Pratik Prashant Shah

Photo of Pratik Prashant Shah
Title(s)Assistant Professor, Pathology
SchoolSchool of Medicine
Address1001 Health Sciences Road
Irvine CA 92697-3950
Phone(949) 824-8576
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    -Faculty Member and Professor, Pathology, Director Computational Medicine Research Program, School of Medicine

    -Faculty Member and Professor, Biomedical Engineering, The Henry Samueli School of Engineering

    -Faculty Member and Professor, Electrical Engineering and Computer Science, The Henry Samueli School of Engineering

    Research Overview: Dr. Pratik Shah is the Principal Investigator and director of a computational medicine research program. The lab focuses on hypothesis-driven deep learning, generative AI, biomedical engineering, and clinical research to develop medical technologies for diagnosing and treating cancer and infectious diseases. This research invents novel deep learning, biological, and statistical methods to tackle challenges in personalized medicine. Dr. Shah's work includes advancements in generating medical images for unbiased, patient-centered care, and evaluating the impact of clinical decision-making on infectious diseases and antimicrobial therapy, within a unified theoretical and methodological framework. Recent work from the lab has been published in Cell Press journals including Cell Reports Methods and Trends in Pharmacological Sciences; Nature Digital Medicine; the Journal of the American Medical Association Network; leading machine learning conferences, and workshop proceedings of The National Academies of Sciences, Engineering, and Medicine. Dr. Shah and his research group are developing a dynamic, living-systems framework for computational medicine, transitioning from static models to real-time, systems-wide perspectives on molecular and clinical processes. Their goal is to invent, clinically validate, and deploy trustworthy generative AI medical technologies that improve patient outcomes and public health.


    Short Bio: Dr. Pratik Shah is a professor at the University of California and the principal investigator and director of a computational medicine research program. Dr. Shah holds academic appointments in Pathology & Laboratory Medicine and joint appointments in Electrical Engineering & Computer Science and Biomedical Engineering. He serves as a Special Government Employee for the U.S. Food and Drug Administration and was an invited expert panelist at the inaugural FDA Digital Health Advisory Committee meeting on generative AI-enabled devices. In 2026, he delivered the plenary keynote at SCOPE X, a national conference on data strategies and AI innovation in clinical research. Recent work from his lab has been published in Cell Press journals including Cell Reports Methods and Trends in Pharmacological Sciences; Nature Digital Medicine; the Journal of the American Medical Association Network; leading machine learning conferences, and workshop proceedings of The National Academies of Sciences, Engineering, and Medicine. Previously, Dr. Shah was a Principal Investigator at the Massachusetts Institute of Technology (MIT), where he led a computational medicine research program. He also served as principal investigator for a memorandum of understanding with the U.S. FDA and MIT, aimed at establishing AI and machine learning research ecosystems for clinical development. Dr. Shah holds a BS, MS, and PhD in biological and data sciences and completed postdoctoral fellowship training at the Broad Institute of MIT and Harvard, Massachusetts General Hospital, and Harvard Medical School.

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    Broad Institute of MIT & Harvard, Harvard Medical School, Cambridge, MAPostdoc2014ECOR Fund for Medical Discovery Fellow
    Collapse awards and honors
    University of California, Irvine2026  - 2026Chancellor’s Award for Trainee Mentorship & Support
    United States FDA2024  - 2028Special Government Employee
    TED Conferences2019  - 2021TED Senior Fellow
    American Association for the Advancement of Science (AAAS)2018  - 2019AAAS Lemelson Foundation Invention Ambassador
    TED Conferences2017  - 2018TED Fellow
    Massachusetts General Hospital, Harvard Medical School2010  - 2011ECOR Fund for Medical Discovery Independent Fellowship Award
    American Society for Microbiology2009  - 2009Raymond W. Sarber National Best PhD Dissertation Award

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    Virtual Digital Histopathology with Explainable Deep Learning for Prostate Diagnosis
    NIH/NCI R21Sep 1, 2024 - Aug 31, 2027
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Deep learning for generating computational PIN-4 immunohistochemistry staining from prostate biopsy H&E images. Accepted at 25th IEEE International Conference on Machine Learning and Applications. 2026. https://doi.org/10.48550/arXiv.2606.01871. 2026. Tran V, Shah P*. . View Publication.
    2. Generative deep learning for computational destaining and restaining of unregistered digital pathology images. Accepted at 25th IEEE International Conference on Machine Learning and Applications. 2026. https://doi.org/10.48550/arXiv.2605.14251. 2026. Kulkarni A, Lowe A, Shah P*. . View Publication.
    3. Deep Learning with Uncertainty Quantification for Predicting the Segmentation Dice Coefficient of Prostate Cancer Biopsy Images. 23rd IEEE International Conference on Machine Learning and Applications (ICMLA). DOI: 10.1109/ICMLA61862.2024.00178. 2024; 1158-1163. Xie A, El Fatimi E, Ghosal S, Shah P*. . View Publication.
    4. Uncertainty Quantified Deep Learning and Regression Analysis Framework for Image Segmentation of Skin Cancer Lesions. 23rd IEEE International Conference on Machine Learning and Applications (ICMLA). DOI: 10.1109/ICMLA61862.2024.00080. 2024; 546-553. El Fatimi E, Shah P*. . View Publication.
    5. A deep-learning toolkit for visualization and interpretation of segmented medical images. Cell Rep Methods. 2021 11 22; 1(7):100107. Ghosal S, Shah P. PMID: 35474999; PMCID: PMC9017181.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    6. Use of Deep Learning to Develop and Analyze Computational Hematoxylin and Eosin Staining of Prostate Core Biopsy Images for Tumor Diagnosis. JAMA Netw Open. 2020 05 01; 3(5):e205111. Rana A, Lowe A, Lithgow M, Horback K, Janovitz T, Da Silva A, Tsai H, Shanmugam V, Bayat A, Shah P. PMID: 32432709; PMCID: PMC7240356.
      View in: PubMed   Mentions: 34     Fields:    Translation:Humans
    7. Artificial intelligence and machine learning in clinical development: a translational perspective. NPJ Digit Med. 2019; 2:69. Shah P, Kendall F, Khozin S, Goosen R, Hu J, Laramie J, Ringel M, Schork N. PMID: 31372505; PMCID: PMC6659652.
      View in: PubMed   Mentions: 159  
    8. Artificial Intelligence for Clinical Trial Design. Trends Pharmacol Sci. 2019 08; 40(8):577-591. Harrer S, Shah P, Antony B, Hu J. PMID: 31326235.
      View in: PubMed   Mentions: 206     Fields:    Translation:Humans
    9. Reinforcement Learning with Action-Derived Rewards for Chemotherapy and Clinical Trial Dosing Regimen Selection. Proceedings of Machine Learning Research. 2018; 85:161–226. Gregory Yauney, Pratik Shah. . View Publication.
    10. Technology-enabled examinations of cardiac rhythm, optic nerve, oral health, tympanic membrane, gait and coordination evaluated jointly with routine health screenings: an observational study at the 2015 Kumbh Mela in India. BMJ Open. 2018 04 20; 8(4):e018774. Shah P, Yauney G, Gupta O, Patalano Ii V, Mohit M, Merchant R, Subramanian SV. PMID: 29678964; PMCID: PMC5914894.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansPHPublic Health
    11. Detection of Biomarkers of Periodontal Disease in Human Saliva Using Stabilized, Vertical Flow Immunoassays. ACS Sens. 2017 11 22; 2(11):1589-1593. Yee EH, Lathwal S, Shah PP, Sikes HD. PMID: 29090909.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
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