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Ya Cui

Title(s)Assistant Professor In Residence, Biological Chemistry
SchoolSchool of Medicine
Address1001 Health Sciences Road
Irvine CA 92697-3950
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Multi-omic quantitative trait loci link tandem repeat size variation to gene regulation in human brain. Nat Genet. 2025 Feb; 57(2):369-378. Cui Y, Arnold FJ, Li JS, Wu J, Wang D, Philippe J, Colwin MR, Michels S, Chen C, Sallam T, Thompson LM, La Spada AR, Li W. PMID: 39809899.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    2. Advancements and future perspectives of human tandem repeats. Sci Bull (Beijing). 2024 Dec 15; 69(23):3633-3636. Ye W, Li JS, Li W, Cui Y. PMID: 39164144.
      View in: PubMed   Mentions:    Fields:    
    3. A genome-wide spectrum of tandem repeat expansions in 338,963 humans. Cell. 2024 Apr 25; 187(9):2336-2341.e5. Cui Y, Ye W, Li JS, Li JJ, Vilain E, Sallam T, Li W. PMID: 38582080; PMCID: PMC11065452.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    4. Multimodal epigenetic sequencing analysis (MESA) of cell-free DNA for non-invasive colorectal cancer detection. Genome Med. 2024 01 16; 16(1):9. Li Y, Xu J, Chen C, Lu Z, Wan D, Li D, Li JS, Sorg AJ, Roberts CC, Mahajan S, Gallant MA, Pinkoviezky I, Cui Y, Taggart DJ, Li W. PMID: 38225592; PMCID: PMC10790422.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    5. Alternative polyadenylation transcriptome-wide association study identifies APA-linked susceptibility genes in brain disorders. Nat Commun. 2023 02 03; 14(1):583. Cui Y, Arnold FJ, Peng F, Wang D, Li JS, Michels S, Wagner EJ, La Spada AR, Li W. PMID: 36737438; PMCID: PMC9898543.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansCells
    6. 3'aQTL-atlas: an atlas of 3'UTR alternative polyadenylation quantitative trait loci across human normal tissues. Nucleic Acids Res. 2022 01 07; 50(D1):D39-D45. Cui Y, Peng F, Wang D, Li Y, Li JS, Li L, Li W. PMID: 34432052; PMCID: PMC8728222.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    7. The concurrence of DNA methylation and demethylation is associated with transcription regulation. Nat Commun. 2021 09 06; 12(1):5285. Shi J, Xu J, Chen YE, Li JS, Cui Y, Shen L, Li JJ, Li W. PMID: 34489442; PMCID: PMC8421433.
      View in: PubMed   Mentions: 41     Fields:    Translation:HumansAnimalsCells
    8. From Reads to Insights: Integrative Pipelines for Biological Interpretation of ATAC-seq Data. Genomics Proteomics Bioinformatics. 2021 08; 19(4):519-521. Cui Y, Li JS, Li W. PMID: 34273562; PMCID: PMC9039543.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    9. An atlas of alternative polyadenylation quantitative trait loci contributing to complex trait and disease heritability. Nat Genet. 2021 07; 53(7):994-1005. Li L, Huang KL, Gao Y, Cui Y, Wang G, Elrod ND, Li Y, Chen YE, Ji P, Peng F, Russell WK, Wagner EJ, Li W. PMID: 33986536.
      View in: PubMed   Mentions: 85     Fields:    Translation:HumansCells
    10. Cellular Heterogeneity-Adjusted cLonal Methylation (CHALM) improves prediction of gene expression. Nat Commun. 2021 01 15; 12(1):400. Xu J, Shi J, Cui X, Cui Y, Li JJ, Goel A, Chen X, Issa JP, Su J, Li W. PMID: 33452255; PMCID: PMC7811027.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCells
    11. NG-Circos: next-generation Circos for data visualization and interpretation. NAR Genom Bioinform. 2020 Sep; 2(3):lqaa069. Cui Y, Cui Z, Xu J, Hao D, Shi J, Wang D, Xiao H, Duan X, Chen R, Li W. PMID: 33575618; PMCID: PMC7671351.
      View in: PubMed   Mentions: 6     Fields:    
    12. Effective birth control use among women at risk for unintended pregnancy in Los Angeles, California. Womens Health Issues. 2012 Jul-Aug; 22(4):e351-8. Phares TM, Cui Y, Baldwin S. PMID: 22575863.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansPHPublic Health
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