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Sandmeyer, Suzanne B

Title(s)Professor, Biological Chemistry
Phone(949) 824-2042
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    Collapse Research 
    Collapse Research Activities and Funding
    High-Throughput DNA Sequencer
    NIH S10OD021718Mar 15, 2016 - Mar 14, 2017
    Role: Principal Investigator
    PacBio RS Single Molecule, Real-Time (SMRT) DNA Sequencer
    NIH S10OD010794May 1, 2012 - Apr 30, 2013
    Role: Principal Investigator
    High Throughput DNA Sequencer
    NIH/NCRR S10RR025496May 1, 2009 - Apr 30, 2010
    Role: Principal Investigator
    Identification of Host Genes for Retroviral Replication
    NIH/NIGMS R21GM073052Sep 1, 2005 - Aug 31, 2008
    Role: Principal Investigator
    Ty3 Viruslike Particle Morphogenesis and Host Interactions
    NIH/NIGMS R01GM033281Apr 1, 1984 - Mar 31, 2014
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Patterson K, Shavarebi F, Magnan C, Chang I, Qi X, Baldi P, Bilanchone V, Sandmeyer SB. Local features determine Ty3 targeting frequency at RNA polymerase III transcription start sites. Genome Res. 2019 08; 29(8):1298-1309. PMID: 31249062.
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    2. Dodonova SO, Prinz S, Bilanchone V, Sandmeyer S, Briggs JAG. Structure of the Ty3/Gypsy retrotransposon capsid and the evolution of retroviruses. Proc Natl Acad Sci U S A. 2019 May 14; 116(20):10048-10057. PMID: 31036670.
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    3. Yu J, Landberg J, Shavarebi F, Bilanchone V, Okerlund A, Wanninayake U, Zhao L, Kraus G, Sandmeyer S. Bioengineering triacetic acid lactone production in Yarrowia lipolytica for pogostone synthesis. Biotechnol Bioeng. 2018 09; 115(9):2383-2388. PMID: 29777591.
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    4. Patterson K, Yu J, Landberg J, Chang I, Shavarebi F, Bilanchone V, Sandmeyer S. Functional genomics for the oleaginous yeast Yarrowia lipolytica. Metab Eng. 2018 07; 48:184-196. PMID: 29792930.
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    5. Rowley PA, Patterson K, Sandmeyer SB, Sawyer SL. Control of yeast retrotransposons mediated through nucleoporin evolution. PLoS Genet. 2018 04; 14(4):e1007325. PMID: 29694349.
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    6. Magnan C, Yu J, Chang I, Jahn E, Kanomata Y, Wu J, Zeller M, Oakes M, Baldi P, Sandmeyer S. Sequence Assembly of Yarrowia lipolytica Strain W29/CLIB89 Shows Transposable Element Diversity. PLoS One. 2016; 11(9):e0162363. PMID: 27603307.
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    7. Bilanchone V, Clemens K, Kaake R, Dawson AR, Matheos D, Nagashima K, Sitlani P, Patterson K, Chang I, Huang L, Sandmeyer S. Ty3 Retrotransposon Hijacks Mating Yeast RNA Processing Bodies to Infect New Genomes. PLoS Genet. 2015; 11(9):e1005528. PMID: 26421679.
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    8. Sandmeyer S, Patterson K, Bilanchone V. Ty3, a Position-specific Retrotransposon in Budding Yeast. Microbiol Spectr. 2015 Apr; 3(2):MDNA3-0057-2014. PMID: 26104707.
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    9. Qi X, Vargas E, Larsen L, Knapp W, Hatfield GW, Lathrop R, Sandmeyer S. Directed DNA shuffling of retrovirus and retrotransposon integrase protein domains. PLoS One. 2013; 8(5):e63957. PMID: 23691126.
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    10. Liu P, Chernyshov A, Najdi T, Fu Y, Dickerson J, Sandmeyer S, Jarboe L. Membrane stress caused by octanoic acid in Saccharomyces cerevisiae. Appl Microbiol Biotechnol. 2013 Apr; 97(7):3239-51. PMID: 23435986.
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    11. Shen MW, Fang F, Sandmeyer S, Da Silva NA. Development and characterization of a vector set with regulated promoters for systematic metabolic engineering in Saccharomyces cerevisiae. Yeast. 2012 Dec; 29(12):495-503. PMID: 23166051.
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    12. Clemens K, Bilanchone V, Beliakova-Bethell N, Larsen LS, Nguyen K, Sandmeyer S. Sequence requirements for localization and packaging of Ty3 retroelement RNA. Virus Res. 2013 Feb; 171(2):319-31. PMID: 23073180.
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    13. Qi X, Sandmeyer S. In vitro targeting of strand transfer by the Ty3 retroelement integrase. J Biol Chem. 2012 May 25; 287(22):18589-95. PMID: 22493285.
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    14. Qi X, Daily K, Nguyen K, Wang H, Mayhew D, Rigor P, Forouzan S, Johnston M, Mitra RD, Baldi P, Sandmeyer S. Retrotransposon profiling of RNA polymerase III initiation sites. Genome Res. 2012 Apr; 22(4):681-92. PMID: 22287102.
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    15. Clemens K, Larsen L, Zhang M, Kuznetsov Y, Bilanchone V, Randall A, Harned A, Dasilva R, Nagashima K, McPherson A, Baldi P, Sandmeyer S. The TY3 Gag3 spacer controls intracellular condensation and uncoating. J Virol. 2011 Apr; 85(7):3055-66. PMID: 21270167.
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    16. Sandmeyer SB, Clemens KA. Function of a retrotransposon nucleocapsid protein. RNA Biol. 2010 Nov-Dec; 7(6):642-54. PMID: 21189452.
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    17. Fang F, Salmon K, Shen MW, Aeling KA, Ito E, Irwin B, Tran UP, Hatfield GW, Da Silva NA, Sandmeyer S. A vector set for systematic metabolic engineering in Saccharomyces cerevisiae. Yeast. 2011 Feb; 28(2):123-36. PMID: 20936606.
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    18. Zhang M, Larsen LS, Irwin B, Bilanchone V, Sandmeyer S. Two-hybrid analysis of Ty3 capsid subdomain interactions. Mob DNA. 2010 May 05; 1(1):14. PMID: 20444245.
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    19. Beliakova-Bethell N, Terry LJ, Bilanchone V, DaSilva R, Nagashima K, Wente SR, Sandmeyer S. Ty3 nuclear entry is initiated by viruslike particle docking on GLFG nucleoporins. J Virol. 2009 Nov; 83(22):11914-25. PMID: 19759143.
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    20. Larsen LS, Beliakova-Bethell N, Bilanchone V, Zhang M, Lamsa A, Dasilva R, Hatfield GW, Nagashima K, Sandmeyer S. Ty3 nucleocapsid controls localization of particle assembly. J Virol. 2008 Mar; 82(5):2501-14. PMID: 18094177.
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    21. Larsen LS, Kuznetsov Y, McPherson A, Hatfield GW, Sandmeyer S. TY3 GAG3 protein forms ordered particles in Escherichia coli. Virology. 2008 Jan 20; 370(2):223-7. PMID: 17964628.
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    22. Larsen LS, Zhang M, Beliakova-Bethell N, Bilanchone V, Lamsa A, Nagashima K, Najdi R, Kosaka K, Kovacevic V, Cheng J, Baldi P, Hatfield GW, Sandmeyer S. Ty3 capsid mutations reveal early and late functions of the amino-terminal domain. J Virol. 2007 Jul; 81(13):6957-72. PMID: 17442718.
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    23. Beliakova-Bethell N, Beckham C, Giddings TH, Winey M, Parker R, Sandmeyer S. Virus-like particles of the Ty3 retrotransposon assemble in association with P-body components. RNA. 2006 Jan; 12(1):94-101. PMID: 16373495.
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    24. Kuznetsov YG, Zhang M, Menees TM, McPherson A, Sandmeyer S. Investigation by atomic force microscopy of the structure of Ty3 retrotransposon particles. J Virol. 2005 Jul; 79(13):8032-45. PMID: 15956549.
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    25. Irwin B, Aye M, Baldi P, Beliakova-Bethell N, Cheng H, Dou Y, Liou W, Sandmeyer S. Retroviruses and yeast retrotransposons use overlapping sets of host genes. Genome Res. 2005 May; 15(5):641-54. PMID: 15837808.
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    26. Aye M, Irwin B, Beliakova-Bethell N, Chen E, Garrus J, Sandmeyer S. Host factors that affect Ty3 retrotransposition in Saccharomyces cerevisiae. Genetics. 2004 Nov; 168(3):1159-76. PMID: 15579677.
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    27. Aye M, Sandmeyer SB. Ty3 requires yeast La homologous protein for wild-type frequencies of transposition. Mol Microbiol. 2003 Jul; 49(2):501-15. PMID: 12828645.
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    28. Sandmeyer S. Integration by design. Proc Natl Acad Sci U S A. 2003 May 13; 100(10):5586-8. PMID: 12732725.
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    29. Nagy A, Perrimon N, Sandmeyer S, Plasterk R. Tailoring the genome: the power of genetic approaches. Nat Genet. 2003 Mar; 33 Suppl:276-84. PMID: 12610537.
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    30. Yieh L, Hatzis H, Kassavetis G, Sandmeyer SB. Mutational analysis of the transcription factor IIIB-DNA target of Ty3 retroelement integration. J Biol Chem. 2002 Jul 19; 277(29):25920-8. PMID: 11994300.
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    31. Nymark-McMahon MH, Beliakova-Bethell NS, Darlix JL, Le Grice SF, Sandmeyer SB. Ty3 integrase is required for initiation of reverse transcription. J Virol. 2002 Mar; 76(6):2804-16. PMID: 11861848.
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    32. Aye M, Dildine SL, Claypool JA, Jourdain S, Sandmeyer SB. A truncation mutant of the 95-kilodalton subunit of transcription factor IIIC reveals asymmetry in Ty3 integration. Mol Cell Biol. 2001 Nov; 21(22):7839-51. PMID: 11604518.
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    33. Lin SS, Nymark-McMahon MH, Yieh L, Sandmeyer SB. Integrase mediates nuclear localization of Ty3. Mol Cell Biol. 2001 Nov; 21(22):7826-38. PMID: 11604517.
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    34. Claypool JA, Malik HS, Eickbush TH, Sandmeyer SB. Ten-kilodalton domain in Ty3 Gag3-Pol3p between PR and RT is dispensable for Ty3 transposition. J Virol. 2001 Feb; 75(3):1557-60. PMID: 11152529.
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    35. Yieh L, Kassavetis G, Geiduschek EP, Sandmeyer SB. The Brf and TATA-binding protein subunits of the RNA polymerase III transcription factor IIIB mediate position-specific integration of the gypsy-like element, Ty3. J Biol Chem. 2000 Sep 22; 275(38):29800-7. PMID: 10882723.
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    36. Hu YJ, Sandmeyer S, McLaughlin C, Kibler D. Combinatorial motif analysis and hypothesis generation on a genomic scale. Bioinformatics. 2000 Mar; 16(3):222-32. PMID: 10869015.
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    37. Hampson S, Baldi P, Kibler D, Sandmeyer SB. Analysis of yeast's ORF upstream regions by parallel processing, microarrays, and computational methods. Proc Int Conf Intell Syst Mol Biol. 2000; 8:190-201. PMID: 10977080.
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    38. Seol JH, Feldman RM, Zachariae W, Shevchenko A, Correll CC, Lyapina S, Chi Y, Galova M, Claypool J, Sandmeyer S, Nasmyth K, Deshaies RJ, Shevchenko A, Deshaies RJ. Cdc53/cullin and the essential Hrt1 RING-H2 subunit of SCF define a ubiquitin ligase module that activates the E2 enzyme Cdc34. Genes Dev. 1999 Jun 15; 13(12):1614-26. PMID: 10385629.
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    39. Nymark-McMahon MH, Sandmeyer SB. Mutations in nonconserved domains of Ty3 integrase affect multiple stages of the Ty3 life cycle. J Virol. 1999 Jan; 73(1):453-65. PMID: 9847351.
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    40. Gabus C, Ficheux D, Rau M, Keith G, Sandmeyer S, Darlix JL. The yeast Ty3 retrotransposon contains a 5'-3' bipartite primer-binding site and encodes nucleocapsid protein NCp9 functionally homologous to HIV-1 NCp7. EMBO J. 1998 Aug 17; 17(16):4873-80. PMID: 9707446.
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    41. Sandmeyer S. Targeting transposition: at home in the genome. Genome Res. 1998 May; 8(5):416-8. PMID: 9582185.
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    42. Dildine SL, Respess J, Jolly D, Sandmeyer SB. A chimeric Ty3/Moloney murine leukemia virus integrase protein is active in vivo. J Virol. 1998 May; 72(5):4297-307. PMID: 9557720.
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    43. Dildine SL, Sandmeyer SB. Integration of the yeast retrovirus-like element Ty3 upstream of a human tRNA gene expressed in yeast. Gene. 1997 Jul 31; 194(2):227-33. PMID: 9272864.
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    44. Gu J, Emerman M, Sandmeyer S. Small heat shock protein suppression of Vpr-induced cytoskeletal defects in budding yeast. Mol Cell Biol. 1997 Jul; 17(7):4033-42. PMID: 9199338.
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    45. Connolly CM, Sandmeyer SB. RNA polymerase III interferes with Ty3 integration. FEBS Lett. 1997 Apr 01; 405(3):305-11. PMID: 9108309.
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    46. Kirchner J, Sandmeyer SB. Ty3 integrase mutants defective in reverse transcription or 3'-end processing of extrachromosomal Ty3 DNA. J Virol. 1996 Jul; 70(7):4737-47. PMID: 8676501.
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    47. Orlinsky KJ, Gu J, Hoyt M, Sandmeyer S, Menees TM. Mutations in the Ty3 major homology region affect multiple steps in Ty3 retrotransposition. J Virol. 1996 Jun; 70(6):3440-8. PMID: 8648676.
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    48. Menees TM, Sandmeyer SB. Cellular stress inhibits transposition of the yeast retrovirus-like element Ty3 by a ubiquitin-dependent block of virus-like particle formation. Proc Natl Acad Sci U S A. 1996 May 28; 93(11):5629-34. PMID: 8643628.
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    49. Sandmeyer SB, Menees TM. Morphogenesis at the retrotransposon-retrovirus interface: gypsy and copia families in yeast and Drosophila. Curr Top Microbiol Immunol. 1996; 214:261-96. PMID: 8791731.
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    50. Kirchner J, Connolly CM, Sandmeyer SB. Requirement of RNA polymerase III transcription factors for in vitro position-specific integration of a retroviruslike element. Science. 1995 Mar 10; 267(5203):1488-91. PMID: 7878467.
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    51. Kinsey PT, Sandmeyer SB. Ty3 transposes in mating populations of yeast: a novel transposition assay for Ty3. Genetics. 1995 Jan; 139(1):81-94. PMID: 7705653.
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    52. Menees TM, Sandmeyer SB. Transposition of the yeast retroviruslike element Ty3 is dependent on the cell cycle. Mol Cell Biol. 1994 Dec; 14(12):8229-40. PMID: 7969160.
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    53. Orlinsky KJ, Sandmeyer SB. The Cys-His motif of Ty3 NC can be contributed by Gag3 or Gag3-Pol3 polyproteins. J Virol. 1994 Jul; 68(7):4152-66. PMID: 7515969.
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    54. Bilanchone VW, Claypool JA, Kinsey PT, Sandmeyer SB. Positive and negative regulatory elements control expression of the yeast retrotransposon Ty3. Genetics. 1993 Jul; 134(3):685-700. PMID: 8394262.
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    55. Chalker DL, Sandmeyer SB. Sites of RNA polymerase III transcription initiation and Ty3 integration at the U6 gene are positioned by the TATA box. Proc Natl Acad Sci U S A. 1993 Jun 01; 90(11):4927-31. PMID: 8389458.
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    56. Kirchner J, Sandmeyer S. Proteolytic processing of Ty3 proteins is required for transposition. J Virol. 1993 Jan; 67(1):19-28. PMID: 7677953.
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    57. Kirchner J, Sandmeyer SB, Forrest DB. Transposition of a Ty3 GAG3-POL3 fusion mutant is limited by availability of capsid protein. J Virol. 1992 Oct; 66(10):6081-92. PMID: 1326658.
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    58. Sandmeyer SB. Yeast retrotransposons. Curr Opin Genet Dev. 1992 Oct; 2(5):705-11. PMID: 1333855.
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    59. Hansen LJ, Chalker DL, Orlinsky KJ, Sandmeyer SB. Ty3 GAG3 and POL3 genes encode the components of intracellular particles. J Virol. 1992 Mar; 66(3):1414-24. PMID: 1371165.
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    60. Chalker DL, Sandmeyer SB. Ty3 integrates within the region of RNA polymerase III transcription initiation. Genes Dev. 1992 Jan; 6(1):117-28. PMID: 1309715.
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    61. Kinsey PT, Sandmeyer SB. Adjacent pol II and pol III promoters: transcription of the yeast retrotransposon Ty3 and a target tRNA gene. Nucleic Acids Res. 1991 Mar 25; 19(6):1317-24. PMID: 1851556.
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    62. Chalker DL, Sandmeyer SB. Transfer RNA genes are genomic targets for de Novo transposition of the yeast retrotransposon Ty3. Genetics. 1990 Dec; 126(4):837-50. PMID: 1963869.
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    63. Hansen LJ, Sandmeyer SB. Characterization of a transpositionally active Ty3 element and identification of the Ty3 integrase protein. J Virol. 1990 Jun; 64(6):2599-607. PMID: 2159534.
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    64. Sandmeyer SB, Hansen LJ, Chalker DL. Integration specificity of retrotransposons and retroviruses. Annu Rev Genet. 1990; 24:491-518. PMID: 1965102.
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    65. Hansen LJ, Chalker DL, Sandmeyer SB. Ty3, a yeast retrotransposon associated with tRNA genes, has homology to animal retroviruses. Mol Cell Biol. 1988 Dec; 8(12):5245-56. PMID: 2854194.
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    66. Sandmeyer SB, Bilanchone VW, Clark DJ, Morcos P, Carle GF, Brodeur GM. Sigma elements are position-specific for many different yeast tRNA genes. Nucleic Acids Res. 1988 Feb 25; 16(4):1499-515. PMID: 3279393.
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    67. Clark DJ, Bilanchone VW, Haywood LJ, Dildine SL, Sandmeyer SB. A yeast sigma composite element, TY3, has properties of a retrotransposon. J Biol Chem. 1988 Jan 25; 263(3):1413-23. PMID: 2447089.
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    68. Brodeur GM, Sandmeyer SB, Olson MV. Consistent association between sigma elements and tRNA genes in yeast. Proc Natl Acad Sci U S A. 1983 Jun; 80(11):3292-6. PMID: 6344079.
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    69. Sandmeyer SB, Olson MV. Insertion of a repetitive element at the same position in the 5'-flanking regions of two dissimilar yeast tRNA genes. Proc Natl Acad Sci U S A. 1982 Dec; 79(24):7674-8. PMID: 6760201.
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    70. Sandmeyer S, Gallis B, Bornstein P. Coordinate transcriptional regulation of type I procollagen genes by Rous sarcoma virus. J Biol Chem. 1981 May 25; 256(10):5022-8. PMID: 6164678.
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