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James Jordan Emerson

Title(s)Assistant Professor, Ecology & Evolutionary Biology
SchoolSchool of Biological Sciences
Phone(949) 824-9527
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    Structural variation population size and the evolution of genome complexity
    NIH R01GM123303Aug 1, 2017 - Jul 31, 2022
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Genetic variation in recalcitrant repetitive regions of the Drosophila melanogaster genome. Genome Res. 2025 Sep 02; 35(9):2023-2040. Shukla HG, Chakraborty M, Emerson JJ. PMID: 40670076; PMCID: PMC12400953.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    2. The 3D architecture of the pepper genome and its relationship to function and evolution. Nat Commun. 2022 06 16; 13(1):3479. Liao Y, Wang J, Zhu Z, Liu Y, Chen J, Zhou Y, Liu F, Lei J, Gaut BS, Cao B, Emerson JJ, Chen C. PMID: 35710823; PMCID: PMC9203530.
      View in: PubMed   Mentions: 40     Fields:    Translation:AnimalsCells
    3. Author Correction: Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly. BMC Biol. 2022 May 02; 20(1):96. Chakraborty M, Ramaiah A, Adolfi A, Halas P, Kaduskar B, Ngo LT, Jayaprasad S, Paul K, Whadgar S, Srinivasan S, Subramani S, Bier E, James AA, Emerson JJ. PMID: 35501892; PMCID: PMC9059397.
      View in: PubMed   Mentions: 3     Fields:    
    4. Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly. BMC Biol. 2021 02 10; 19(1):28. Chakraborty M, Ramaiah A, Adolfi A, Halas P, Kaduskar B, Ngo LT, Jayaprasad S, Paul K, Whadgar S, Srinivasan S, Subramani S, Bier E, James AA, Emerson JJ. PMID: 33568145; PMCID: PMC7876825.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsPHPublic Health
    5. Inferring Compensatory Evolution of cis- and trans-Regulatory Variation. Trends Genet. 2019 01; 35(1):1-3. Zhang X, Emerson JJ. PMID: 30503570; PMCID: PMC8244802.
      View in: PubMed   Mentions: 9     Fields:    
    6. Rapid Low-Cost Assembly of the Drosophila melanogaster Reference Genome Using Low-Coverage, Long-Read Sequencing. G3 (Bethesda). 2018 10 03; 8(10):3143-3154. Solares EA, Chakraborty M, Miller DE, Kalsow S, Hall K, Perera AG, Emerson JJ, Hawley RS. PMID: 30018084; PMCID: PMC6169397.
      View in: PubMed   Mentions: 57     Fields:    Translation:Animals
    7. Hidden genetic variation shapes the structure of functional elements in Drosophila. Nat Genet. 2018 01; 50(1):20-25. Chakraborty M, VanKuren NW, Zhao R, Zhang X, Kalsow S, Emerson JJ. PMID: 29255259; PMCID: PMC5742068.
      View in: PubMed   Mentions: 86     Fields:    Translation:Animals
    8. Evolution: A Paradigm Shift in Snake Sex Chromosome Genetics. Curr Biol. 2017 08 21; 27(16):R800-R803. Emerson JJ. PMID: 28829965.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    9. Meiotic Sex Chromosome Inactivation: Compensation by Gene Traffic. Curr Biol. 2017 07 10; 27(13):R659-R661. Long M, Emerson JJ. PMID: 28697367.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    10. Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage. Nucleic Acids Res. 2016 Nov 02; 44(19):e147. Chakraborty M, Baldwin-Brown JG, Long AD, Emerson JJ. PMID: 27458204; PMCID: PMC5100563.
      View in: PubMed   Mentions: 276     Fields:    Translation:HumansAnimalsCells
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