Nicholas Edward Baker

Title(s)Professor, Microbiology and Molecular Genetics
SchoolSchool of Medicine
Address1001 Health Sciences Road
Irvine CA 92697-3950
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    1. Founding the Wnt gene family: How wingless was found to be a positional signal and oncogene homolog. Bioessays. 2024 02; 46(2):e2300156. Baker NE. PMID: 38214693.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    2. Protocol for assessing translation in living Drosophila imaginal discs by O-propargyl-puromycin incorporation. STAR Protoc. 2023 Dec 15; 4(4):102653. Kiparaki M, Baker NE. PMID: 37862174; PMCID: PMC10616417.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    3. Ribosomal protein mutations and cell competition: autonomous and nonautonomous effects on a stress response. Genetics. 2023 Jul 06; 224(3). Kiparaki M, Baker NE. PMID: 37267156; PMCID: PMC10691752.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimals
    4. Haploinsufficiency of the essential gene Rps12 causes defects in erythropoiesis and hematopoietic stem cell maintenance. Elife. 2023 Jun 05; 12. Folgado-Marco V, Ames K, Chuen J, Gritsman K, Baker NE. PMID: 37272618; PMCID: PMC10287158.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    5. The CRL4 E3 ligase Mahjong/DCAF1 controls cell competition through the transcription factor Xrp1, independently of polarity genes. Development. 2022 11 15; 149(22). Kumar A, Baker NE. PMID: 36278853; PMCID: PMC9845748.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    6. Reducing the aneuploid cell burden - cell competition and the ribosome connection. Dis Model Mech. 2022 11 01; 15(11). Baker NE, Montagna C. PMID: 36444717; PMCID: PMC10621665.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    7. The transcription factor Xrp1 orchestrates both reduced translation and cell competition upon defective ribosome assembly or function. Elife. 2022 02 18; 11. Kiparaki M, Khan C, Folgado-Marco V, Chuen J, Moulos P, Baker NE. PMID: 35179490; PMCID: PMC8933008.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    8. New regulators of Drosophila eye development identified from temporal transcriptome changes. Genetics. 2021 04 15; 217(4). Quiquand M, Rimesso G, Qiao N, Suo S, Zhao C, Slattery M, White KP, Han JJ, Baker NE. PMID: 33681970; PMCID: PMC8049564.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    9. Cell competition removes segmental aneuploid cells from Drosophila imaginal disc-derived tissues based on ribosomal protein gene dose. Elife. 2021 04 13; 10. Ji Z, Chuen J, Kiparaki M, Baker N. PMID: 33847264; PMCID: PMC8043752.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimals
    10. Author Correction: Emerging mechanisms of cell competition. Nat Rev Genet. 2020 Nov; 21(11):716. Baker NE. PMID: 32860015.
      View in: PubMed   Mentions:    Fields:    
    11. Emerging mechanisms of cell competition. Nat Rev Genet. 2020 11; 21(11):683-697. Baker NE. PMID: 32778819; PMCID: PMC8205513.
      View in: PubMed   Mentions: 75     Fields:    Translation:HumansAnimals
    12. Roles of C/EBP class bZip proteins in the growth and cell competition of Rp ('Minute') mutants in Drosophila. Elife. 2020 01 07; 9. Blanco J, Cooper JC, Baker NE. PMID: 31909714; PMCID: PMC6946401.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    13. Drosophila RpS12 controls translation, growth, and cell competition through Xrp1. PLoS Genet. 2019 12; 15(12):e1008513. Ji Z, Kiparaki M, Folgado V, Kumar A, Blanco J, Rimesso G, Chuen J, Liu Y, Zheng D, Baker NE. PMID: 31841522; PMCID: PMC6936874.
      View in: PubMed   Mentions: 22     Fields:    Translation:AnimalsCells
    14. Correction: Salvador-Warts-Hippo pathway regulates sensory organ development via caspase-dependent nonapoptotic signaling. Cell Death Dis. 2019 Oct 22; 10(11):797. Wang LH, Baker NE. PMID: 31641110; PMCID: PMC6805860.
      View in: PubMed   Mentions:    Fields:    
    15. Salvador-Warts-Hippo pathway regulates sensory organ development via caspase-dependent nonapoptotic signaling. Cell Death Dis. 2019 09 11; 10(9):669. Wang LH, Baker NE. PMID: 31511495; PMCID: PMC6739336.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    16. Transcriptional and post-transcriptional regulation of extra macrochaetae during Drosophila adult peripheral neurogenesis. Dev Biol. 2019 05 01; 449(1):41-51. Li K, Baker NE. PMID: 30771303; PMCID: PMC6451884.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    17. A potential link between p53, cell competition and ribosomopathy in mammals and in Drosophila. Dev Biol. 2019 02 01; 446(1):17-19. Baker NE, Kiparaki M, Khan C. PMID: 30513308; PMCID: PMC6642609.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimals
    18. A Regulatory Response to Ribosomal Protein Mutations Controls Translation, Growth, and Cell Competition. Dev Cell. 2018 09 24; 46(6):807. Lee CH, Kiparaki M, Blanco J, Folgado V, Ji Z, Kumar A, Rimesso G, Baker NE. PMID: 30253171; PMCID: PMC6269085.
      View in: PubMed   Mentions: 6     Fields:    
    19. Tumor evolution: Multiple induction mechanisms for cell competition. Mol Cell Oncol. 2018; 5(5):e1481812. Kale A, Baker NE. PMID: 30263943; PMCID: PMC6154854.
      View in: PubMed   Mentions:
    20. A Regulatory Response to Ribosomal Protein Mutations Controls Translation, Growth, and Cell Competition. Dev Cell. 2018 08 20; 46(4):456-469.e4. Lee CH, Kiparaki M, Blanco J, Folgado V, Ji Z, Kumar A, Rimesso G, Baker NE. PMID: 30078730; PMCID: PMC6261318.
      View in: PubMed   Mentions: 41     Fields:    Translation:AnimalsCells
    21. Spatial regulation of expanded transcription in the Drosophila wing imaginal disc. PLoS One. 2018; 13(7):e0201317. Wang LH, Baker NE. PMID: 30063727; PMCID: PMC6067730.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    22. All in the family: proneural bHLH genes and neuronal diversity. Development. 2018 05 02; 145(9). Baker NE, Brown NL. PMID: 29720483; PMCID: PMC5992591.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    23. Regulation of the Drosophila ID protein Extra macrochaetae by proneural dimerization partners. Elife. 2018 04 24; 7. Li K, Baker NE. PMID: 29687780; PMCID: PMC5915177.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    24. Ribosomal Protein S12e Has a Distinct Function in Cell Competition. Dev Cell. 2018 01 08; 44(1):42-55.e4. Kale A, Ji Z, Kiparaki M, Blanco J, Rimesso G, Flibotte S, Baker NE. PMID: 29316439; PMCID: PMC5784854.
      View in: PubMed   Mentions: 23     Fields:    Translation:Animals
    25. The Notch pathway regulates the Second Mitotic Wave cell cycle independently of bHLH proteins. Dev Biol. 2017 11 15; 431(2):309-320. Bhattacharya A, Li K, Quiquand M, Rimesso G, Baker NE. PMID: 28919436; PMCID: PMC5658263.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    26. Patterning the eye: A role for the cell cycle? Dev Biol. 2017 10 15; 430(2):263-265. Baker NE. PMID: 28733162.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    27. Mechanisms of cell competition emerging from Drosophila studies. Curr Opin Cell Biol. 2017 10; 48:40-46. Baker NE. PMID: 28600967; PMCID: PMC5591771.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansAnimalsCells
    28. Local Cell Death Changes the Orientation of Cell Division in the Developing Drosophila Wing Imaginal Disc Without Using Fat or Dachsous as Orienting Signals. PLoS One. 2016; 11(12):e0167637. Kale A, Rimesso G, Baker NE. PMID: 28030539; PMCID: PMC5193341.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    29. Whole-Genome Sequencing and iPLEX MassARRAY Genotyping Map an EMS-Induced Mutation Affecting Cell Competition in Drosophila melanogaster. G3 (Bethesda). 2016 10 13; 6(10):3207-3217. Lee CH, Rimesso G, Reynolds DM, Cai J, Baker NE. PMID: 27574103; PMCID: PMC5068942.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    30. E Proteins and ID Proteins: Helix-Loop-Helix Partners in Development and Disease. Dev Cell. 2015 Nov 09; 35(3):269-80. Wang LH, Baker NE. PMID: 26555048; PMCID: PMC4684411.
      View in: PubMed   Mentions: 82     Fields:    Translation:HumansAnimals
    31. Mutations in ribosomal proteins: Apoptosis, cell competition, and cancer. Mol Cell Oncol. 2016 Jan; 3(1):e1029065. Baker NE, Kale A. PMID: 27308545; PMCID: PMC4845181.
      View in: PubMed   Mentions: 6  
    32. Salvador-Warts-Hippo pathway in a developmental checkpoint monitoring helix-loop-helix proteins. Dev Cell. 2015 Jan 26; 32(2):191-202. Wang LH, Baker NE. PMID: 25579975; PMCID: PMC4308471.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    33. Signaling by the engulfment receptor draper: a screen in Drosophila melanogaster implicates cytoskeletal regulators, Jun N-terminal Kinase, and Yorkie. Genetics. 2015 Jan; 199(1):117-34. Fullard JF, Baker NE. PMID: 25395664; PMCID: PMC4286677.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    34. Metabolism and the other fat: a protocadherin in mitochondria. Cell. 2014 Sep 11; 158(6):1240-1241. Baker NE, Jenny A. PMID: 25215484.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    35. Eye development. Methods. 2014 Jun 15; 68(1):252-9. Baker NE, Li K, Quiquand M, Ruggiero R, Wang LH. PMID: 24784530; PMCID: PMC4073679.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimals
    36. Developmental regulation of nucleolus size during Drosophila eye differentiation. PLoS One. 2013; 8(3):e58266. Baker NE. PMID: 23472166; PMCID: PMC3589261.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    37. Mitosis in neurons: Roughex and APC/C maintain cell cycle exit to prevent cytokinetic and axonal defects in Drosophila photoreceptor neurons. PLoS Genet. 2012; 8(11):e1003049. Ruggiero R, Kale A, Thomas B, Baker NE. PMID: 23209426; PMCID: PMC3510051.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    38. The role of the bHLH protein hairy in morphogenetic furrow progression in the developing Drosophila eye. PLoS One. 2012; 7(10):e47503. Bhattacharya A, Baker NE. PMID: 23118874; PMCID: PMC3485281.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    39. A network of broadly expressed HLH genes regulates tissue-specific cell fates. Cell. 2011 Nov 11; 147(4):881-92. Bhattacharya A, Baker NE. PMID: 22078884; PMCID: PMC3268347.
      View in: PubMed   Mentions: 53     Fields:    Translation:HumansAnimalsCells
    40. A dynamical model of ommatidial crystal formation. Proc Natl Acad Sci U S A. 2011 Jul 05; 108(27):11145-50. Lubensky DK, Pennington MW, Shraiman BI, Baker NE. PMID: 21690337; PMCID: PMC3131319.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    41. Retinal determination genes function along with cell-cell signals to regulate Drosophila eye development: examples of multi-layered regulation by master regulators. Bioessays. 2011 Jul; 33(7):538-46. Baker NE, Firth LC. PMID: 21607995; PMCID: PMC4300108.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    42. Proximodistal patterning in the Drosophila leg: models and mutations. Genetics. 2011 Apr; 187(4):1003-10. Baker NE. PMID: 21478472; PMCID: PMC3070510.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    43. Cell competition. Curr Biol. 2011 Jan 11; 21(1):R11-5. Baker NE. PMID: 21215926.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    44. Individual carboxypeptidase D domains have both redundant and unique functions in Drosophila development and behavior. Cell Mol Life Sci. 2010 Sep; 67(17):2991-3004. Sidyelyeva G, Wegener C, Schoenfeld BP, Bell AJ, Baker NE, McBride SM, Fricker LD. PMID: 20386952; PMCID: PMC2922403.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    45. Cell cycle arrest by a gradient of Dpp signaling during Drosophila eye development. BMC Dev Biol. 2010 Mar 09; 10:28. Firth LC, Bhattacharya A, Baker NE. PMID: 20214806; PMCID: PMC2846880.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    46. Oriented cell division as a response to cell death and cell competition. Curr Biol. 2009 Nov 17; 19(21):1821-6. Li W, Kale A, Baker NE. PMID: 19853449; PMCID: PMC2807641.
      View in: PubMed   Mentions: 33     Fields:    Translation:AnimalsCells
    47. Regulation of Hh signal transduction as Drosophila eye differentiation progresses. Dev Biol. 2009 Nov 15; 335(2):356-66. Baker NE, Bhattacharya A, Firth LC. PMID: 19761763; PMCID: PMC2846834.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    48. Clearance of apoptotic corpses. Apoptosis. 2009 Aug; 14(8):1029-37. Fullard JF, Kale A, Baker NE. PMID: 19291407.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansAnimalsCells
    49. Retinal determination genes as targets and possible effectors of extracellular signals. Dev Biol. 2009 Mar 15; 327(2):366-75. Firth LC, Baker NE. PMID: 19135045; PMCID: PMC2650007.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    50. The HLH protein Extramacrochaetae is required for R7 cell and cone cell fates in the Drosophila eye. Dev Biol. 2009 Mar 15; 327(2):288-300. Bhattacharya A, Baker NE. PMID: 19118542; PMCID: PMC2847366.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    51. Cell competition and its possible relation to cancer. Cancer Res. 2008 Jul 15; 68(14):5505-7. Baker NE, Li W. PMID: 18632598.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansAnimalsCells
    52. Competition between Delta and the Abruptex domain of Notch. BMC Dev Biol. 2008 Jan 21; 8:4. Pei Z, Baker NE. PMID: 18208612; PMCID: PMC2267168.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansAnimalsCells
    53. The active role of corpse engulfment pathways during cell competition. Fly (Austin). 2007 Sep-Oct; 1(5):274-8. Li W, Baker NE. PMID: 18836313.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    54. Patterning signals and proliferation in Drosophila imaginal discs. Curr Opin Genet Dev. 2007 Aug; 17(4):287-93. Baker NE. PMID: 17624759.
      View in: PubMed   Mentions: 51     Fields:    Translation:AnimalsCells
    55. Engulfment is required for cell competition. Cell. 2007 Jun 15; 129(6):1215-25. Li W, Baker NE. PMID: 17574031.
      View in: PubMed   Mentions: 103     Fields:    Translation:AnimalsCells
    56. Spitz from the retina regulates genes transcribed in the second mitotic wave, peripodial epithelium, glia and plasmatocytes of the Drosophila eye imaginal disc. Dev Biol. 2007 Jul 15; 307(2):521-38. Firth LC, Baker NE. PMID: 17553483; PMCID: PMC2140239.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    57. Expanded and fat regulate growth and differentiation in the Drosophila eye through multiple signaling pathways. Dev Biol. 2007 May 01; 305(1):187-201. Tyler DM, Baker NE. PMID: 17359963; PMCID: PMC2075468.
      View in: PubMed   Mentions: 54     Fields:    Translation:AnimalsCells
    58. Genes affecting cell competition in Drosophila. Genetics. 2007 Feb; 175(2):643-57. Tyler DM, Li W, Zhuo N, Pellock B, Baker NE. PMID: 17110495; PMCID: PMC1800612.
      View in: PubMed   Mentions: 87     Fields:    Translation:AnimalsCells
    59. Characterization of the molecular basis of the Drosophila mutations in carboxypeptidase D. Effect on enzyme activity and expression. J Biol Chem. 2006 May 12; 281(19):13844-13852. Sidyelyeva G, Baker NE, Fricker LD. PMID: 16556608.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCells
    60. Notch activity opposes Ras-induced differentiation during the Second Mitotic Wave of the developing Drosophila eye. BMC Dev Biol. 2006 Feb 21; 6:8. Yang L, Baker NE. PMID: 16504047; PMCID: PMC1420272.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    61. Analyses of RAS regulation of eye development in Drosophila melanogaster. Methods Enzymol. 2006; 407:711-21. Firth LC, Li W, Zhang H, Baker NE. PMID: 16757364.
      View in: PubMed   Mentions: 16     Fields:    Translation:Animals
    62. Extracellular signals responsible for spatially regulated proliferation in the differentiating Drosophila eye. Dev Cell. 2005 Apr; 8(4):541-51. Firth LC, Baker NE. PMID: 15809036.
      View in: PubMed   Mentions: 84     Fields:    Translation:AnimalsCells
    63. Atonal points the way- protein-protein interactions and developmental biology. Dev Cell. 2004 Nov; 7(5):632-4. Baker NE. PMID: 15525524.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    64. The roles of cis-inactivation by Notch ligands and of neuralized during eye and bristle patterning in Drosophila. BMC Dev Biol. 2004 Apr 27; 4:5. Li Y, Baker NE. PMID: 15113404; PMCID: PMC420236.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    65. The pineapple eye gene is required for survival of Drosophila imaginal disc cells. Genetics. 2003 Dec; 165(4):1869-79. Shi W, Stampas A, Zapata C, Baker NE. PMID: 14704172; PMCID: PMC1462889.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    66. EGF receptor signaling: a prickly proposition. Curr Biol. 2003 Sep 30; 13(19):R773-4. Firth LC, Baker NE. PMID: 14521857.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    67. Deciphering synergistic and redundant roles of Hedgehog, Decapentaplegic and Delta that drive the wave of differentiation in Drosophila eye development. Development. 2003 Nov; 130(21):5229-39. Fu W, Baker NE. PMID: 12954721.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    68. Scabrous and Gp150 are endosomal proteins that regulate Notch activity. Development. 2003 Jul; 130(13):2819-27. Li Y, Fetchko M, Lai ZC, Baker NE. PMID: 12756167.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    69. Notch activity in neural cells triggered by a mutant allele with altered glycosylation. Development. 2003 Jul; 130(13):2829-40. Li Y, Lei L, Irvine KD, Baker NE, Li L. PMID: 12756168.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    70. Cell cycle withdrawal, progression, and cell survival regulation by EGFR and its effectors in the differentiating Drosophila eye. Dev Cell. 2003 Mar; 4(3):359-69. Yang L, Baker NE. PMID: 12636917.
      View in: PubMed   Mentions: 49     Fields:    Translation:AnimalsCells
    71. Size isn't everything. Bioessays. 2003 Jan; 25(1):5-8. Tyler D, Baker NE. PMID: 12508275.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    72. NOTCH and the patterning of ommatidial founder cells in the developing Drosophila eye. Results Probl Cell Differ. 2002; 37:35-58. Baker NE. PMID: 25707068.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
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