Brandon Stuart Gaut

Title(s)Professor and Associate Dean for Research and Innovation, Ecology & Evolutionary Biology
Address5205-B McGaugh Hall
Zot 2525
Irvine CA 92697
Phone(949) 824-2564
ORCID ORCID Icon0000-0002-1334-5556 Additional info
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Gene body methylation is under selection in Arabidopsis thaliana. Genetics. 2021 Jun 24; 218(2). Muyle A, Ross-Ibarra J, Seymour DK, Gaut BS. PMID: 33871638.
      View in: PubMed   Mentions: 1     Fields:    
    2. CHH Methylation Islands: A non-conserved feature of grass genomes that is positively associated with transposable elements but negatively associated with gene-body methylation. Genome Biol Evol. 2021 Jun 19. Martin GT, Seymour DK, Gaut BS. PMID: 34146109.
      View in: PubMed   Mentions:    Fields:    
    3. HapSolo: an optimization approach for removing secondary haplotigs during diploid genome assembly and scaffolding. BMC Bioinformatics. 2021 Jan 06; 22(1):9. Solares EA, Tao Y, Long AD, Gaut BS. PMID: 33407090.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    4. Evolutionary Genomics of Structural Variation in Asian Rice (Oryza sativa) Domestication. Mol Biol Evol. 2020 12 16; 37(12):3507-3524. Kou Y, Liao Y, Toivainen T, Lv Y, Tian X, Emerson JJ, Gaut BS, Zhou Y. PMID: 32681796.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    5. Sahara mustard as a major threat to desert biodiversity in the southwest United States and the need to integrate contemporary methods to understand its biology. Ecol Evol. 2020 Dec; 10(24):14453-14455. Winkler DE, Chapin KJ, Garmon JD, Gaut BS, Huxman TE. PMID: 33391728.
      View in: PubMed   Mentions:
    6. Gene capture by transposable elements leads to epigenetic conflict in maize. Mol Plant. 2021 02 01; 14(2):237-252. Muyle A, Seymour D, Darzentas N, Primetis E, Gaut BS, Bousios A. PMID: 33171302.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    7. Genetic Mutations That Drive Evolutionary Rescue to Lethal Temperature in Escherichia coli. Genome Biol Evol. 2020 11 03; 12(11):2029-2044. Batarseh TN, Hug SM, Batarseh SN, Gaut BS. PMID: 32785667.
      View in: PubMed   Mentions:    Fields:    
    8. Genomic evidence for recurrent genetic admixture during the domestication of Mediterranean olive trees (Olea europaea L.). BMC Biol. 2020 10 26; 18(1):148. Julca I, Marcet-Houben M, Cruz F, Gómez-Garrido J, Gaut BS, Díez CM, Gut IG, Alioto TS, Vargas P, Gabaldón T. PMID: 33100219.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    9. Large chromosomal variants drive adaptation in sunflowers. Nat Plants. 2020 07; 6(7):734-735. Zhou Y, Gaut BS. PMID: 32665649.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    10. The genetic basis of sex determination in grapes. Nat Commun. 2020 06 09; 11(1):2902. Massonnet M, Cochetel N, Minio A, Vondras AM, Lin J, Muyle A, Garcia JF, Zhou Y, Delledonne M, Riaz S, Figueroa-Balderas R, Gaut BS, Cantu D. PMID: 32518223.
      View in: PubMed   Mentions: 15     Fields:    Translation:Animals
    11. Phylogenetic Shifts in Gene Body Methylation Correlate with Gene Expression and Reflect Trait Conservation. Mol Biol Evol. 2020 Jan 01; 37(1):31-43. Seymour DK, Gaut BS. PMID: 31504743.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    12. The genomic diversification of grapevine clones. BMC Genomics. 2019 Dec 12; 20(1):972. Vondras AM, Minio A, Blanco-Ulate B, Figueroa-Balderas R, Penn MA, Zhou Y, Seymour D, Ye Z, Liang D, Espinoza LK, Anderson MM, Walker MA, Gaut B, Cantu D. PMID: 31830913.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    13. Maize transposable elements contribute to long non-coding RNAs that are regulatory hubs for abiotic stress response. BMC Genomics. 2019 Nov 15; 20(1):864. Lv Y, Hu F, Zhou Y, Wu F, Gaut BS. PMID: 31729949.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    14. EvoChromo: towards a synthesis of chromatin biology and evolution. Development. 2019 09 26; 146(19). Drinnenberg IA, Berger F, Elsässer SJ, Andersen PR, Ausió J, Bickmore WA, Blackwell AR, Erwin DH, Gahan JM, Gaut BS, Harvey ZH, Henikoff S, Kao JY, Kurdistani SK, Lemos B, Levine MT, Luger K, Malik HS, Martín-Durán JM, Peichel CL, Renfree MB, Rutowicz K, Sarkies P, Schmitz RJ, Technau U, Thornton JW, Warnecke T, Wolfe KH. PMID: 31558570.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    15. The population genetics of structural variants in grapevine domestication. Nat Plants. 2019 09; 5(9):965-979. Zhou Y, Minio A, Massonnet M, Solares E, Lv Y, Beridze T, Cantu D, Gaut BS. PMID: 31506640.
      View in: PubMed   Mentions: 35     Fields:    Translation:Animals
    16. The genome-wide dynamics of purging during selfing in maize. Nat Plants. 2019 09; 5(9):980-990. Roessler K, Muyle A, Diez CM, Gaut GRJ, Bousios A, Stitzer MC, Seymour DK, Doebley JF, Liu Q, Gaut BS. PMID: 31477888.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    17. Living with Two Genomes: Grafting and Its Implications for Plant Genome-to-Genome Interactions, Phenotypic Variation, and Evolution. Annu Rev Genet. 2019 12 03; 53:195-215. Gaut BS, Miller AJ, Seymour DK. PMID: 31424971.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    18. Multiple introductions and population structure during the rapid expansion of the invasive Sahara mustard (Brassica tournefortii). Ecol Evol. 2019 Jul; 9(14):7928-7941. Winkler DE, Chapin KJ, François O, Garmon JD, Gaut BS, Huxman TE. PMID: 31380061.
      View in: PubMed   Mentions:
    19. Divergence with gene flow is driven by local adaptation to temperature and soil phosphorus concentration in teosinte subspecies (Zea mays parviglumis and Zea mays mexicana). Mol Ecol. 2019 06; 28(11):2814-2830. Aguirre-Liguori JA, Gaut BS, Jaramillo-Correa JP, Tenaillon MI, Montes-Hernández S, García-Oliva F, Hearne SJ, Eguiarte LE. PMID: 30980686.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    20. Loss of Gene Body Methylation in Eutrema salsugineum Is Associated with Reduced Gene Expression. Mol Biol Evol. 2019 01 01; 36(1):155-158. Muyle A, Gaut BS. PMID: 30398664.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    21. Demography and its effects on genomic variation in crop domestication. Nat Plants. 2018 08; 4(8):512-520. Gaut BS, Seymour DK, Liu Q, Zhou Y. PMID: 30061748.
      View in: PubMed   Mentions: 26     Fields:    Translation:Animals
    22. Modeling Interactions between Transposable Elements and the Plant Epigenetic Response: A Surprising Reliance on Element Retention. Genome Biol Evol. 2018 03 01; 10(3):803-815. Roessler K, Bousios A, Meca E, Gaut BS. PMID: 29608716.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    23. A convergent outcome: small genomes in mangroves. . 2018 01; 217(1):5-7. Gaut BS. PMID: 29193222.
      View in: PubMed   Mentions:
    24. Seasonal Changes in a Maize-Based Polyculture of Central Mexico Reshape the Co-occurrence Networks of Soil Bacterial Communities. Front Microbiol. 2017; 8:2478. Rebollar EA, Sandoval-Castellanos E, Roessler K, Gaut BS, Alcaraz LD, Benítez M, Escalante AE. PMID: 29326663.
      View in: PubMed   Mentions:
    25. Adaptive Mutations in RNA Polymerase and the Transcriptional Terminator Rho Have Similar Effects on Escherichia coli Gene Expression. Mol Biol Evol. 2017 Nov 01; 34(11):2839-2855. González-González A, Hug SM, Rodríguez-Verdugo A, Patel JS, Gaut BS. PMID: 28961910.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    26. Evolutionary genomics of grape (Vitis vinifera ssp. vinifera) domestication. Proc Natl Acad Sci U S A. 2017 10 31; 114(44):11715-11720. Zhou Y, Massonnet M, Sanjak JS, Cantu D, Gaut BS. PMID: 29042518.
      View in: PubMed   Mentions: 62     Fields:    Translation:Animals
    27. The Evolutionary Dynamics of Orthologs That Shift in Gene Body Methylation between Arabidopsis Species. Mol Biol Evol. 2017 06 01; 34(6):1479-1491. Takuno S, Seymour DK, Gaut BS. PMID: 28333248.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    28. How Single Molecule Real-Time Sequencing and Haplotype Phasing Have Enabled Reference-Grade Diploid Genome Assembly of Wine Grapes. Front Plant Sci. 2017; 8:826. Minio A, Lin J, Gaut BS, Cantu D. PMID: 28567052.
      View in: PubMed   Mentions:
    29. Deleterious Variants in Asian Rice and the Potential Cost of Domestication. Mol Biol Evol. 2017 04 01; 34(4):908-924. Liu Q, Zhou Y, Morrell PL, Gaut BS. PMID: 28087781.
      View in: PubMed   Mentions: 21     Fields:    Translation:Animals
    30. Considerations and complications of mapping small RNA high-throughput data to transposable elements. Mob DNA. 2017; 8:3. Bousios A, Gaut BS, Darzentas N. PMID: 28228849.
      View in: PubMed   Mentions:
    31. CG Methylation Covaries with Differential Gene Expression between Leaf and Floral Bud Tissues of Brachypodium distachyon. PLoS One. 2016; 11(3):e0150002. Roessler K, Takuno S, Gaut BS. PMID: 26950546.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    32. Mechanistic and evolutionary questions about epigenetic conflicts between transposable elements and their plant hosts. Curr Opin Plant Biol. 2016 04; 30:123-33. Bousios A, Gaut BS. PMID: 26950253.
      View in: PubMed   Mentions: 11     Fields:    Translation:Cells
    33. Evolutionary patterns of genic DNA methylation vary across land plants. Nat Plants. 2016 01 25; 2:15222. Takuno S, Ran JH, Gaut BS. PMID: 27249194.
      View in: PubMed   Mentions: 55     Fields:    Translation:AnimalsCells
    34. A role for palindromic structures in the cis-region of maize Sirevirus LTRs in transposable element evolution and host epigenetic response. Genome Res. 2016 Feb; 26(2):226-37. Bousios A, Diez CM, Takuno S, Bystry V, Darzentas N, Gaut BS. PMID: 26631490.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    35. The jury may be out, but it is important that it deliberates: a response to Besnard and Rubio de Casas about olive domestication. . 2016 Jan; 209(2):471-3. Díez CM, Gaut BS. PMID: 26599353.
      View in: PubMed   Mentions:
    36. Genomics and the Contrasting Dynamics of Annual and Perennial Domestication. Trends Genet. 2015 Dec; 31(12):709-719. Gaut BS, Díez CM, Morrell PL. PMID: 26603610.
      View in: PubMed   Mentions: 24     Fields:    Translation:Animals
    37. First-Step Mutations during Adaptation Restore the Expression of Hundreds of Genes. Mol Biol Evol. 2016 Jan; 33(1):25-39. Rodríguez-Verdugo A, Tenaillon O, Gaut BS. PMID: 26500250.
      View in: PubMed   Mentions: 22     Fields:    Translation:Cells
    38. The phenotypic signature of adaptation to thermal stress in Escherichia coli. BMC Evol Biol. 2015 Sep 02; 15:177. Hug SM, Gaut BS. PMID: 26329930.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    39. Evolution Is an Experiment: Assessing Parallelism in Crop Domestication and Experimental Evolution: (Nei Lecture, SMBE 2014, Puerto Rico). Mol Biol Evol. 2015 Jul; 32(7):1661-71. Gaut BS. PMID: 26012904.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    40. Olive domestication and diversification in the Mediterranean Basin. New Phytol. 2015 Apr; 206(1):436-447. Diez CM, Trujillo I, Martinez-Urdiroz N, Barranco D, Rallo L, Marfil P, Gaut BS. PMID: 25420413.
      View in: PubMed   Mentions: 44     Fields:    Translation:AnimalsCells
    41. Different tradeoffs result from alternate genetic adaptations to a common environment. Proc Natl Acad Sci U S A. 2014 Aug 19; 111(33):12121-6. Rodríguez-Verdugo A, Carrillo-Cisneros D, González-González A, Gaut BS, Bennett AF. PMID: 25092325.
      View in: PubMed   Mentions: 26     Fields:    Translation:Cells
    42. The complex domestication history of the common bean. Nat Genet. 2014 Jul; 46(7):663-4. Gaut BS. PMID: 24965727.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimals
    43. Three groups of transposable elements with contrasting copy number dynamics and host responses in the maize (Zea mays ssp. mays) genome. PLoS Genet. 2014 Apr; 10(4):e1004298. Diez CM, Meca E, Tenaillon MI, Gaut BS. PMID: 24743518.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    44. The reproducibility of adaptation in the light of experimental evolution with whole genome sequencing. Adv Exp Med Biol. 2014; 781:211-31. Achaz G, Rodriguez-Verdugo A, Gaut BS, Tenaillon O. PMID: 24277302.
      View in: PubMed   Mentions: 15     Fields:    
    45. Epigenetics and plant genome evolution. Curr Opin Plant Biol. 2014 Apr; 18:1-8. Diez CM, Roessler K, Gaut BS. PMID: 24424204.
      View in: PubMed   Mentions: 28     Fields:    Translation:Cells
    46. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nat Genet. 2013 Jul; 45(7):831-5. Slotte T, Hazzouri KM, Ågren JA, Koenig D, Maumus F, Guo YL, Steige K, Platts AE, Escobar JS, Newman LK, Wang W, Mandáková T, Vello E, Smith LM, Henz SR, Steffen J, Takuno S, Brandvain Y, Coop G, Andolfatto P, Hu TT, Blanchette M, Clark RM, Quesneville H, Nordborg M, Gaut BS, Lysak MA, Jenkins J, Grimwood J, Chapman J, Prochnik S, Shu S, Rokhsar D, Schmutz J, Weigel D, Wright SI. PMID: 23749190.
      View in: PubMed   Mentions: 124     Fields:    Translation:Animals
    47. Genome size variation in wild and cultivated maize along altitudinal gradients. New Phytol. 2013 Jul; 199(1):264-276. Díez CM, Gaut BS, Meca E, Scheinvar E, Montes-Hernandez S, Eguiarte LE, Tenaillon MI. PMID: 23550586.
      View in: PubMed   Mentions: 23     Fields:    Translation:Animals
    48. Evolution of Escherichia coli rifampicin resistance in an antibiotic-free environment during thermal stress. BMC Evol Biol. 2013 Feb 22; 13:50. Rodríguez-Verdugo A, Gaut BS, Tenaillon O. PMID: 23433244.
      View in: PubMed   Mentions: 43     Fields:    Translation:Cells
    49. Gene body methylation is conserved between plant orthologs and is of evolutionary consequence. Proc Natl Acad Sci U S A. 2013 Jan 29; 110(5):1797-802. Takuno S, Gaut BS. PMID: 23319627.
      View in: PubMed   Mentions: 72     Fields:    Translation:AnimalsCells
    50. Inferences from the historical distribution of wild and domesticated maize provide ecological and evolutionary insight. PLoS One. 2012; 7(11):e47659. Hufford MB, Martínez-Meyer E, Gaut BS, Eguiarte LE, Tenaillon MI. PMID: 23155371.
      View in: PubMed   Mentions: 20     Fields:    Translation:Animals
    51. Maize HapMap2 identifies extant variation from a genome in flux. Nat Genet. 2012 Jun 03; 44(7):803-7. Chia JM, Song C, Bradbury PJ, Costich D, de Leon N, Doebley J, Elshire RJ, Gaut B, Geller L, Glaubitz JC, Gore M, Guill KE, Holland J, Hufford MB, Lai J, Li M, Liu X, Lu Y, McCombie R, Nelson R, Poland J, Prasanna BM, Pyhäjärvi T, Rong T, Sekhon RS, Sun Q, Tenaillon MI, Tian F, Wang J, Xu X, Zhang Z, Kaeppler SM, Ross-Ibarra J, McMullen MD, Buckler ES, Zhang G, Xu Y, Ware D. PMID: 22660545.
      View in: PubMed   Mentions: 232     Fields:    Translation:AnimalsCells
    52. Recent retrotransposon insertions are methylated and phylogenetically clustered in japonica rice (Oryza sativa spp. japonica). Mol Biol Evol. 2012 Oct; 29(10):3193-203. Vonholdt BM, Takuno S, Gaut BS. PMID: 22593226.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    53. Arabidopsis thaliana as a model for the genetics of local adaptation. Nat Genet. 2012 Jan 27; 44(2):115-6. Gaut B. PMID: 22281764.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    54. The molecular diversity of adaptive convergence. Science. 2012 Jan 27; 335(6067):457-61. Tenaillon O, Rodríguez-Verdugo A, Gaut RL, McDonald P, Bennett AF, Long AD, Gaut BS. PMID: 22282810.
      View in: PubMed   Mentions: 266     Fields:    Translation:Cells
    55. Retrogenes in rice (Oryza sativa L. ssp. japonica) exhibit correlated expression with their source genes. Genome Biol Evol. 2011; 3:1357-68. Sakai H, Mizuno H, Kawahara Y, Wakimoto H, Ikawa H, Kawahigashi H, Kanamori H, Matsumoto T, Itoh T, Gaut BS. PMID: 22042334.
      View in: PubMed   Mentions: 25     Fields:    Translation:AnimalsCells
    56. Mapping salinity tolerance during Arabidopsis thaliana germination and seedling growth. PLoS One. 2011; 6(8):e22832. DeRose-Wilson L, Gaut BS. PMID: 21857956.
      View in: PubMed   Mentions: 26     Fields:    Translation:AnimalsCells
    57. Body-methylated genes in Arabidopsis thaliana are functionally important and evolve slowly. Mol Biol Evol. 2012 Jan; 29(1):219-27. Takuno S, Gaut BS. PMID: 21813466.
      View in: PubMed   Mentions: 85     Fields:    Translation:AnimalsCells
    58. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet. 2011 May; 43(5):476-81. Hu TT, Pattyn P, Bakker EG, Cao J, Cheng JF, Clark RM, Fahlgren N, Fawcett JA, Grimwood J, Gundlach H, Haberer G, Hollister JD, Ossowski S, Ottilar RP, Salamov AA, Schneeberger K, Spannagl M, Wang X, Yang L, Nasrallah ME, Bergelson J, Carrington JC, Gaut BS, Schmutz J, Mayer KF, Van de Peer Y, Grigoriev IV, Nordborg M, Weigel D, Guo YL. PMID: 21478890.
      View in: PubMed   Mentions: 335     Fields:    Translation:AnimalsCells
    59. Factors that contribute to variation in evolutionary rate among Arabidopsis genes. Mol Biol Evol. 2011 Aug; 28(8):2359-69. Yang L, Gaut BS. PMID: 21389272.
      View in: PubMed   Mentions: 70     Fields:    Translation:Animals
    60. Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians. Genome Biol Evol. 2011; 3:219-29. Tenaillon MI, Hufford MB, Gaut BS, Ross-Ibarra J. PMID: 21296765.
      View in: PubMed   Mentions: 76     Fields:    Translation:AnimalsCells
    61. Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata. Proc Natl Acad Sci U S A. 2011 Feb 08; 108(6):2322-7. Hollister JD, Smith LM, Guo YL, Ott F, Weigel D, Gaut BS. PMID: 21252301.
      View in: PubMed   Mentions: 116     Fields:    Translation:AnimalsCells
    62. Lowly expressed genes in Arabidopsis thaliana bear the signature of possible pseudogenization by promoter degradation. Mol Biol Evol. 2011 Mar; 28(3):1193-203. Yang L, Takuno S, Waters ER, Gaut BS. PMID: 21059790.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    63. Genetic diversity in domesticated soybean (Glycine max) and its wild progenitor (Glycine soja) for simple sequence repeat and single-nucleotide polymorphism loci. . 2010 Oct; 188(1):242-53. Li YH, Li W, Zhang C, Yang L, Chang RZ, Gaut BS, Qiu LJ. PMID: 20618914.
      View in: PubMed   Mentions:
    64. A triptych of the evolution of plant transposable elements. Trends Plant Sci. 2010 Aug; 15(8):471-8. Tenaillon MI, Hollister JD, Gaut BS. PMID: 20541961.
      View in: PubMed   Mentions: 85     Fields:    Translation:AnimalsCells
    65. Fine scale genetic structure in the wild ancestor of maize (Zea mays ssp. parviglumis). Mol Ecol. 2010 Mar; 19(6):1162-73. Van Heerwaarden J, Ross-Ibarra J, Doebley J, Glaubitz JC, González Jde J, Gaut BS, Eguiarte LE. PMID: 20163543.
      View in: PubMed   Mentions: 9     Fields:    Translation:Animals
    66. The evolution of transposable elements in natural populations of self-fertilizing Arabidopsis thaliana and its outcrossing relative Arabidopsis lyrata. BMC Evol Biol. 2010 Jan 12; 10:10. Lockton S, Gaut BS. PMID: 20067644.
      View in: PubMed   Mentions: 32     Fields:    Translation:AnimalsCells
    67. Indel-associated mutation rate varies with mating system in flowering plants. Mol Biol Evol. 2010 Feb; 27(2):409-16. Hollister JD, Ross-Ibarra J, Gaut BS. PMID: 19825943.
      View in: PubMed   Mentions: 22     Fields:    Translation:Animals
    68. Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons? Genome Res. 2009 Dec; 19(12):2221-30. Tian Z, Rizzon C, Du J, Zhu L, Bennetzen JL, Jackson SA, Gaut BS, Ma J. PMID: 19789376.
      View in: PubMed   Mentions: 67     Fields:    Translation:AnimalsCells
    69. Selection on grain shattering genes and rates of rice domestication. New Phytol. 2009 Nov; 184(3):708-720. Zhang LB, Zhu Q, Wu ZQ, Ross-Ibarra J, Gaut BS, Ge S, Sang T. PMID: 19674325.
      View in: PubMed   Mentions: 43     Fields:    Translation:AnimalsCells
    70. Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression. Genome Res. 2009 Aug; 19(8):1419-28. Hollister JD, Gaut BS. PMID: 19478138.
      View in: PubMed   Mentions: 194     Fields:    Translation:AnimalsCells
    71. Historical divergence and gene flow in the genus Zea. Genetics. 2009 Apr; 181(4):1399-413. Ross-Ibarra J, Tenaillon M, Gaut BS. PMID: 19153259.
      View in: PubMed   Mentions: 46     Fields:    Translation:Animals
    72. The contribution of transposable elements to expressed coding sequence in Arabidopsis thaliana. J Mol Evol. 2009 Jan; 68(1):80-9. Lockton S, Gaut BS. PMID: 19125217.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    73. Multiple domestications do not appear monophyletic. Proc Natl Acad Sci U S A. 2008 Dec 09; 105(49):E105; author reply E106. Ross-Ibarra J, Gaut BS. PMID: 19057016.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    74. A comparative computational analysis of nonautonomous helitron elements between maize and rice. BMC Genomics. 2008 Oct 08; 9:467. Sweredoski M, DeRose-Wilson L, Gaut BS. PMID: 18842139.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    75. Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata. Proc Natl Acad Sci U S A. 2008 Sep 16; 105(37):13965-70. Lockton S, Ross-Ibarra J, Gaut BS. PMID: 18772373.
      View in: PubMed   Mentions: 42     Fields:    Translation:AnimalsCells
    76. Patterns of polymorphism and demographic history in natural populations of Arabidopsis lyrata. PLoS One. 2008 Jun 11; 3(6):e2411. Ross-Ibarra J, Wright SI, Foxe JP, Kawabe A, DeRose-Wilson L, Gos G, Charlesworth D, Gaut BS. PMID: 18545707.
      View in: PubMed   Mentions: 67     Fields:    Translation:Animals
    77. Selection on major components of angiosperm genomes. Science. 2008 Apr 25; 320(5875):484-6. Gaut BS, Ross-Ibarra J. PMID: 18436777.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    78. Selection on amino acid substitutions in Arabidopsis. Mol Biol Evol. 2008 Jul; 25(7):1375-83. Foxe JP, Dar VU, Zheng H, Nordborg M, Gaut BS, Wright SI. PMID: 18390851.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansAnimals
    79. A weak effect of background selection on trinucleotide microsatellites in maize. J Hered. 2008 Jan-Feb; 99(1):45-55. Thuillet AC, Tenaillon MI, Anderson LK, Mitchell SE, Kresovich S, Stack SM, Gaut B, Doebley J. PMID: 17962226.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    80. Linkage mapping of domestication loci in a large maize teosinte backcross resource. Genetics. 2007 Nov; 177(3):1915-28. Briggs WH, McMullen MD, Gaut BS, Doebley J. PMID: 17947434.
      View in: PubMed   Mentions: 41     Fields:    Translation:AnimalsCells
    81. Population and evolutionary dynamics of Helitron transposable elements in Arabidopsis thaliana. Mol Biol Evol. 2007 Nov; 24(11):2515-24. Hollister JD, Gaut BS. PMID: 17890239.
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    82. Patterns of selection and tissue-specific expression among maize domestication and crop improvement loci. Plant Physiol. 2007 Jul; 144(3):1642-53. Hufford KM, Canaran P, Ware DH, McMullen MD, Gaut BS. PMID: 17496114.
      View in: PubMed   Mentions: 9     Fields:    Translation:Animals
    83. Plant domestication, a unique opportunity to identify the genetic basis of adaptation. Proc Natl Acad Sci U S A. 2007 May 15; 104 Suppl 1:8641-8. Ross-Ibarra J, Morrell PL, Gaut BS. PMID: 17494757.
      View in: PubMed   Mentions: 110     Fields:    Translation:Animals
    84. Transcription-related mutations and GC content drive variation in nucleotide substitution rates across the genomes of Arabidopsis thaliana and Arabidopsis lyrata. BMC Evol Biol. 2007 Apr 23; 7:66. DeRose-Wilson LJ, Gaut BS. PMID: 17451608.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    85. Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice. Mol Biol Evol. 2007 Mar; 24(3):875-88. Zhu Q, Zheng X, Luo J, Gaut BS, Ge S. PMID: 17218640.
      View in: PubMed   Mentions: 115     Fields:    Translation:AnimalsCells
    86. Spatial scale of local adaptation and population genetic structure in a miniature succulent, Argyroderma pearsonii. New Phytol. 2007; 174(4):904-914. Ellis AG, Weis AE, Gaut BS. PMID: 17504471.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    87. Recombination: an underappreciated factor in the evolution of plant genomes. Nat Rev Genet. 2007 Jan; 8(1):77-84. Gaut BS, Wright SI, Rizzon C, Dvorak J, Anderson LK. PMID: 17173059.
      View in: PubMed   Mentions: 106     Fields:    Translation:Animals
    88. The molecular genetics of crop domestication. Cell. 2006 Dec 29; 127(7):1309-21. Doebley JF, Gaut BS, Smith BD. PMID: 17190597.
      View in: PubMed   Mentions: 479     Fields:    Translation:HumansAnimals
    89. Phylogenetic analysis, genome evolution and the rate of gene gain in the Herpesviridae. Mol Phylogenet Evol. 2007 Jun; 43(3):1066-75. Wang N, Baldi PF, Gaut BS. PMID: 17196839.
      View in: PubMed   Mentions: 11     Fields:    Translation:Cells
    90. Testing for effects of recombination rate on nucleotide diversity in natural populations of Arabidopsis lyrata. Genetics. 2006 Nov; 174(3):1421-30. Wright SI, Foxe JP, DeRose-Wilson L, Kawabe A, Looseley M, Gaut BS, Charlesworth D. PMID: 16951057.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    91. Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice. PLoS Comput Biol. 2006 Sep 01; 2(9):e115. Rizzon C, Ponger L, Gaut BS. PMID: 16948529.
      View in: PubMed   Mentions: 115     Fields:    Translation:AnimalsCells
    92. Adaptive selection of mitochondrial complex I subunits during primate radiation. Gene. 2006 Aug 15; 378:11-8. Mishmar D, Ruiz-Pesini E, Mondragon-Palomino M, Procaccio V, Gaut B, Wallace DC. PMID: 16828987.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansAnimalsCells
    93. Timing and rate of speciation in Agave (Agavaceae). Proc Natl Acad Sci U S A. 2006 Jun 13; 103(24):9124-9. Good-Avila SV, Souza V, Gaut BS, Eguiarte LE. PMID: 16757559.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    94. Molecular and functional diversity of maize. Curr Opin Plant Biol. 2006 Apr; 9(2):172-6. Buckler ES, Gaut BS, McMullen MD. PMID: 16459128.
      View in: PubMed   Mentions: 71     Fields:    Translation:Animals
    95. Panzea: a database and resource for molecular and functional diversity in the maize genome. Nucleic Acids Res. 2006 Jan 01; 34(Database issue):D752-7. Zhao W, Canaran P, Jurkuta R, Fulton T, Glaubitz J, Buckler E, Doebley J, Gaut B, Goodman M, Holland J, Kresovich S, McMullen M, Stein L, Ware D. PMID: 16381974.
      View in: PubMed   Mentions: 31     Fields:    Translation:Animals
    96. Evolutionary radiation of "stone plants" in the genus Argyroderma (Aizoaceae): unraveling the effects of landscape, habitat, and flowering time. Evolution. 2006 Jan; 60(1):39-55. Ellis AG, Weis AE, Gaut BS. PMID: 16568630.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    97. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet. 2006 Feb; 38(2):203-8. Yu J, Pressoir G, Briggs WH, Vroh Bi I, Yamasaki M, Doebley JF, McMullen MD, Gaut BS, Nielsen DM, Holland JB, Kresovich S, Buckler ES. PMID: 16380716.
      View in: PubMed   Mentions: 1227     Fields:    Translation:HumansAnimals
    98. Uneven distribution of expressed sequence tag loci on maize pachytene chromosomes. Genome Res. 2006 Jan; 16(1):115-22. Anderson LK, Lai A, Stack SM, Rizzon C, Gaut BS. PMID: 16339046.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    99. A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement. Plant Cell. 2005 Nov; 17(11):2859-72. Yamasaki M, Tenaillon MI, Bi IV, Schroeder SG, Sanchez-Villeda H, Doebley JF, Gaut BS, McMullen MD. PMID: 16227451.
      View in: PubMed   Mentions: 90     Fields:    Translation:Animals
    100. Variation in mutation dynamics across the maize genome as a function of regional and flanking base composition. Genetics. 2006 Jan; 172(1):569-77. Morton BR, Bi IV, McMullen MD, Gaut BS. PMID: 16219784.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    101. Gene conversion and the evolution of three leucine-rich repeat gene families in Arabidopsis thaliana. Mol Biol Evol. 2005 Dec; 22(12):2444-56. Mondragon-Palomino M, Gaut BS. PMID: 16120808.
      View in: PubMed   Mentions: 82     Fields:    Translation:Animals
    102. The effects of artificial selection on the maize genome. Science. 2005 May 27; 308(5726):1310-4. Wright SI, Bi IV, Schroeder SG, Yamasaki M, Doebley JF, McMullen MD, Gaut BS. PMID: 15919994.
      View in: PubMed   Mentions: 274     Fields:    Translation:Animals
    103. Plant conserved non-coding sequences and paralogue evolution. Trends Genet. 2005 Jan; 21(1):60-5. Lockton S, Gaut BS. PMID: 15680516.
      View in: PubMed   Mentions: 61     Fields:    Translation:AnimalsCells
    104. Molecular population genetics and the search for adaptive evolution in plants. Mol Biol Evol. 2005 Mar; 22(3):506-19. Wright SI, Gaut BS. PMID: 15525701.
      View in: PubMed   Mentions: 95     Fields:    Translation:Animals
    105. Population genetic evidence for rapid changes in intraspecific diversity and allelic cycling of a specialist defense gene in Zea. Genetics. 2004 Sep; 168(1):425-34. Tiffin P, Hacker R, Gaut BS. PMID: 15454554.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    106. Selection versus demography: a multilocus investigation of the domestication process in maize. Mol Biol Evol. 2004 Jul; 21(7):1214-25. Tenaillon MI, U'Ren J, Tenaillon O, Gaut BS. PMID: 15014173.
      View in: PubMed   Mentions: 108     Fields:    Translation:AnimalsCells
    107. Extensive gene gain associated with adaptive evolution of poxviruses. Proc Natl Acad Sci U S A. 2003 Dec 23; 100(26):15655-60. McLysaght A, Baldi PF, Gaut BS. PMID: 14660798.
      View in: PubMed   Mentions: 69     Fields:    Translation:HumansAnimalsCells
    108. Does recombination shape the distribution and evolution of tandemly arrayed genes (TAGs) in the Arabidopsis thaliana genome? Genome Res. 2003 Dec; 13(12):2533-40. Zhang L, Gaut BS. PMID: 14656961.
      View in: PubMed   Mentions: 49     Fields:    Translation:AnimalsCells
    109. The lowdown on linkage disequilibrium. Plant Cell. 2003 Jul; 15(7):1502-6. Gaut BS, Long AD. PMID: 12837942.
      View in: PubMed   Mentions: 80     Fields:    Translation:Animals
    110. LineUp: statistical detection of chromosomal homology with application to plant comparative genomics. Genome Res. 2003 May; 13(5):999-1010. Hampson S, McLysaght A, Gaut B, Baldi P. PMID: 12695327.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    111. Patterns of diversity and recombination along chromosome 1 of maize (Zea mays ssp. mays L.). Genetics. 2002 Nov; 162(3):1401-13. Tenaillon MI, Sawkins MC, Anderson LK, Stack SM, Doebley J, Gaut BS. PMID: 12454083.
      View in: PubMed   Mentions: 42     Fields:    Translation:AnimalsCells
    112. Population genetics of duplicated disease-defense genes, hm1 and hm2, in maize (Zea mays ssp. mays L.) and its wild ancestor (Zea mays ssp. parviglumis). Genetics. 2002 Oct; 162(2):851-60. Zhang L, Peek AS, Dunams D, Gaut BS. PMID: 12399395.
      View in: PubMed   Mentions: 18     Fields:    Translation:Animals
    113. Genetic diversity and selection in the maize starch pathway. Proc Natl Acad Sci U S A. 2002 Oct 01; 99(20):12959-62. Whitt SR, Wilson LM, Tenaillon MI, Gaut BS, Buckler ES. PMID: 12244216.
      View in: PubMed   Mentions: 107     Fields:    Translation:Animals
    114. Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana. Mol Biol Evol. 2002 Sep; 19(9):1464-73. Zhang L, Vision TJ, Gaut BS. PMID: 12200474.
      View in: PubMed   Mentions: 52     Fields:    Translation:AnimalsCells
    115. Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana. Genome Res. 2002 Sep; 12(9):1305-15. Mondragón-Palomino M, Meyers BC, Michelmore RW, Gaut BS. PMID: 12213767.
      View in: PubMed   Mentions: 106     Fields:    Translation:AnimalsCells
    116. Patterns of chromosomal duplication in maize and their implications for comparative maps of the grasses. Genome Res. 2001 Jan; 11(1):55-66. Gaut BS. PMID: 11156615.
      View in: PubMed   Mentions: 61     Fields:    Translation:Animals
    117. Maize as a model for the evolution of plant nuclear genomes. Proc Natl Acad Sci U S A. 2000 Jun 20; 97(13):7008-15. Gaut BS, Le Thierry d'Ennequin M, Peek AS, Sawkins MC. PMID: 10860964.
      View in: PubMed   Mentions: 67     Fields:    Translation:Animals
    118. Patterns of genetic diversification within the Adh gene family in the grasses (Poaceae). Mol Biol Evol. 1999 Aug; 16(8):1086-97. Gaut BS, Peek AS, Morton BR, Clegg MT. PMID: 10474904.
      View in: PubMed   Mentions: 23     Fields:    Translation:Animals
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