8:3. Bousios A, Gaut BS, Darzentas N. PMID: 28228849; PMCID: PMC5311732.
      View in: PubMed   Mentions: 5  
    56. CG Methylation Covaries with Differential Gene Expression between Leaf and Floral Bud Tissues of Brachypodium distachyon. PLoS One. 2016; 11(3):e0150002. Roessler K, Takuno S, Gaut BS. PMID: 26950546; PMCID: PMC4780816.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    57. Mechanistic and evolutionary questions about epigenetic conflicts between transposable elements and their plant hosts. Curr Opin Plant Biol. 2016 04; 30:123-33. Bousios A, Gaut BS. PMID: 26950253.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
    58. Evolutionary patterns of genic DNA methylation vary across land plants. Nat Plants. 2016 01 25; 2:15222. Takuno S, Ran JH, Gaut BS. PMID: 27249194.
      View in: PubMed   Mentions: 94     Fields:    Translation:AnimalsCells
    59. A role for palindromic structures in the cis-region of maize Sirevirus LTRs in transposable element evolution and host epigenetic response. Genome Res. 2016 Feb; 26(2):226-37. Bousios A, Diez CM, Takuno S, Bystry V, Darzentas N, Gaut BS. PMID: 26631490; PMCID: PMC4728375.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    60. The jury may be out, but it is important that it deliberates: a response to Besnard and Rubio de Casas about olive domestication. New Phytol. 2016 Jan; 209(2):471-3. Díez CM, Gaut BS. PMID: 26599353.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    61. Genomics and the Contrasting Dynamics of Annual and Perennial Domestication. Trends Genet. 2015 Dec; 31(12):709-719. Gaut BS, Díez CM, Morrell PL. PMID: 26603610.
      View in: PubMed   Mentions: 57     Fields:    Translation:Animals
    62. First-Step Mutations during Adaptation Restore the Expression of Hundreds of Genes. Mol Biol Evol. 2016 Jan; 33(1):25-39. Rodríguez-Verdugo A, Tenaillon O, Gaut BS. PMID: 26500250; PMCID: PMC4693981.
      View in: PubMed   Mentions: 39     Fields:    Translation:Cells
    63. The phenotypic signature of adaptation to thermal stress in Escherichia coli. BMC Evol Biol. 2015 Sep 02; 15:177. Hug SM, Gaut BS. PMID: 26329930; PMCID: PMC4557228.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
    64. Evolution Is an Experiment: Assessing Parallelism in Crop Domestication and Experimental Evolution: (Nei Lecture, SMBE 2014, Puerto Rico). Mol Biol Evol. 2015 Jul; 32(7):1661-71. Gaut BS. PMID: 26012904.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    65. Olive domestication and diversification in the Mediterranean Basin. New Phytol. 2015 Apr; 206(1):436-447. Diez CM, Trujillo I, Martinez-Urdiroz N, Barranco D, Rallo L, Marfil P, Gaut BS. PMID: 25420413.
      View in: PubMed   Mentions: 80     Fields:    Translation:AnimalsCells
    66. Different tradeoffs result from alternate genetic adaptations to a common environment. Proc Natl Acad Sci U S A. 2014 Aug 19; 111(33):12121-6. Rodríguez-Verdugo A, Carrillo-Cisneros D, González-González A, Gaut BS, Bennett AF. PMID: 25092325; PMCID: PMC4143048.
      View in: PubMed   Mentions: 44     Fields:    Translation:Cells
    67. The complex domestication history of the common bean. Nat Genet. 2014 Jul; 46(7):663-4. Gaut BS. PMID: 24965727.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimals
    68. Three groups of transposable elements with contrasting copy number dynamics and host responses in the maize (Zea mays ssp. mays) genome. PLoS Genet. 2014 Apr; 10(4):e1004298. Diez CM, Meca E, Tenaillon MI, Gaut BS. PMID: 24743518; PMCID: PMC3990487.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    69. The reproducibility of adaptation in the light of experimental evolution with whole genome sequencing. Adv Exp Med Biol. 2014; 781:211-31. Achaz G, Rodriguez-Verdugo A, Gaut BS, Tenaillon O. PMID: 24277302.
      View in: PubMed   Mentions: 21     Fields:    
    70. Epigenetics and plant genome evolution. Curr Opin Plant Biol. 2014 Apr; 18:1-8. Diez CM, Roessler K, Gaut BS. PMID: 24424204.
      View in: PubMed   Mentions: 42     Fields:    Translation:Cells
    71. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nat Genet. 2013 Jul; 45(7):831-5. Slotte T, Hazzouri KM, Ågren JA, Koenig D, Maumus F, Guo YL, Steige K, Platts AE, Escobar JS, Newman LK, Wang W, Mandáková T, Vello E, Smith LM, Henz SR, Steffen J, Takuno S, Brandvain Y, Coop G, Andolfatto P, Hu TT, Blanchette M, Clark RM, Quesneville H, Nordborg M, Gaut BS, Lysak MA, Jenkins J, Grimwood J, Chapman J, Prochnik S, Shu S, Rokhsar D, Schmutz J, Weigel D, Wright SI. PMID: 23749190.
      View in: PubMed   Mentions: 171     Fields:    Translation:Animals
    72. Genome size variation in wild and cultivated maize along altitudinal gradients. New Phytol. 2013 Jul; 199(1):264-276. Díez CM, Gaut BS, Meca E, Scheinvar E, Montes-Hernandez S, Eguiarte LE, Tenaillon MI. PMID: 23550586; PMCID: PMC4119021.
      View in: PubMed   Mentions: 43     Fields:    Translation:Animals
    73. Evolution of Escherichia coli rifampicin resistance in an antibiotic-free environment during thermal stress. BMC Evol Biol. 2013 Feb 22; 13:50. Rodríguez-Verdugo A, Gaut BS, Tenaillon O. PMID: 23433244; PMCID: PMC3598500.
      View in: PubMed   Mentions: 61     Fields:    Translation:Cells
    74. Gene body methylation is conserved between plant orthologs and is of evolutionary consequence. Proc Natl Acad Sci U S A. 2013 Jan 29; 110(5):1797-802. Takuno S, Gaut BS. PMID: 23319627; PMCID: PMC3562806.
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    75. Inferences from the historical distribution of wild and domesticated maize provide ecological and evolutionary insight. PLoS One. 2012; 7(11):e47659. Hufford MB, Martínez-Meyer E, Gaut BS, Eguiarte LE, Tenaillon MI. PMID: 23155371; PMCID: PMC3498274.
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    76. Maize HapMap2 identifies extant variation from a genome in flux. Nat Genet. 2012 Jun 03; 44(7):803-7. Chia JM, Song C, Bradbury PJ, Costich D, de Leon N, Doebley J, Elshire RJ, Gaut B, Geller L, Glaubitz JC, Gore M, Guill KE, Holland J, Hufford MB, Lai J, Li M, Liu X, Lu Y, McCombie R, Nelson R, Poland J, Prasanna BM, Pyhäjärvi T, Rong T, Sekhon RS, Sun Q, Tenaillon MI, Tian F, Wang J, Xu X, Zhang Z, Kaeppler SM, Ross-Ibarra J, McMullen MD, Buckler ES, Zhang G, Xu Y, Ware D. PMID: 22660545.
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    77. Recent retrotransposon insertions are methylated and phylogenetically clustered in japonica rice (Oryza sativa spp. japonica). Mol Biol Evol. 2012 Oct; 29(10):3193-203. Vonholdt BM, Takuno S, Gaut BS. PMID: 22593226.
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    78. Arabidopsis thaliana as a model for the genetics of local adaptation. Nat Genet. 2012 Jan 27; 44(2):115-6. Gaut B. PMID: 22281764.
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    79. The molecular diversity of adaptive convergence. Science. 2012 Jan 27; 335(6067):457-61. Tenaillon O, Rodríguez-Verdugo A, Gaut RL, McDonald P, Bennett AF, Long AD, Gaut BS. PMID: 22282810.
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    80. Retrogenes in rice (Oryza sativa L. ssp. japonica) exhibit correlated expression with their source genes. Genome Biol Evol. 2011; 3:1357-68. Sakai H, Mizuno H, Kawahara Y, Wakimoto H, Ikawa H, Kawahigashi H, Kanamori H, Matsumoto T, Itoh T, Gaut BS. PMID: 22042334; PMCID: PMC3240961.
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    81. Mapping salinity tolerance during Arabidopsis thaliana germination and seedling growth. PLoS One. 2011; 6(8):e22832. DeRose-Wilson L, Gaut BS. PMID: 21857956; PMCID: PMC3155519.
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    82. Body-methylated genes in Arabidopsis thaliana are functionally important and evolve slowly. Mol Biol Evol. 2012 Jan; 29(1):219-27. Takuno S, Gaut BS. PMID: 21813466.
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    83. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet. 2011 May; 43(5):476-81. Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J, Gundlach H, Haberer G, Hollister JD, Ossowski S, Ottilar RP, Salamov AA, Schneeberger K, Spannagl M, Wang X, Yang L, Nasrallah ME, Bergelson J, Carrington JC, Gaut BS, Schmutz J, Mayer KF, Van de Peer Y, Grigoriev IV, Nordborg M, Weigel D, Guo YL. PMID: 21478890; PMCID: PMC3083492.
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    84. Factors that contribute to variation in evolutionary rate among Arabidopsis genes. Mol Biol Evol. 2011 Aug; 28(8):2359-69. Yang L, Gaut BS. PMID: 21389272.
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    85. Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians. Genome Biol Evol. 2011; 3:219-29. Tenaillon MI, Hufford MB, Gaut BS, Ross-Ibarra J. PMID: 21296765; PMCID: PMC3068001.
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    86. Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata. Proc Natl Acad Sci U S A. 2011 Feb 08; 108(6):2322-7. Hollister JD, Smith LM, Guo YL, Ott F, Weigel D, Gaut BS. PMID: 21252301; PMCID: PMC3038775.
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    87. Lowly expressed genes in Arabidopsis thaliana bear the signature of possible pseudogenization by promoter degradation. Mol Biol Evol. 2011 Mar; 28(3):1193-203. Yang L, Takuno S, Waters ER, Gaut BS. PMID: 21059790.
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    88. Genetic diversity in domesticated soybean (Glycine max) and its wild progenitor (Glycine soja) for simple sequence repeat and single-nucleotide polymorphism loci. New Phytol. 2010 Oct; 188(1):242-53. Li YH, Li W, Zhang C, Yang L, Chang RZ, Gaut BS, Qiu LJ. PMID: 20618914.
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    89. A triptych of the evolution of plant transposable elements. Trends Plant Sci. 2010 Aug; 15(8):471-8. Tenaillon MI, Hollister JD, Gaut BS. PMID: 20541961.
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    90. Fine scale genetic structure in the wild ancestor of maize (Zea mays ssp. parviglumis). Mol Ecol. 2010 Mar; 19(6):1162-73. Van Heerwaarden J, Ross-Ibarra J, Doebley J, Glaubitz JC, González Jde J, Gaut BS, Eguiarte LE. PMID: 20163543.
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    91. The evolution of transposable elements in natural populations of self-fertilizing Arabidopsis thaliana and its outcrossing relative Arabidopsis lyrata. BMC Evol Biol. 2010 Jan 12; 10:10. Lockton S, Gaut BS. PMID: 20067644; PMCID: PMC2837042.
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    92. Indel-associated mutation rate varies with mating system in flowering plants. Mol Biol Evol. 2010 Feb; 27(2):409-16. Hollister JD, Ross-Ibarra J, Gaut BS. PMID: 19825943.
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    93. Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons? Genome Res. 2009 Dec; 19(12):2221-30. Tian Z, Rizzon C, Du J, Zhu L, Bennetzen JL, Jackson SA, Gaut BS, Ma J. PMID: 19789376; PMCID: PMC2792168.
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    94. Selection on grain shattering genes and rates of rice domestication. New Phytol. 2009 Nov; 184(3):708-720. Zhang LB, Zhu Q, Wu ZQ, Ross-Ibarra J, Gaut BS, Ge S, Sang T. PMID: 19674325.
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    95. Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression. Genome Res. 2009 Aug; 19(8):1419-28. Hollister JD, Gaut BS. PMID: 19478138; PMCID: PMC2720190.
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    96. Historical divergence and gene flow in the genus Zea. Genetics. 2009 Apr; 181(4):1399-413. Ross-Ibarra J, Tenaillon M, Gaut BS. PMID: 19153259; PMCID: PMC2666508.
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    97. The contribution of transposable elements to expressed coding sequence in Arabidopsis thaliana. J Mol Evol. 2009 Jan; 68(1):80-9. Lockton S, Gaut BS. PMID: 19125217.
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    98. Multiple domestications do not appear monophyletic. Proc Natl Acad Sci U S A. 2008 Dec 09; 105(49):E105; author reply E106. Ross-Ibarra J, Gaut BS. PMID: 19057016; PMCID: PMC2614810.
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    99. A comparative computational analysis of nonautonomous helitron elements between maize and rice. BMC Genomics. 2008 Oct 08; 9:467. Sweredoski M, DeRose-Wilson L, Gaut BS. PMID: 18842139; PMCID: PMC2575219.
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    100. Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata. Proc Natl Acad Sci U S A. 2008 Sep 16; 105(37):13965-70. Lockton S, Ross-Ibarra J, Gaut BS. PMID: 18772373; PMCID: PMC2544562.
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    101. Patterns of polymorphism and demographic history in natural populations of Arabidopsis lyrata. PLoS One. 2008 Jun 11; 3(6):e2411. Ross-Ibarra J, Wright SI, Foxe JP, Kawabe A, DeRose-Wilson L, Gos G, Charlesworth D, Gaut BS. PMID: 18545707; PMCID: PMC2408968.
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    102. Selection on major components of angiosperm genomes. Science. 2008 Apr 25; 320(5875):484-6. Gaut BS, Ross-Ibarra J. PMID: 18436777.
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    103. Selection on amino acid substitutions in Arabidopsis. Mol Biol Evol. 2008 Jul; 25(7):1375-83. Foxe JP, Dar VU, Zheng H, Nordborg M, Gaut BS, Wright SI. PMID: 18390851; PMCID: PMC2878001.
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    104. A weak effect of background selection on trinucleotide microsatellites in maize. J Hered. 2008 Jan-Feb; 99(1):45-55. Thuillet AC, Tenaillon MI, Anderson LK, Mitchell SE, Kresovich S, Stack SM, Gaut B, Doebley J. PMID: 17962226.
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    105. Linkage mapping of domestication loci in a large maize teosinte backcross resource. Genetics. 2007 Nov; 177(3):1915-28. Briggs WH, McMullen MD, Gaut BS, Doebley J. PMID: 17947434; PMCID: PMC2147989.
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    106. Population and evolutionary dynamics of Helitron transposable elements in Arabidopsis thaliana. Mol Biol Evol. 2007 Nov; 24(11):2515-24. Hollister JD, Gaut BS. PMID: 17890239.
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    107. Patterns of selection and tissue-specific expression among maize domestication and crop improvement loci. Plant Physiol. 2007 Jul; 144(3):1642-53. Hufford KM, Canaran P, Ware DH, McMullen MD, Gaut BS. PMID: 17496114; PMCID: PMC1914116.
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    108. Plant domestication, a unique opportunity to identify the genetic basis of adaptation. Proc Natl Acad Sci U S A. 2007 May 15; 104 Suppl 1:8641-8. Ross-Ibarra J, Morrell PL, Gaut BS. PMID: 17494757; PMCID: PMC1876441.
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    109. Transcription-related mutations and GC content drive variation in nucleotide substitution rates across the genomes of Arabidopsis thaliana and Arabidopsis lyrata. BMC Evol Biol. 2007 Apr 23; 7:66. DeRose-Wilson LJ, Gaut BS. PMID: 17451608; PMCID: PMC1865379.
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    110. Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice. Mol Biol Evol. 2007 Mar; 24(3):875-88. Zhu Q, Zheng X, Luo J, Gaut BS, Ge S. PMID: 17218640.
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    111. Spatial scale of local adaptation and population genetic structure in a miniature succulent, Argyroderma pearsonii. New Phytol. 2007; 174(4):904-914. Ellis AG, Weis AE, Gaut BS. PMID: 17504471.
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    112. Recombination: an underappreciated factor in the evolution of plant genomes. Nat Rev Genet. 2007 Jan; 8(1):77-84. Gaut BS, Wright SI, Rizzon C, Dvorak J, Anderson LK. PMID: 17173059.
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    113. The molecular genetics of crop domestication. Cell. 2006 Dec 29; 127(7):1309-21. Doebley JF, Gaut BS, Smith BD. PMID: 17190597.
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    114. Phylogenetic analysis, genome evolution and the rate of gene gain in the Herpesviridae. Mol Phylogenet Evol. 2007 Jun; 43(3):1066-75. Wang N, Baldi PF, Gaut BS. PMID: 17196839.
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    115. Testing for effects of recombination rate on nucleotide diversity in natural populations of Arabidopsis lyrata. Genetics. 2006 Nov; 174(3):1421-30. Wright SI, Foxe JP, DeRose-Wilson L, Kawabe A, Looseley M, Gaut BS, Charlesworth D. PMID: 16951057; PMCID: PMC1667078.
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    116. Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice. PLoS Comput Biol. 2006 Sep 01; 2(9):e115. Rizzon C, Ponger L, Gaut BS. PMID: 16948529; PMCID: PMC1557586.
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    117. Adaptive selection of mitochondrial complex I subunits during primate radiation. Gene. 2006 Aug 15; 378:11-8. Mishmar D, Ruiz-Pesini E, Mondragon-Palomino M, Procaccio V, Gaut B, Wallace DC. PMID: 16828987.
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    118. Timing and rate of speciation in Agave (Agavaceae). Proc Natl Acad Sci U S A. 2006 Jun 13; 103(24):9124-9. Good-Avila SV, Souza V, Gaut BS, Eguiarte LE. PMID: 16757559; PMCID: PMC1482577.
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    119. Molecular and functional diversity of maize. Curr Opin Plant Biol. 2006 Apr; 9(2):172-6. Buckler ES, Gaut BS, McMullen MD. PMID: 16459128.
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    120. Panzea: a database and resource for molecular and functional diversity in the maize genome. Nucleic Acids Res. 2006 Jan 01; 34(Database issue):D752-7. Zhao W, Canaran P, Jurkuta R, Fulton T, Glaubitz J, Buckler E, Doebley J, Gaut B, Goodman M, Holland J, Kresovich S, McMullen M, Stein L, Ware D. PMID: 16381974; PMCID: PMC1347374.
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    121. Evolutionary radiation of "stone plants" in the genus Argyroderma (Aizoaceae): unraveling the effects of landscape, habitat, and flowering time. Evolution. 2006 Jan; 60(1):39-55. Ellis AG, Weis AE, Gaut BS. PMID: 16568630.
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    122. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet. 2006 Feb; 38(2):203-8. Yu J, Pressoir G, Briggs WH, Vroh Bi I, Yamasaki M, Doebley JF, McMullen MD, Gaut BS, Nielsen DM, Holland JB, Kresovich S, Buckler ES. PMID: 16380716.
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    123. Uneven distribution of expressed sequence tag loci on maize pachytene chromosomes. Genome Res. 2006 Jan; 16(1):115-22. Anderson LK, Lai A, Stack SM, Rizzon C, Gaut BS. PMID: 16339046; PMCID: PMC1356135.
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    124. A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement. Plant Cell. 2005 Nov; 17(11):2859-72. Yamasaki M, Tenaillon MI, Bi IV, Schroeder SG, Sanchez-Villeda H, Doebley JF, Gaut BS, McMullen MD. PMID: 16227451; PMCID: PMC1276015.
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    125. Variation in mutation dynamics across the maize genome as a function of regional and flanking base composition. Genetics. 2006 Jan; 172(1):569-77. Morton BR, Bi IV, McMullen MD, Gaut BS. PMID: 16219784; PMCID: PMC1456184.
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    126. Gene conversion and the evolution of three leucine-rich repeat gene families in Arabidopsis thaliana. Mol Biol Evol. 2005 Dec; 22(12):2444-56. Mondragon-Palomino M, Gaut BS. PMID: 16120808.
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    127. The effects of artificial selection on the maize genome. Science. 2005 May 27; 308(5726):1310-4. Wright SI, Bi IV, Schroeder SG, Yamasaki M, Doebley JF, McMullen MD, Gaut BS. PMID: 15919994.
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    128. Plant conserved non-coding sequences and paralogue evolution. Trends Genet. 2005 Jan; 21(1):60-5. Lockton S, Gaut BS. PMID: 15680516.
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    129. Statistical detection of chromosomal homology using shared-gene density alone. Bioinformatics. 2005 Apr 15; 21(8):1339-48. Hampson SE, Gaut BS, Baldi P. PMID: 15585535.
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    130. Molecular population genetics and the search for adaptive evolution in plants. Mol Biol Evol. 2005 Mar; 22(3):506-19. Wright SI, Gaut BS. PMID: 15525701.
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    131. Population genetic evidence for rapid changes in intraspecific diversity and allelic cycling of a specialist defense gene in Zea. Genetics. 2004 Sep; 168(1):425-34. Tiffin P, Hacker R, Gaut BS. PMID: 15454554; PMCID: PMC1448113.
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    132. Selection versus demography: a multilocus investigation of the domestication process in maize. Mol Biol Evol. 2004 Jul; 21(7):1214-25. Tenaillon MI, U'Ren J, Tenaillon O, Gaut BS. PMID: 15014173.
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    133. Extensive gene gain associated with adaptive evolution of poxviruses. Proc Natl Acad Sci U S A. 2003 Dec 23; 100(26):15655-60. McLysaght A, Baldi PF, Gaut BS. PMID: 14660798; PMCID: PMC307623.
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    134. Does recombination shape the distribution and evolution of tandemly arrayed genes (TAGs) in the Arabidopsis thaliana genome? Genome Res. 2003 Dec; 13(12):2533-40. Zhang L, Gaut BS. PMID: 14656961; PMCID: PMC403795.
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    135. The lowdown on linkage disequilibrium. Plant Cell. 2003 Jul; 15(7):1502-6. Gaut BS, Long AD. PMID: 12837942; PMCID: PMC526043.
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    136. LineUp: statistical detection of chromosomal homology with application to plant comparative genomics. Genome Res. 2003 May; 13(5):999-1010. Hampson S, McLysaght A, Gaut B, Baldi P. PMID: 12695327; PMCID: PMC430881.
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    137. Patterns of diversity and recombination along chromosome 1 of maize (Zea mays ssp. mays L.). Genetics. 2002 Nov; 162(3):1401-13. Tenaillon MI, Sawkins MC, Anderson LK, Stack SM, Doebley J, Gaut BS. PMID: 12454083; PMCID: PMC1462344.
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    138. Population genetics of duplicated disease-defense genes, hm1 and hm2, in maize (Zea mays ssp. mays L.) and its wild ancestor (Zea mays ssp. parviglumis). Genetics. 2002 Oct; 162(2):851-60. Zhang L, Peek AS, Dunams D, Gaut BS. PMID: 12399395; PMCID: PMC1462307.
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    139. Genetic diversity and selection in the maize starch pathway. Proc Natl Acad Sci U S A. 2002 Oct 01; 99(20):12959-62. Whitt SR, Wilson LM, Tenaillon MI, Gaut BS, Buckler ES. PMID: 12244216; PMCID: PMC130568.
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    140. Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana. Mol Biol Evol. 2002 Sep; 19(9):1464-73. Zhang L, Vision TJ, Gaut BS. PMID: 12200474.
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    141. Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana. Genome Res. 2002 Sep; 12(9):1305-15. Mondragón-Palomino M, Meyers BC, Michelmore RW, Gaut BS. PMID: 12213767; PMCID: PMC186657.
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    142. Molecular evolution of the wound-induced serine protease inhibitor wip1 in Zea and related genera. Mol Biol Evol. 2001 Nov; 18(11):2092-101. Tiffin P, Gaut BS. PMID: 11606705.
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    143. Gene duplication and evolution. Science. 2001 Aug 31; 293(5535):1551. Zhang L, Gaut BS, Vision TJ. PMID: 11550701.
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    144. Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc Natl Acad Sci U S A. 2001 Jul 31; 98(16):9161-6. Tenaillon MI, Sawkins MC, Long AD, Gaut RL, Doebley JF, Gaut BS. PMID: 11470895; PMCID: PMC55390.
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    145. Sequence diversity in the tetraploid Zea perennis and the closely related diploid Z. diploperennis: insights from four nuclear loci. Genetics. 2001 May; 158(1):401-12. Tiffin P, Gaut BS. PMID: 11333248; PMCID: PMC1461631.
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    146. A survey of the molecular evolutionary dynamics of twenty-five multigene families from four grass taxa. J Mol Evol. 2001 Feb; 52(2):144-56. Zhang L, Pond SK, Gaut BS. PMID: 11231894.
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    147. The interaction of protein structure, selection, and recombination on the evolution of the type-1 fimbrial major subunit (fimA) from Escherichia coli. J Mol Evol. 2001 Feb; 52(2):193-204. Peek AS, Souza V, Eguiarte LE, Gaut BS. PMID: 11244580.
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    148. Patterns of chromosomal duplication in maize and their implications for comparative maps of the grasses. Genome Res. 2001 Jan; 11(1):55-66. Gaut BS. PMID: 11156615; PMCID: PMC311014.
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    149. A golden age defined. Med J Aust. 2001 Jan 01; 174(1):8. Gaut B. PMID: 11219801.
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    150. Maize as a model for the evolution of plant nuclear genomes. Proc Natl Acad Sci U S A. 2000 Jun 20; 97(13):7008-15. Gaut BS, Le Thierry d'Ennequin M, Peek AS, Sawkins MC. PMID: 10860964; PMCID: PMC34377.
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    151. Neutral and nonneutral mitochondrial genetic variation in deep-sea clams from the family vesicomyidae. J Mol Evol. 2000 Feb; 50(2):141-53. Peek AS, Gaut BS, Feldman RA, Barry JP, Kochevar RE, Lutz RA, Vrijenhoek RC. PMID: 10684348.
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    152. Evolution of genes and taxa: a primer. Plant Mol Biol. 2000 Jan; 42(1):1-23. Doyle JJ, Gaut BS. PMID: 10688128.
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    153. Patterns of genetic diversification within the Adh gene family in the grasses (Poaceae). Mol Biol Evol. 1999 Aug; 16(8):1086-97. Gaut BS, Peek AS, Morton BR, Clegg MT. PMID: 10474904.
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    154. Receptor-like genes in the major resistance locus of lettuce are subject to divergent selection. Plant Cell. 1998 Nov; 10(11):1833-46. Meyers BC, Shen KA, Rohani P, Gaut BS, Michelmore RW. PMID: 9811792; PMCID: PMC143952.
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    155. Accelerated evolutionary rate in sulfur-oxidizing endosymbiotic bacteria associated with the mode of symbiont transmission. Mol Biol Evol. 1998 Nov; 15(11):1514-23. Peek AS, Vrijenhoek RC, Gaut BS. PMID: 12572615.
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    156. Speciation and domestication in maize and its wild relatives: evidence from the globulin-1 gene. Genetics. 1998 Oct; 150(2):863-72. Hilton H, Gaut BS. PMID: 9755214; PMCID: PMC1460357.
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    157. The paleontology of intergene retrotransposons of maize. Nat Genet. 1998 Sep; 20(1):43-5. SanMiguel P, Gaut BS, Tikhonov A, Nakajima Y, Bennetzen JL. PMID: 9731528.
      View in: PubMed   Mentions: 438     Fields:    Translation:AnimalsCells
    158. Xa21D encodes a receptor-like molecule with a leucine-rich repeat domain that determines race-specific recognition and is subject to adaptive evolution. Plant Cell. 1998 May; 10(5):765-79. Wang GL, Ruan DL, Song WY, Sideris S, Chen L, Pi LY, Zhang S, Zhang Z, Fauquet C, Gaut BS, Whalen MC, Ronald PC. PMID: 9596635; PMCID: PMC144027.
      View in: PubMed   Mentions: 109     Fields:    Translation:AnimalsCells
    159. Investigation of the bottleneck leading to the domestication of maize. Proc Natl Acad Sci U S A. 1998 Apr 14; 95(8):4441-6. Eyre-Walker A, Gaut RL, Hilton H, Feldman DL, Gaut BS. PMID: 9539756; PMCID: PMC22508.
      View in: PubMed   Mentions: 136     Fields:    Translation:AnimalsCells
    160. Comparisons of the molecular evolutionary process at rbcL and ndhF in the grass family (Poaceae). Mol Biol Evol. 1997 Jul; 14(7):769-77. Gaut BS, Clark LG, Wendel JF, Muse SV. PMID: 9214750.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    161. DNA sequence evidence for the segmental allotetraploid origin of maize. Proc Natl Acad Sci U S A. 1997 Jun 24; 94(13):6809-14. Gaut BS, Doebley JF. PMID: 11038553; PMCID: PMC21240.
      View in: PubMed   Mentions: 248     Fields:    
    162. Comparing patterns of nucleotide substitution rates among chloroplast loci using the relative ratio test. Genetics. 1997 May; 146(1):393-9. Muse SV, Gaut BS. PMID: 9136027; PMCID: PMC1207954.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    163. Correlated rates of synonymous site evolution across plant genomes. Mol Biol Evol. 1997 Apr; 14(4):455-60. Eyre-Walker A, Gaut BS. PMID: 9100375.
      View in: PubMed   Mentions: 29     Fields:    Translation:Animals
    164. Evolution of alcohol dehydrogenase genes in the palm and grass families. Proc Natl Acad Sci U S A. 1996 Oct 15; 93(21):11735-9. Morton BR, Gaut BS, Clegg MT. PMID: 8876206; PMCID: PMC38127.
      View in: PubMed   Mentions: 17     Fields:    Translation:Animals
    165. Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL. Proc Natl Acad Sci U S A. 1996 Sep 17; 93(19):10274-9. Gaut BS, Morton BR, McCaig BC, Clegg MT. PMID: 8816790; PMCID: PMC38374.
      View in: PubMed   Mentions: 342     Fields:    Translation:AnimalsCells
    166. Evolution of anthocyanin biosynthesis in maize kernels: the role of regulatory and enzymatic loci. Genetics. 1996 Jul; 143(3):1395-407. Hanson MA, Gaut BS, Stec AO, Fuerstenberg SI, Goodman MM, Coe EH, Doebley JF. PMID: 8807310; PMCID: PMC1207407.
      View in: PubMed   Mentions: 52     Fields:    Translation:AnimalsCells
    167. When all else fails, read the instructions. Med J Aust. 1995 Jan 02; 162(1):6-7. Gaut B. PMID: 7845309.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    168. Success of maximum likelihood phylogeny inference in the four-taxon case. Mol Biol Evol. 1995 Jan; 12(1):152-62. Gaut BS, Lewis PO. PMID: 7877489.
      View in: PubMed   Mentions: 31     Fields:    
    169. A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome. Mol Biol Evol. 1994 Sep; 11(5):715-24. Muse SV, Gaut BS. PMID: 7968485.
      View in: PubMed   Mentions: 348     Fields:    Translation:AnimalsCells
    170. Rates and patterns of chloroplast DNA evolution. Proc Natl Acad Sci U S A. 1994 Jul 19; 91(15):6795-801. Clegg MT, Gaut BS, Learn GH, Morton BR. PMID: 8041699; PMCID: PMC44285.
      View in: PubMed   Mentions: 144     Fields:    Translation:AnimalsCells
    171. Detecting substitution-rate heterogeneity among regions of a nucleotide sequence. Mol Biol Evol. 1994 Jul; 11(4):620-9. Gaut BS, Weir BS. PMID: 8078401.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    172. World No-Tobacco Day. Med J Aust. 1994 May 16; 160(10):598-9. Gaut B. PMID: 8177100.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    173. Nucleotide polymorphism in the Adh1 locus of pearl millet (Pennisetum glaucum) (Poaceae). Genetics. 1993 Dec; 135(4):1091-7. Gaut BS, Clegg MT. PMID: 7905843; PMCID: PMC1205740.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    174. Ethics, distribution and Oregon. Med J Aust. 1993 Aug 16; 159(4):280-1. Gaut B. PMID: 8412900.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    175. Molecular evolution of the Adh1 locus in the genus Zea. Proc Natl Acad Sci U S A. 1993 Jun 01; 90(11):5095-9. Gaut BS, Clegg MT. PMID: 8506356; PMCID: PMC46661.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    176. Relative rates of nucleotide substitution in the chloroplast genome. Mol Phylogenet Evol. 1993 Jun; 2(2):89-96. Gaut BS, Muse SV, Clegg MT. PMID: 8043149.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    177. Relative rates of nucleotide substitution at the rbcL locus of monocotyledonous plants. J Mol Evol. 1992 Oct; 35(4):292-303. Gaut BS, Muse SV, Clark WD, Clegg MT. PMID: 1404415.
      View in: PubMed   Mentions: 55     Fields:    Translation:Animals
    178. Molecular evolution of alcohol dehydrogenase 1 in members of the grass family. Proc Natl Acad Sci U S A. 1991 Mar 15; 88(6):2060-4. Gaut BS, Clegg MT. PMID: 2006143; PMCID: PMC51168.
      View in: PubMed   Mentions: 25     Fields:    Translation:AnimalsCells
    179. Chloroplast DNA evolves slowly in the palm family (Arecaceae). Mol Biol Evol. 1990 Jul; 7(4):303-14. Wilson MA, Gaut B, Clegg MT. PMID: 1974691.
      View in: PubMed   Mentions: 31     Fields:    Translation:AnimalsCells
    180. Organization and structure of the Qa genes of the major histocompatibility complex of the C3H mouse: implications for Qa function and class I evolution. EMBO J. 1989 Jun; 8(6):1749-59. Watts S, Davis AC, Gaut B, Wheeler C, Hill L, Goodenow RS. PMID: 2767053; PMCID: PMC401019.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
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