Tetyana Vasylyeva

Title(s)Associate Professor, Pop Hlth and Disease Prevention
SchoolUC Irvine Joe C. Wen School of Population & Public Health
Address856 Health Sciences Quad
University of California, Irvine
Irvine CA 92697-3957
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Atlas of glomerular disease-specific genetic effects on blood transcriptome. medRxiv. 2026 Jul 20. Liu L, Wang C, Kravets O, Fermin D, Eichinger F, Zanoni F, Khan A, Zhang JY, Ouyang Y, Li Q, Hamilton P, Kalra PA, Chinnadurai R, Reidy K, Kopp J, Mucha K, Smith C, Smith AR, Mcnulty M, Eddy S, Nair V, Helmuth ME, Vasylyeva TL, Smoyer WE, Berthier C, Parekh R, Wenderfer SE, Onugha E, Martin T, Sokolova K, Sealfon RSG, Theesfeld CL, Parsa A, Gbadegesin R, Sampson M, Sanna-Cherchi S, Troyanskaya OG, Paul DS, Petrovski S, Goldstein D, Mariani LH, Gharavi A, Columbia Genomics Consortium, NEPTUNE Consortium, CureGN Consortium, Kretzler M, Kiryluk K. PMID: 42396300; PMCID: PMC13321184.
      View in: PubMed   Mentions:
    2. HIV Transmission Dynamics in Greater Mexico City are Shaped by Dense Spatial Mixing. Res Sq. 2026 Jun 16. Escalera-Zamudio M, Ortiz EL, Morales CG, Cruz-Bonilla E, Flores SG, Weaver S, Florentino MM, Trejo DT, Conn VD, Porras RC, Sanchez EZ, Sanchez SDA, Soto JG, Memije KN, Flores JM, Guzman A, Mendiola RG, Iracheta P, Gonzalez VR, Morales VQ, Gonzalez IM, Rodriguez MB, Flores RC, Rodriguez AG, Sanchez DL, Sandoval MC, Barreda MB, Hernandez-Rosales M, Dellicour S, Vasylyeva T, Wertheim J, Rios SA. PMID: 42370292; PMCID: PMC13308395.
      View in: PubMed   Mentions:
    3. HIV Transmission Dynamics in Greater Mexico City are Shaped by Dense Spatial Mixing. medRxiv. 2026 May 27. Escalera-Zamudio M, López Ortiz E, García Morales C, Cruz-Bonilla E, Guerrero Flores S, Weaver S, Matías Florentino M, Tapia Trejo D, Dávila Conn V, CIENI-CEC Consortium, Hernandez M, Dellicour S, Vasylyeva TI, Wertheim JO, Ávila Ríos S. PMID: 42245012; PMCID: PMC13232410.
      View in: PubMed   Mentions:
    4. Nighttime lights as a proxy for conflict intensity and infrastructure recovery in Yemen and Ukraine. Confl Health. 2026 May 11; 20(1). Tarnas MC, Vasylyeva TI, Minin VM, Parker DM. PMID: 42116107.
      View in: PubMed   Mentions:
    5. Parallel algorithms for phylogenetic inference under a structured coalescent approximation. Proc Natl Acad Sci U S A. 2026 May 05; 123(18):e2602412123. Shao Y, Suchard MA, Rambaut A, Ji X, Lemey P, Vasylyeva TI, Baele G. PMID: 42048453; PMCID: PMC13143046.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    6. Nighttime lights as a proxy for conflict intensity and infrastructure recovery in Yemen and Ukraine. Res Sq. 2026 Feb 06. Tarnas MC, Vasylyeva TI, Minin VM, Parker DM. PMID: 41674820; PMCID: PMC12889831.
      View in: PubMed   Mentions:
    7. Synonymous substitution rate slowdown preceding the emergence of SARS-CoV-2 variants and during persistent infections. medRxiv. 2026 Jan 28. Havens JL, Gangavarapu K, Wang JC, Taki F, Luoma E, Pekar JE, Amin H, Lonardo SD, Omoregie E, Hughes S, Andersen KG, Vasylyeva TI, Suchard MA, Wertheim JO. PMID: 41646655; PMCID: PMC12870713.
      View in: PubMed   Mentions:
    8. VANTAGE: van-based real-time HIV sequencing for transmission mapping and drug resistance profiling in war-affected Ukraine. AIDS. 2026 Jan 01; 40(1):123-126. Kovalenko G, Liulchuk MG, Filippovych M, Smyrnov P, Strathdee SA, Vasylyeva TI. PMID: 41489325; PMCID: PMC13189857.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    9. Congenital and infantile nephrotic syndrome: genotype-phenotype associations. Pediatr Res. 2025 Dec 03. Islam MS, Constantinescu AR, Smoyer WE, Mattoo TK, Annaim AA, Plautz E, Rapalo BW, Benoit L, Myette RL, Kallash M, Wenderfer SE, Twombley K, Kamigaki Y, Muff-Luett M, Rheault MN, Vasylyeva TL. PMID: 41339767.
      View in: PubMed   Mentions:
    10. "Listening Neglect": A Mixed-Methods Study of How Families Feel Unheard in Hospitals. Pediatrics. 2025 Oct 01; 156(4). Soni M, Fan AL, Micolisin E, Elborki M, Olan J, D'Anna RK, Gray KP, Arce JE, Bailey B, Calaman S, Cray S, Fleischer A, Haskell H, Jagadeesh T, Kendall E, McDermott M, McDonald S, Melton KT, Nabower AM, Serra T, Schord S, Shaughnessy EE, Texler C, Vara T, Vasylyeva TL, Baird JD, Khan A. PMID: 40889788.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    11. Parallel algorithms for phylogenetic inference under a structured coalescent approximation. bioRxiv. 2025 Sep 24. Shao Y, Suchard MA, Rambaut A, Ji X, Lemey P, Vasylyeva TI, Baele G. PMID: 41040339; PMCID: PMC12485945.
      View in: PubMed   Mentions:
    12. Genomic epidemiology of mpox virus during the 2022 outbreak in New York City. Nat Commun. 2025 Sep 24; 16(1):8354. Akther S, Su M, Wang JC, Amin H, Taki F, De La Cruz N, Chowdhury M, Clabby T, Kopping E, Ruiz VE, Leelawong M, Latash J, Johnson K, Baumgartner J, Wong M, Olsen A, Fowler RC, Pekar JE, Havens JL, Vasylyeva TI, Wertheim JO, Hughes S, Omoregie E. PMID: 40993147; PMCID: PMC12460763.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCellsPHPublic Health
    13. Traumatic events exposure in men who have sex with men with and without experience of displacement in Ukraine. BMJ Glob Health. 2025 Jul 30; 10(7). King N, Talebloo J, Smyrnov P, Vasylyeva TI. PMID: 40738503; PMCID: PMC12314936.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    14. Phylogeographic and genetic network assessment of COVID-19 mitigation protocols on SARS-CoV-2 transmission in university campus residences. EBioMedicine. 2025 Jun; 116:105729. Wertheim JO, Vasylyeva TI, Wood RJ, Cantrell K, Contreras SP, Feldheim A, Goyal R, Havens JL, Knight R, Laurent LC, Moshiri N, Neuhard R, Sathe S, Satterlund A, Scioscia A, Song AY, SEARCH Alliance, Schooley RT, Anderson CM, Martin NK. PMID: 40347833; PMCID: PMC12139431.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    15. The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2. Cell. 2025 Jun 12; 188(12):3167-3183.e18. Pekar JE, Lytras S, Ghafari M, Magee AF, Parker E, Wang Y, Ji X, Havens JL, Katzourakis A, Vasylyeva TI, Suchard MA, Hughes AC, Hughes J, Rambaut A, Robertson DL, Dellicour S, Worobey M, Wertheim JO, Lemey P. PMID: 40339581; PMCID: PMC12230244.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    16. Transmission dynamics of the 2022 mpox epidemic in New York City. Nat Med. 2025 May; 31(5):1464-1473. Pekar JE, Wang Y, Wang JC, Shao Y, Taki F, Forgione LA, Amin H, Clabby T, Johnson K, Torian LV, Braunstein SL, Pathela P, Omoregie E, Hughes S, Suchard MA, Vasylyeva TI, Lemey P, Wertheim JO. PMID: 40133528; PMCID: PMC12092259.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCellsPHPublic Health
    17. HIV and hepatitis C Virus in internally displaced people with and without injection drug use experience in the region of Shida Kartli, Georgia. BMC Res Notes. 2024 Oct 20; 17(1):315. Trovato A, Gogia M, Aslanikashvili A, Kasrashvili T, Kovalenko G, Yakovleva A, Skaathun B, Vasylyeva TI. PMID: 39428495; PMCID: PMC11492736.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    18. Genome-wide studies define new genetic mechanisms of IgA vasculitis. medRxiv. 2024 Oct 11. Liu L, Zhu L, Monteiro-Martins S, Griffin A, Vlahos LJ, Fujita M, Berrouet C, Zanoni F, Marasa M, Zhang JY, Zhou XJ, Caliskan Y, Akchurin O, Al-Akash S, Jankauskiene A, Bodria M, Chishti A, Esposito C, Esposito V, Claes D, Tesar V, Davis TK, Samsonov D, Kaminska D, Hryszko T, Zaza G, Flynn JT, Iorember F, Lugani F, Rizk D, Julian BA, Hidalgo G, Kallash M, Biancone L, Amoroso A, Bono L, Mani LY, Vogt B, Lin F, Sreedharan R, Weng P, Ranch D, Xiao N, Quiroga A, Matar RB, Rheault MN, Wenderfer S, Selewski D, Lundberg S, Silva C, Mason S, Mahan JD, Vasylyeva TL, Mucha K, Foroncewicz B, Paczek L, Florczak M, Olszewska M, Gradzinska A, Szczepanska M, Machura E, Badenski A, Krakowczyk H, Sikora P, Kwella N, Miklaszewska M, Drozdz D, Zaniew M, Pawlaczyk K, SiniewiczLuzenczyk K, Bomback AS, Appel GB, Izzi C, Scolari F, Materna-Kiryluk A, Mizerska-Wasiak M, Berthelot L, Pillebout E, Monteiro RC, Novak J, Green TJ, Smoyer WE, Hastings MC, Wyatt RJ, Nelson R, Martin J, González-Gay MA, De Jager PL, Köttgen A, Califano A, Gharavi AG, Zhang H, Kiryluk K. PMID: 39417133; PMCID: PMC11482997.
      View in: PubMed   Mentions: 1  
    19. Genomic epidemiology reveals 2022 mpox epidemic in New York City governed by heavy-tailed sexual contact networks. medRxiv. 2024 Aug 01. Pekar JE, Wang Y, Wang JC, Shao Y, Taki F, Forgione LA, Amin H, Clabby T, Johnson K, Torian LV, Braunstein SL, Pathela P, Omoregie E, Hughes S, Suchard MA, Vasylyeva TI, Lemey P, Wertheim JO. PMID: 39132479; PMCID: PMC11312668.
      View in: PubMed   Mentions:
    20. The role of socio-economic disparities in the relative success and persistence of SARS-CoV-2 variants in New York City in early 2021. PLoS Pathog. 2024 Jun; 20(6):e1012288. Vasylyeva TI, Havens JL, Wang JC, Luoma E, Hassler GW, Amin H, Di Lonardo S, Taki F, Omoregie E, Hughes S, Wertheim JO. PMID: 38900824; PMCID: PMC11218943.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    21. Integrated Genomic and Social Network Analyses of SARS-CoV-2 Transmission in the Healthcare Setting. Clin Infect Dis. 2024 05 15; 78(5):1204-1213. Keehner J, Abeles SR, Longhurst CA, Horton LE, Myers FE, Riggs-Rodriguez L, Ahmad M, Baxter S, Boussina A, Cantrell K, Cardenas P, De Hoff P, El-Kareh R, Holland J, Ikeda D, Kurashige K, Laurent LC, SEARCH Alliance, Lucas A, Pride D, Sathe S, Tran AR, Vasylyeva TI, Yeo G, Knight R, Wertheim JO, Torriani FJ. PMID: 38227643; PMCID: PMC11093679.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCellsPHPublic Health
    22. HIV-1 transmission dynamics among people who inject drugs on the US/Mexico border during the COVID-19 pandemic: a prosepective cohort study. Lancet Reg Health Am. 2024 May; 33:100751. Skaathun B, Strathdee SA, Shrader CH, Nacht CL, Borquez A, Artamonova I, Harvey-Vera A, Vera CF, Rangel G, Ignacio C, Woodworth B, Chaillon A, Vasylyeva TI. PMID: 38711788; PMCID: PMC11070707.
      View in: PubMed   Mentions: 5  
    23. Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models. PLoS Comput Biol. 2024 Mar; 20(3):e1011640. Shao Y, Magee AF, Vasylyeva TI, Suchard MA. PMID: 38551979; PMCID: PMC11006205.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCellsPHPublic Health
    24. The Effect of Immunoglobulin G on the Humoral Immunity in Patients with Tuberculosis/HIV Coinfection. AIDS Res Hum Retroviruses. 2024 04; 40(4):246-252. Matsegora NA, Kaprosh AV, Vasylyeva TI, Antonenko PB, Antonenko K. PMID: 38164121.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    25. Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models. bioRxiv. 2023 Nov 02. Shao Y, Magee AF, Vasylyeva TI, Suchard MA. PMID: 37961423; PMCID: PMC10634968.
      View in: PubMed   Mentions:
    26. Will the Russian war in Ukraine unleash larger epidemics of HIV, TB and associated conditions and diseases in Ukraine? Harm Reduct J. 2023 09 01; 20(1):119. Friedman SR, Smyrnov P, Vasylyeva TI. PMID: 37658448; PMCID: PMC10472698.
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    27. The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2. bioRxiv. 2023 Jul 12. Pekar JE, Lytras S, Ghafari M, Magee AF, Parker E, Havens JL, Katzourakis A, Vasylyeva TI, Suchard MA, Hughes AC, Hughes J, Robertson DL, Dellicour S, Worobey M, Wertheim JO, Lemey P. PMID: 37502985; PMCID: PMC10369958.
      View in: PubMed   Mentions: 2  
    28. Hepatitis C Virus in people with experience of injection drug use following their displacement to Southern Ukraine before 2020. BMC Infect Dis. 2023 Jul 03; 23(1):446. Yakovleva A, Kovalenko G, Redlinger M, Smyrnov P, Tymets O, Korobchuk A, Kotlyk L, Kolodiazieva A, Podolina A, Cherniavska S, Antonenko P, Strathdee SA, Friedman SR, Goodfellow I, Wertheim JO, Bortz E, Meredith L, Vasylyeva TI. PMID: 37400776; PMCID: PMC10316605.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    29. Genome-wide association analyses define pathogenic signaling pathways and prioritize drug targets for IgA nephropathy. Nat Genet. 2023 07; 55(7):1091-1105. Kiryluk K, Sanchez-Rodriguez E, Zhou XJ, Zanoni F, Liu L, Mladkova N, Khan A, Marasa M, Zhang JY, Balderes O, Sanna-Cherchi S, Bomback AS, Canetta PA, Appel GB, Radhakrishnan J, Trimarchi H, Sprangers B, Cattran DC, Reich H, Pei Y, Ravani P, Galesic K, Maixnerova D, Tesar V, Stengel B, Metzger M, Canaud G, Maillard N, Berthoux F, Berthelot L, Pillebout E, Monteiro R, Nelson R, Wyatt RJ, Smoyer W, Mahan J, Samhar AA, Hidalgo G, Quiroga A, Weng P, Sreedharan R, Selewski D, Davis K, Kallash M, Vasylyeva TL, Rheault M, Chishti A, Ranch D, Wenderfer SE, Samsonov D, Claes DJ, Akchurin O, Goumenos D, Stangou M, Nagy J, Kovacs T, Fiaccadori E, Amoroso A, Barlassina C, Cusi D, Del Vecchio L, Battaglia GG, Bodria M, Boer E, Bono L, Boscutti G, Caridi G, Lugani F, Ghiggeri G, Coppo R, Peruzzi L, Esposito V, Esposito C, Feriozzi S, Polci R, Frasca G, Galliani M, Garozzo M, Mitrotti A, Gesualdo L, Granata S, Zaza G, Londrino F, Magistroni R, Pisani I, Magnano A, Marcantoni C, Messa P, Mignani R, Pani A, Ponticelli C, Roccatello D, Salvadori M, Salvi E, Santoro D, Gembillo G, Savoldi S, Spotti D, Zamboli P, Izzi C, Alberici F, Delbarba E, Florczak M, Krata N, Mucha K, Paczek L, Niemczyk S, Moszczuk B, Panczyk-Tomaszewska M, Mizerska-Wasiak M, Perkowska-Ptasinska A, Baczkowska T, Durlik M, Pawlaczyk K, Sikora P, Zaniew M, Kaminska D, Krajewska M, Kuzmiuk-Glembin I, Heleniak Z, Bullo-Piontecka B, Liberek T, Debska-Slizien A, Hryszko T, Materna-Kiryluk A, Miklaszewska M, Szczepanska M, Dyga K, Machura E, Siniewicz-Luzenczyk K, Pawlak-Bratkowska M, Tkaczyk M, Runowski D, Kwella N, Drozdz D, Habura I, Kronenberg F, Prikhodina L, van Heel D, Fontaine B, Cotsapas C, Wijmenga C, Franke A, Annese V, Gregersen PK, Parameswaran S, Weirauch M, Kottyan L, Harley JB, Suzuki H, Narita I, Goto S, Lee H, Kim DK, Kim YS, Park JH, Cho B, Choi M, Van Wijk A, Huerta A, Ars E, Ballarin J, Lundberg S, Vogt B, Mani LY, Caliskan Y, Barratt J, Abeygunaratne T, Kalra PA, Gale DP, Panzer U, Rauen T, Floege J, Schlosser P, Ekici AB, Eckardt KU, Chen N, Xie J, Lifton RP, Loos RJF, Kenny EE, Ionita-Laza I, Köttgen A, Julian BA, Novak J, Scolari F, Zhang H, Gharavi AG. PMID: 37337107; PMCID: PMC11824687.
      View in: PubMed   Mentions: 91     Fields:    Translation:Animals
    30. Author Correction: Tracking SARS-COV-2 variants using Nanopore sequencing in Ukraine in 2021. Sci Rep. 2023 Feb 13; 13(1):2555. Yakovleva A, Kovalenko G, Redlinger M, Liulchuk MG, Bortz E, Zadorozhna VI, Scherbinska AM, Wertheim JO, Goodfellow I, Meredith L, Vasylyeva TI. PMID: 36781923; PMCID: PMC9924184.
      View in: PubMed   Mentions:    Fields:    
    31. Pregnancy History and Kidney Disease Progression Among Women Enrolled in Cure Glomerulonephropathy. Kidney Int Rep. 2023 Apr; 8(4):805-817. Reynolds ML, Oliverio AL, Zee J, Hendren EM, O'Shaughnessy MM, Ayoub I, Almaani S, Vasylyeva TL, Twombley KE, Wadhwani S, Steinke JM, Rizk DV, Waldman M, Helmuth ME, Avila-Casado C, Alachkar N, Nester CM, Derebail VK, Hladunewich MA, Mariani LH. PMID: 37069979; PMCID: PMC10105239.
      View in: PubMed   Mentions:
    32. Phylodynamics and migration data help describe HIV transmission dynamics in internally displaced people who inject drugs in Ukraine. PNAS Nexus. 2023 Mar; 2(3):pgad008. Kovalenko G, Yakovleva A, Smyrnov P, Redlinger M, Tymets O, Korobchuk A, Kolodiazieva A, Podolina A, Cherniavska S, Skaathun B, Smith LR, Strathdee SA, Wertheim JO, Friedman SR, Bortz E, Goodfellow I, Meredith L, Vasylyeva TI. PMID: 36896134; PMCID: PMC9991454.
      View in: PubMed   Mentions: 7  
    33. Introduction and Establishment of SARS-CoV-2 Gamma Variant in New York City in Early 2021. J Infect Dis. 2022 12 13; 226(12):2142-2149. Vasylyeva TI, Fang CE, Su M, Havens JL, Parker E, Wang JC, Zeller M, Yakovleva A, Hassler GW, Chowdhury MA, Andersen KG, Hughes S, Wertheim JO. PMID: 35771664; PMCID: PMC9278250.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    34. Left behind on the path to 90-90-90: understanding and responding to HIV among displaced people. J Int AIDS Soc. 2022 11; 25(11):e26031. Vasylyeva TI, Horyniak D, Bojorquez I, Pham MD. PMID: 36352546; PMCID: PMC9646984.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    35. Racial and Ethnic Disparities in Acute Care Utilization Among Patients With Glomerular Disease. Am J Kidney Dis. 2023 03; 81(3):318-328.e1. Krissberg JR, O'Shaughnessy MM, Smith AR, Helmuth ME, Almaani S, Aviles DH, Brathwaite KE, Cai Y, Cattran D, Gbadegesin R, Glenn DA, Greenbaum LA, Iragorri S, Jain K, Khalid M, Kidd J, Kopp J, Lafayette R, Lane JC, Lugani F, Nestor JG, Parekh RS, Reidy K, Selewski DT, Sethna CB, Sperati CJ, Tuttle K, Twombley K, Vasylyeva TL, Weaver DJ, Wenderfer SE, Gibson K, CureGN Consortium. PMID: 36191724; PMCID: PMC9974571.
      View in: PubMed   Mentions:
    36. Tracking SARS-COV-2 variants using Nanopore sequencing in Ukraine in 2021. Sci Rep. 2022 09 21; 12(1):15749. Yakovleva A, Kovalenko G, Redlinger M, Liulchuk MG, Bortz E, Zadorozhna VI, Scherbinska AM, Wertheim JO, Goodfellow I, Meredith L, Vasylyeva TI. PMID: 36131001; PMCID: PMC9491264.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCells
    37. Clinical presentation and management of nephrotic syndrome in the first year of life: A report from the Pediatric Nephrology Research Consortium. Front Pediatr. 2022; 10:988945. Constantinescu AR, Mattoo TK, Smoyer WE, Greenbaum LA, Niu J, Howard N, Muff-Luett M, Benoit EB, Traum A, Annaim AA, Wenderfer SE, Plautz E, Rheault MN, Myette RL, Twombley KE, Kamigaki Y, Wandique-Rapalo B, Kallash M, Vasylyeva TL. PMID: 36210940; PMCID: PMC9534228.
      View in: PubMed   Mentions:
    38. Network-level HIV risk norms are associated with individual-level HIV risk and harm reduction behaviors among people who inject drugs: a latent profile analysis. AIDS Behav. 2023 Feb; 27(2):484-495. Shrader CH, Borquez A, Vasylyeva TI, Chaillon A, Artamanova I, Harvey-Vera A, Vera CF, Rangel G, Strathdee SA, Skaathun B. PMID: 35939177; PMCID: PMC9358371.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    39. The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2. Science. 2022 08 26; 377(6609):960-966. Pekar JE, Magee A, Parker E, Moshiri N, Izhikevich K, Havens JL, Gangavarapu K, Malpica Serrano LM, Crits-Christoph A, Matteson NL, Zeller M, Levy JI, Wang JC, Hughes S, Lee J, Park H, Park MS, Ching Zi Yan K, Lin RTP, Mat Isa MN, Noor YM, Vasylyeva TI, Garry RF, Holmes EC, Rambaut A, Suchard MA, Andersen KG, Worobey M, Wertheim JO. PMID: 35881005; PMCID: PMC9348752.
      View in: PubMed   Mentions: 106     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    40. Detection of SARS-CoV-2 intra-host recombination during superinfection with Alpha and Epsilon variants in New York City. Nat Commun. 2022 06 25; 13(1):3645. Wertheim JO, Wang JC, Leelawong M, Martin DP, Havens JL, Chowdhury MA, Pekar JE, Amin H, Arroyo A, Awandare GA, Chow HY, Gonzalez E, Luoma E, Morang'a CM, Nekrutenko A, Shank SD, Silver S, Quashie PK, Rakeman JL, Ruiz V, Torian LV, Vasylyeva TI, Kosakovsky Pond SL, Hughes S. PMID: 35752633; PMCID: PMC9233664.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCells
    41. Unified European support framework to sustain the HIV cascade of care for people living with HIV including in displaced populations of war-struck Ukraine. Lancet HIV. 2022 06; 9(6):e438-e448. Vasylyev M, Skrzat-Klapaczynska A, Bernardino JI, Sandulescu O, Gilles C, Libois A, Curran A, Spinner CD, Rowley D, Bickel M, Aichelburg MC, Nozza S, Wensing A, Barber TJ, Waters L, Jordans C, Bramer W, Lakatos B, Tovba L, Koval T, Kyrychenko T, Dumchev K, Buhiichyk V, Smyrnov P, Antonyak S, Antoniak S, Vasylyeva TI, Mazhnaya A, Kowalska J, Bhagani S, Rokx C, European AIDS Clinical Society (EACS) Young Investigators (YING). PMID: 35576942.
      View in: PubMed   Mentions: 32     Fields:    Translation:Humans
    42. Unlocking capacities of genomics for the COVID-19 response and future pandemics. Nat Methods. 2022 04; 19(4):374-380. Knyazev S, Chhugani K, Sarwal V, Ayyala R, Singh H, Karthikeyan S, Deshpande D, Baykal PI, Comarova Z, Lu A, Porozov Y, Vasylyeva TI, Wertheim JO, Tierney BT, Chiu CY, Sun R, Wu A, Abedalthagafi MS, Pak VM, Nagaraj SH, Smith AL, Skums P, Pasaniuc B, Komissarov A, Mason CE, Bortz E, Lemey P, Kondrashov F, Beerenwinkel N, Lam TT, Wu NC, Zelikovsky A, Knight R, Crandall KA, Mangul S. PMID: 35396471; PMCID: PMC9467803.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansCellsPHPublic Health
    43. Tracking SARS-COV-2 Variants Using Nanopore Sequencing in Ukraine in Summer 2021. Res Sq. 2021 Nov 30. Yakovleva A, Kovalenko G, Redlinger M, Liulchuk MG, Bortz E, Zadorozhna VI, Scherbinska AM, Wertheim JO, Goodfellow I, Meredith L, Vasylyeva TI. PMID: 34873595; PMCID: PMC8647652.
      View in: PubMed   Mentions:
    44. Detection and characterization of the SARS-CoV-2 lineage B.1.526 in New York. Nat Commun. 2021 08 09; 12(1):4886. West AP, Wertheim JO, Wang JC, Vasylyeva TI, Havens JL, Chowdhury MA, Gonzalez E, Fang CE, Di Lonardo SS, Hughes S, Rakeman JL, Lee HH, Barnes CO, Gnanapragasam PNP, Yang Z, Gaebler C, Caskey M, Nussenzweig MC, Keeffe JR, Bjorkman PJ. PMID: 34373458; PMCID: PMC8352861.
      View in: PubMed   Mentions: 67     Fields:    Translation:HumansCells
    45. Racial-ethnic differences in health-related quality of life among adults and children with glomerular disease. Glomerular Dis. 2021 Aug; 1(3):105-117. Krissberg JR, Helmuth ME, Almaani S, Cai Y, Cattran D, Chatterjee D, Gbadegesin RA, Gibson KL, Glenn DA, Greenbaum LA, Iragorri S, Jain K, Khalid M, Kidd JM, Kopp JB, Lafayette R, Nestor JG, Parekh RS, Reidy KJ, John Sperati C, Tuttle KR, Twombley K, Vasylyeva TL, Weaver DJ, Wenderfer SE, O'Shaughnessy MM. PMID: 34723246; PMCID: PMC8553235.
      View in: PubMed   Mentions:
    46. Global prevalence and phylogeny of hepatitis B virus (HBV) drug and vaccine resistance mutations. J Viral Hepat. 2021 08; 28(8):1110-1120. Mokaya J, Vasylyeva TI, Barnes E, Ansari MA, Pybus OG, Matthews PC. PMID: 33893696; PMCID: PMC8581767.
      View in: PubMed   Mentions:
    47. Detection and characterization of the SARS-CoV-2 lineage B.1.526 in New York. bioRxiv. 2021 Apr 22. West AP, Wertheim JO, Wang JC, Vasylyeva TI, Havens JL, Chowdhury MA, Gonzalez E, Fang CE, Di Lonardo SS, Hughes S, Rakeman JL, Lee HH, Barnes CO, Gnanapragasam PNP, Yang Z, Gaebler C, Caskey M, Nussenzweig MC, Keeffe JR, Bjorkman PJ. PMID: 33907745; PMCID: PMC8077570.
      View in: PubMed   Mentions:
    48. Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK. Science. 2021 02 12; 371(6530):708-712. du Plessis L, McCrone JT, Zarebski AE, Hill V, Ruis C, Gutierrez B, Raghwani J, Ashworth J, Colquhoun R, Connor TR, Faria NR, Jackson B, Loman NJ, O'Toole Á, Nicholls SM, Parag KV, Scher E, Vasylyeva TI, Volz EM, Watts A, Bogoch II, Khan K, COVID-19 Genomics UK (COG-UK) Consortium, Aanensen DM, Kraemer MUG, Rambaut A, Pybus OG. PMID: 33419936; PMCID: PMC7877493.
      View in: PubMed   Mentions: 267     Fields:    Translation:HumansCellsPHPublic Health
    49. Locally adaptive Bayesian birth-death model successfully detects slow and rapid rate shifts. PLoS Comput Biol. 2020 10; 16(10):e1007999. Magee AF, Höhna S, Vasylyeva TI, Leaché AD, Minin VN. PMID: 33112848; PMCID: PMC7652323.
      View in: PubMed   Mentions:
    50. Challenges posed by COVID-19 to people who inject drugs and lessons from other outbreaks. J Int AIDS Soc. 2020 07; 23(7):e25583. Vasylyeva TI, Smyrnov P, Strathdee S, Friedman SR. PMID: 32697423; PMCID: PMC7375066.
      View in: PubMed   Mentions: 94     Fields:    Translation:HumansCellsPHPublic Health
    51. Phylodynamics Helps to Evaluate the Impact of an HIV Prevention Intervention. Viruses. 2020 04 20; 12(4). Vasylyeva TI, Zarebski A, Smyrnov P, Williams LD, Korobchuk A, Liulchuk M, Zadorozhna V, Nikolopoulos G, Paraskevis D, Schneider J, Skaathun B, Pybus OG, Friedman SR. PMID: 32326127; PMCID: PMC7232463.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    52. Transmission of hepatitis C virus in HIV-positive and PrEP-using MSM in England. J Viral Hepat. 2020 07; 27(7):721-730. Bradshaw D, Vasylyeva TI, Davis C, Pybus OG, Thézé J, Thomson EC, Martinello M, Matthews GV, Burholt R, Gilleece Y, Cooke GS, Page EE, Waters L, Nelson M. PMID: 32115809.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCellsPHPublic Health
    53. Prevalence of Cardiovascular Disease Risk Factors in Childhood Glomerular Diseases. J Am Heart Assoc. 2019 07 16; 8(14):e012143. Ashoor IF, Mansfield SA, O'Shaughnessy MM, Parekh RS, Zee J, Vasylyeva TL, Kogon AJ, Sethna CB, Glenn DA, Chishti AS, Weaver DJ, Helmuth ME, Fernandez HE, Rheault MN, CureGN Consortium. PMID: 31286821; PMCID: PMC6662122.
      View in: PubMed   Mentions:
    54. People with high HIV viral load within risk networks: who are these people and who refers them best? J Infect Dev Ctries. 2019 07; 13(7 Suppl):103S-110S. Korobchuk A, Davtyan H, Denisiuk O, Zachariah R, Nikolopoulos GK, Paraskevis D, Skaathun B, Schneider J, Vasylyeva TI, Williams LD, Smyrnov P, Friedman SR. PMID: 31592313; PMCID: PMC6779172.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCellsPHPublic Health
    55. Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology. J Infect Dis. 2019 06 19; 220(2):233-243. Vasylyeva TI, du Plessis L, Pineda-Peña AC, Kühnert D, Lemey P, Vandamme AM, Gomes P, Camacho RJ, Pybus OG, Abecasis AB, Faria NR. PMID: 30805610; PMCID: PMC6581889.
      View in: PubMed   Mentions:
    56. Social network approaches to locating people recently infected with HIV in Odessa, Ukraine. J Int AIDS Soc. 2019 06; 22(6):e25330. Williams LD, Korobchuk A, Smyrnov P, Sazonova Y, Nikolopoulos GK, Skaathun B, Morgan E, Schneider J, Vasylyeva TI, Duong YT, Chernyavska S, Goncharov V, Kotlik L, Friedman SR. PMID: 31245917; PMCID: PMC6595706.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansPHPublic Health
    57. Developing a Research Mentorship Program: The American Society of Pediatric Nephrology's Experience. Front Pediatr. 2019; 7:155. Vasylyeva TL, Díaz-González de Ferris ME, Hains DS, Ho J, Harshman LA, Reidy KJ, Brady TM, Okamura DM, Samsonov DV, Wenderfer SE, Hartung EA. PMID: 31069203; PMCID: PMC6491803.
      View in: PubMed   Mentions:
    58. The Changing Epidemiological Profile of HIV-1 Subtype B Epidemic in Ukraine. AIDS Res Hum Retroviruses. 2019 02; 35(2):155-163. Vasylyeva TI, Liulchuk M, du Plessis L, Fearnhill E, Zadorozhna V, Babii N, Scherbinska A, Novitsky V, Pybus OG, Faria NR. PMID: 30430838; PMCID: PMC6360399.
      View in: PubMed   Mentions:
    59. An Innovative Study Design to Assess the Community Effect of Interventions to Mitigate HIV Epidemics Using Transmission-Chain Phylodynamics. Am J Epidemiol. 2018 12 01; 187(12):2615-2622. Magiorkinis G, Karamitros T, Vasylyeva TI, Williams LD, Mbisa JL, Hatzakis A, Paraskevis D, Friedman SR. PMID: 30101288; PMCID: PMC6269241.
      View in: PubMed   Mentions:
    60. Association of infections and venous thromboembolism in hospitalized children with nephrotic syndrome. Pediatr Nephrol. 2019 02; 34(2):261-267. Carpenter SL, Goldman J, Sherman AK, Selewski DT, Kallash M, Tran CL, Seamon M, Katsoufis C, Ashoor I, Hernandez J, Supe-Markovina K, D'alessandri-Silva C, DeJesus-Gonzalez N, Vasylyeva TL, Formeck C, Woll C, Gbadegesin R, Geier P, Devarajan P, Smoyer WE, Kerlin BA, Rheault MN. PMID: 30194664; PMCID: PMC6628263.
      View in: PubMed   Mentions:
    61. Clinical Characteristics and Treatment Patterns of Children and Adults With IgA Nephropathy or IgA Vasculitis: Findings From the CureGN Study. Kidney Int Rep. 2018 Nov; 3(6):1373-1384. Selewski DT, Ambruzs JM, Appel GB, Bomback AS, Matar RB, Cai Y, Cattran DC, Chishti AS, D'Agati VD, D'Alessandri-Silva CJ, Gbadegesin RA, Hogan JJ, Iragorri S, Jennette JC, Julian BA, Khalid M, Lafayette RA, Liapis H, Lugani F, Mansfield SA, Mason S, Nachman PH, Nast CC, Nester CM, Noone DG, Novak J, O'Shaughnessy MM, Reich HN, Rheault MN, Rizk DV, Saha MK, Sanghani NS, Sperati CJ, Sreedharan R, Srivastava T, Swiatecka-Urban A, Twombley K, Vasylyeva TL, Weaver DJ, Yin H, Zee J, Falk RJ, Gharavi AG, Gillespie BW, Gipson DS, Greenbaum LA, Holzman LB, Kretzler M, Robinson BM, Smoyer WE, Flessner M, Guay-Woodford LM, Kiryluk K, CureGN Consortium. PMID: 30450464; PMCID: PMC6224619.
      View in: PubMed   Mentions: 39  
    62. Network Research Experiences in New York and Eastern Europe: Lessons for the Southern US in Understanding HIV Transmission Dynamics. Curr HIV/AIDS Rep. 2018 06; 15(3):283-292. Friedman SR, Williams L, Young AM, Teubl J, Paraskevis D, Kostaki E, Latkin C, German D, Mateu-Gelabert P, Guarino H, Vasylyeva TI, Skaathun B, Schneider J, Korobchuk A, Smyrnov P, Nikolopoulos G. PMID: 29905915; PMCID: PMC6010197.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    63. Molecular epidemiology reveals the role of war in the spread of HIV in Ukraine. Proc Natl Acad Sci U S A. 2018 01 30; 115(5):1051-1056. Vasylyeva TI, Liulchuk M, Friedman SR, Sazonova I, Faria NR, Katzourakis A, Babii N, Scherbinska A, Thézé J, Pybus OG, Smyrnov P, Mbisa JL, Paraskevis D, Hatzakis A, Magiorkinis G. PMID: 29339468; PMCID: PMC5798316.
      View in: PubMed   Mentions:
    64. Risk network approaches to locating undiagnosed HIV cases in Odessa, Ukraine. J Int AIDS Soc. 2018 01; 21(1). Smyrnov P, Williams LD, Korobchuk A, Sazonova Y, Nikolopoulos GK, Skaathun B, Morgan E, Schneider J, Vasylyeva TI, Friedman SR. PMID: 29356365; PMCID: PMC5810318.
      View in: PubMed   Mentions: 29     Fields:    Translation:Humans
    65. Engagement in sex work does not increase HIV risk for women who inject drugs in Ukraine. J Public Health (Oxf). 2017 09 01; 39(3):e103-e110. Vasylyeva TI, Friedman SR, Gensburg L, Smyrnov P. PMID: 27451415; PMCID: PMC5896584.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    66. A network intervention that locates and intervenes with recently HIV-infected persons: The Transmission Reduction Intervention Project (TRIP). Sci Rep. 2016 12 05; 6:38100. Nikolopoulos GK, Pavlitina E, Muth SQ, Schneider J, Psichogiou M, Williams LD, Paraskevis D, Sypsa V, Magiorkinis G, Smyrnov P, Korobchuk A, Vasylyeva TI, Skaathun B, Malliori M, Kafetzopoulos E, Hatzakis A, Friedman SR. PMID: 27917890; PMCID: PMC5137009.
      View in: PubMed   Mentions: 53     Fields:    Translation:HumansPHPublic Health
    67. Reducing HIV infection in people who inject drugs is impossible without targeting recently-infected subjects. AIDS. 2016 11 28; 30(18):2885-2890. Vasylyeva TI, Friedman SR, Lourenco J, Gupta S, Hatzakis A, Pybus OG, Katzourakis A, Smyrnov P, Karamitros T, Paraskevis D, Magiorkinis G. PMID: 27824626; PMCID: PMC5106086.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCellsPHPublic Health
    68. Integrating molecular epidemiology and social network analysis to study infectious diseases: Towards a socio-molecular era for public health. Infect Genet Evol. 2016 12; 46:248-255. Vasylyeva TI, Friedman SR, Paraskevis D, Magiorkinis G. PMID: 27262354; PMCID: PMC5135626.
      View in: PubMed   Mentions:
    69. The global spread of HIV-1 subtype B epidemic. Infect Genet Evol. 2016 12; 46:169-179. Magiorkinis G, Angelis K, Mamais I, Katzourakis A, Hatzakis A, Albert J, Lawyer G, Hamouda O, Struck D, Vercauteren J, Wensing A, Alexiev I, Åsjö B, Balotta C, Gomes P, Camacho RJ, Coughlan S, Griskevicius A, Grossman Z, Horban A, Kostrikis LG, Lepej SJ, Liitsola K, Linka M, Nielsen C, Otelea D, Paredes R, Poljak M, Puchhammer-Stöckl E, Schmit JC, Sönnerborg A, Staneková D, Stanojevic M, Stylianou DC, Boucher CAB, SPREAD program, Nikolopoulos G, Vasylyeva T, Friedman SR, van de Vijver D, Angarano G, Chaix ML, de Luca A, Korn K, Loveday C, Soriano V, Yerly S, Zazzi M, Vandamme AM, Paraskevis D. PMID: 27262355; PMCID: PMC5157885.
      View in: PubMed   Mentions:
    70. Prevention of early HIV transmissions might be more important in emerging or generalizing epidemics. Proc Natl Acad Sci U S A. 2015 Mar 31; 112(13):E1515. Vasylyeva TI, Friedman SR, Magiorkinis G. PMID: 25737538; PMCID: PMC4386368.
      View in: PubMed   Mentions:
    71. Socially-integrated transdisciplinary HIV prevention. AIDS Behav. 2014 Oct; 18(10):1821-34. Friedman SR, Downing MJ, Smyrnov P, Nikolopoulos G, Schneider JA, Livak B, Magiorkinis G, Slobodianyk L, Vasylyeva TI, Paraskevis D, Psichogiou M, Sypsa V, Malliori MM, Hatzakis A. PMID: 24165983; PMCID: PMC4004719.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansPHPublic Health
    72. Theory, measurement and hard times: some issues for HIV/AIDS research. AIDS Behav. 2013 Jul; 17(6):1915-25. Friedman SR, Sandoval M, Mateu-Gelabert P, Rossi D, Gwadz M, Dombrowski K, Smyrnov P, Vasylyeva T, Pouget ER, Perlman D. PMID: 23564029; PMCID: PMC3674169.
      View in: PubMed   Mentions:
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