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Tetyana Vasylyeva

Title(s)Assistant Professor, Pop Hlth and Disease Prevention
SchoolUC Irvine Joe C. Wen School of Population & Public Health
Address856 Health Sciences Quad
University of California, Irvine
Irvine CA 92697-3957
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Phylogeographic and genetic network assessment of COVID-19 mitigation protocols on SARS-CoV-2 transmission in university campus residences. EBioMedicine. 2025 Jun; 116:105729. Wertheim JO, Vasylyeva TI, Wood RJ, Cantrell K, Contreras SP, Feldheim A, Goyal R, Havens JL, Knight R, Laurent LC, Moshiri N, Neuhard R, Sathe S, Satterlund A, Scioscia A, Song AY, SEARCH Alliance, Schooley RT, Anderson CM, Martin NK. PMID: 40347833; PMCID: PMC12139431.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    2. The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2. Cell. 2025 Jun 12; 188(12):3167-3183.e18. Pekar JE, Lytras S, Ghafari M, Magee AF, Parker E, Wang Y, Ji X, Havens JL, Katzourakis A, Vasylyeva TI, Suchard MA, Hughes AC, Hughes J, Rambaut A, Robertson DL, Dellicour S, Worobey M, Wertheim JO, Lemey P. PMID: 40339581; PMCID: PMC12230244.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    3. Transmission dynamics of the 2022 mpox epidemic in New York City. Nat Med. 2025 May; 31(5):1464-1473. Pekar JE, Wang Y, Wang JC, Shao Y, Taki F, Forgione LA, Amin H, Clabby T, Johnson K, Torian LV, Braunstein SL, Pathela P, Omoregie E, Hughes S, Suchard MA, Vasylyeva TI, Lemey P, Wertheim JO. PMID: 40133528; PMCID: PMC12092259.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCellsPHPublic Health
    4. HIV and hepatitis C Virus in internally displaced people with and without injection drug use experience in the region of Shida Kartli, Georgia. BMC Res Notes. 2024 Oct 20; 17(1):315. Trovato A, Gogia M, Aslanikashvili A, Kasrashvili T, Kovalenko G, Yakovleva A, Skaathun B, Vasylyeva TI. PMID: 39428495; PMCID: PMC11492736.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    5. Genomic epidemiology reveals 2022 mpox epidemic in New York City governed by heavy-tailed sexual contact networks. medRxiv. 2024 Aug 01. Pekar JE, Wang Y, Wang JC, Shao Y, Taki F, Forgione LA, Amin H, Clabby T, Johnson K, Torian LV, Braunstein SL, Pathela P, Omoregie E, Hughes S, Suchard MA, Vasylyeva TI, Lemey P, Wertheim JO. PMID: 39132479; PMCID: PMC11312668.
      View in: PubMed   Mentions:
    6. The role of socio-economic disparities in the relative success and persistence of SARS-CoV-2 variants in New York City in early 2021. PLoS Pathog. 2024 Jun; 20(6):e1012288. Vasylyeva TI, Havens JL, Wang JC, Luoma E, Hassler GW, Amin H, Di Lonardo S, Taki F, Omoregie E, Hughes S, Wertheim JO. PMID: 38900824; PMCID: PMC11218943.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    7. Integrated Genomic and Social Network Analyses of SARS-CoV-2 Transmission in the Healthcare Setting. Clin Infect Dis. 2024 05 15; 78(5):1204-1213. Keehner J, Abeles SR, Longhurst CA, Horton LE, Myers FE, Riggs-Rodriguez L, Ahmad M, Baxter S, Boussina A, Cantrell K, Cardenas P, De Hoff P, El-Kareh R, Holland J, Ikeda D, Kurashige K, Laurent LC, SEARCH Alliance, Lucas A, Pride D, Sathe S, Tran AR, Vasylyeva TI, Yeo G, Knight R, Wertheim JO, Torriani FJ. PMID: 38227643; PMCID: PMC11093679.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    8. HIV-1 transmission dynamics among people who inject drugs on the US/Mexico border during the COVID-19 pandemic: a prosepective cohort study. Lancet Reg Health Am. 2024 May; 33:100751. Skaathun B, Strathdee SA, Shrader CH, Nacht CL, Borquez A, Artamonova I, Harvey-Vera A, Vera CF, Rangel G, Ignacio C, Woodworth B, Chaillon A, Vasylyeva TI. PMID: 38711788; PMCID: PMC11070707.
      View in: PubMed   Mentions: 5  
    9. Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models. PLoS Comput Biol. 2024 Mar; 20(3):e1011640. Shao Y, Magee AF, Vasylyeva TI, Suchard MA. PMID: 38551979; PMCID: PMC11006205.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCellsPHPublic Health
    10. The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2. bioRxiv. 2023 Jul 12. Pekar JE, Lytras S, Ghafari M, Magee AF, Parker E, Havens JL, Katzourakis A, Vasylyeva TI, Suchard MA, Hughes AC, Hughes J, Robertson DL, Dellicour S, Worobey M, Wertheim JO, Lemey P. PMID: 37502985; PMCID: PMC10369958.
      View in: PubMed   Mentions: 2  
    11. Hepatitis C Virus in people with experience of injection drug use following their displacement to Southern Ukraine before 2020. BMC Infect Dis. 2023 Jul 03; 23(1):446. Yakovleva A, Kovalenko G, Redlinger M, Smyrnov P, Tymets O, Korobchuk A, Kotlyk L, Kolodiazieva A, Podolina A, Cherniavska S, Antonenko P, Strathdee SA, Friedman SR, Goodfellow I, Wertheim JO, Bortz E, Meredith L, Vasylyeva TI. PMID: 37400776; PMCID: PMC10316605.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    12. Author Correction: Tracking SARS-COV-2 variants using Nanopore sequencing in Ukraine in 2021. Sci Rep. 2023 Feb 13; 13(1):2555. Yakovleva A, Kovalenko G, Redlinger M, Liulchuk MG, Bortz E, Zadorozhna VI, Scherbinska AM, Wertheim JO, Goodfellow I, Meredith L, Vasylyeva TI. PMID: 36781923; PMCID: PMC9924184.
      View in: PubMed   Mentions:    Fields:    
    13. Phylodynamics and migration data help describe HIV transmission dynamics in internally displaced people who inject drugs in Ukraine. PNAS Nexus. 2023 Mar; 2(3):pgad008. Kovalenko G, Yakovleva A, Smyrnov P, Redlinger M, Tymets O, Korobchuk A, Kolodiazieva A, Podolina A, Cherniavska S, Skaathun B, Smith LR, Strathdee SA, Wertheim JO, Friedman SR, Bortz E, Goodfellow I, Meredith L, Vasylyeva TI. PMID: 36896134; PMCID: PMC9991454.
      View in: PubMed   Mentions: 5  
    14. Introduction and Establishment of SARS-CoV-2 Gamma Variant in New York City in Early 2021. J Infect Dis. 2022 12 13; 226(12):2142-2149. Vasylyeva TI, Fang CE, Su M, Havens JL, Parker E, Wang JC, Zeller M, Yakovleva A, Hassler GW, Chowdhury MA, Andersen KG, Hughes S, Wertheim JO. PMID: 35771664; PMCID: PMC9278250.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    15. Left behind on the path to 90-90-90: understanding and responding to HIV among displaced people. J Int AIDS Soc. 2022 11; 25(11):e26031. Vasylyeva TI, Horyniak D, Bojorquez I, Pham MD. PMID: 36352546; PMCID: PMC9646984.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    16. Tracking SARS-COV-2 variants using Nanopore sequencing in Ukraine in 2021. Sci Rep. 2022 09 21; 12(1):15749. Yakovleva A, Kovalenko G, Redlinger M, Liulchuk MG, Bortz E, Zadorozhna VI, Scherbinska AM, Wertheim JO, Goodfellow I, Meredith L, Vasylyeva TI. PMID: 36131001; PMCID: PMC9491264.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    17. Network-level HIV risk norms are associated with individual-level HIV risk and harm reduction behaviors among people who inject drugs: a latent profile analysis. AIDS Behav. 2023 Feb; 27(2):484-495. Shrader CH, Borquez A, Vasylyeva TI, Chaillon A, Artamanova I, Harvey-Vera A, Vera CF, Rangel G, Strathdee SA, Skaathun B. PMID: 35939177; PMCID: PMC9358371.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    18. The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2. Science. 2022 08 26; 377(6609):960-966. Pekar JE, Magee A, Parker E, Moshiri N, Izhikevich K, Havens JL, Gangavarapu K, Malpica Serrano LM, Crits-Christoph A, Matteson NL, Zeller M, Levy JI, Wang JC, Hughes S, Lee J, Park H, Park MS, Ching Zi Yan K, Lin RTP, Mat Isa MN, Noor YM, Vasylyeva TI, Garry RF, Holmes EC, Rambaut A, Suchard MA, Andersen KG, Worobey M, Wertheim JO. PMID: 35881005; PMCID: PMC9348752.
      View in: PubMed   Mentions: 102     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    19. Detection of SARS-CoV-2 intra-host recombination during superinfection with Alpha and Epsilon variants in New York City. Nat Commun. 2022 06 25; 13(1):3645. Wertheim JO, Wang JC, Leelawong M, Martin DP, Havens JL, Chowdhury MA, Pekar JE, Amin H, Arroyo A, Awandare GA, Chow HY, Gonzalez E, Luoma E, Morang'a CM, Nekrutenko A, Shank SD, Silver S, Quashie PK, Rakeman JL, Ruiz V, Torian LV, Vasylyeva TI, Kosakovsky Pond SL, Hughes S. PMID: 35752633; PMCID: PMC9233664.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansCells
    20. Unified European support framework to sustain the HIV cascade of care for people living with HIV including in displaced populations of war-struck Ukraine. Lancet HIV. 2022 06; 9(6):e438-e448. Vasylyev M, Skrzat-Klapaczynska A, Bernardino JI, Sandulescu O, Gilles C, Libois A, Curran A, Spinner CD, Rowley D, Bickel M, Aichelburg MC, Nozza S, Wensing A, Barber TJ, Waters L, Jordans C, Bramer W, Lakatos B, Tovba L, Koval T, Kyrychenko T, Dumchev K, Buhiichyk V, Smyrnov P, Antonyak S, Antoniak S, Vasylyeva TI, Mazhnaya A, Kowalska J, Bhagani S, Rokx C, European AIDS Clinical Society (EACS) Young Investigators (YING). PMID: 35576942.
      View in: PubMed   Mentions: 30     Fields:    Translation:Humans
    21. Unlocking capacities of genomics for the COVID-19 response and future pandemics. Nat Methods. 2022 04; 19(4):374-380. Knyazev S, Chhugani K, Sarwal V, Ayyala R, Singh H, Karthikeyan S, Deshpande D, Baykal PI, Comarova Z, Lu A, Porozov Y, Vasylyeva TI, Wertheim JO, Tierney BT, Chiu CY, Sun R, Wu A, Abedalthagafi MS, Pak VM, Nagaraj SH, Smith AL, Skums P, Pasaniuc B, Komissarov A, Mason CE, Bortz E, Lemey P, Kondrashov F, Beerenwinkel N, Lam TT, Wu NC, Zelikovsky A, Knight R, Crandall KA, Mangul S. PMID: 35396471; PMCID: PMC9467803.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCellsPHPublic Health
    22. Tracking SARS-COV-2 Variants Using Nanopore Sequencing in Ukraine in Summer 2021. Res Sq. 2021 Nov 30. Yakovleva A, Kovalenko G, Redlinger M, Liulchuk MG, Bortz E, Zadorozhna VI, Scherbinska AM, Wertheim JO, Goodfellow I, Meredith L, Vasylyeva TI. PMID: 34873595; PMCID: PMC8647652.
      View in: PubMed   Mentions:
    23. Detection and characterization of the SARS-CoV-2 lineage B.1.526 in New York. Nat Commun. 2021 08 09; 12(1):4886. West AP, Wertheim JO, Wang JC, Vasylyeva TI, Havens JL, Chowdhury MA, Gonzalez E, Fang CE, Di Lonardo SS, Hughes S, Rakeman JL, Lee HH, Barnes CO, Gnanapragasam PNP, Yang Z, Gaebler C, Caskey M, Nussenzweig MC, Keeffe JR, Bjorkman PJ. PMID: 34373458; PMCID: PMC8352861.
      View in: PubMed   Mentions: 64     Fields:    Translation:HumansCells
    24. Detection and characterization of the SARS-CoV-2 lineage B.1.526 in New York. bioRxiv. 2021 Apr 22. West AP, Wertheim JO, Wang JC, Vasylyeva TI, Havens JL, Chowdhury MA, Gonzalez E, Fang CE, Di Lonardo SS, Hughes S, Rakeman JL, Lee HH, Barnes CO, Gnanapragasam PNP, Yang Z, Gaebler C, Caskey M, Nussenzweig MC, Keeffe JR, Bjorkman PJ. PMID: 33907745; PMCID: PMC8077570.
      View in: PubMed   Mentions:
    25. Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK. Science. 2021 02 12; 371(6530):708-712. du Plessis L, McCrone JT, Zarebski AE, Hill V, Ruis C, Gutierrez B, Raghwani J, Ashworth J, Colquhoun R, Connor TR, Faria NR, Jackson B, Loman NJ, O'Toole Á, Nicholls SM, Parag KV, Scher E, Vasylyeva TI, Volz EM, Watts A, Bogoch II, Khan K, COVID-19 Genomics UK (COG-UK) Consortium, Aanensen DM, Kraemer MUG, Rambaut A, Pybus OG. PMID: 33419936; PMCID: PMC7877493.
      View in: PubMed   Mentions: 252     Fields:    Translation:HumansCellsPHPublic Health
    26. Challenges posed by COVID-19 to people who inject drugs and lessons from other outbreaks. J Int AIDS Soc. 2020 07; 23(7):e25583. Vasylyeva TI, Smyrnov P, Strathdee S, Friedman SR. PMID: 32697423; PMCID: PMC7375066.
      View in: PubMed   Mentions: 92     Fields:    Translation:HumansCellsPHPublic Health
    27. Phylodynamics Helps to Evaluate the Impact of an HIV Prevention Intervention. Viruses. 2020 04 20; 12(4). Vasylyeva TI, Zarebski A, Smyrnov P, Williams LD, Korobchuk A, Liulchuk M, Zadorozhna V, Nikolopoulos G, Paraskevis D, Schneider J, Skaathun B, Pybus OG, Friedman SR. PMID: 32326127; PMCID: PMC7232463.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCells
    28. Transmission of hepatitis C virus in HIV-positive and PrEP-using MSM in England. J Viral Hepat. 2020 07; 27(7):721-730. Bradshaw D, Vasylyeva TI, Davis C, Pybus OG, Thézé J, Thomson EC, Martinello M, Matthews GV, Burholt R, Gilleece Y, Cooke GS, Page EE, Waters L, Nelson M. PMID: 32115809.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCellsPHPublic Health
    29. People with high HIV viral load within risk networks: who are these people and who refers them best? J Infect Dev Ctries. 2019 07; 13(7 Suppl):103S-110S. Korobchuk A, Davtyan H, Denisiuk O, Zachariah R, Nikolopoulos GK, Paraskevis D, Skaathun B, Schneider J, Vasylyeva TI, Williams LD, Smyrnov P, Friedman SR. PMID: 31592313; PMCID: PMC6779172.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCellsPHPublic Health
    30. Social network approaches to locating people recently infected with HIV in Odessa, Ukraine. J Int AIDS Soc. 2019 06; 22(6):e25330. Williams LD, Korobchuk A, Smyrnov P, Sazonova Y, Nikolopoulos GK, Skaathun B, Morgan E, Schneider J, Vasylyeva TI, Duong YT, Chernyavska S, Goncharov V, Kotlik L, Friedman SR. PMID: 31245917; PMCID: PMC6595706.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansPHPublic Health
    31. Network Research Experiences in New York and Eastern Europe: Lessons for the Southern US in Understanding HIV Transmission Dynamics. Curr HIV/AIDS Rep. 2018 06; 15(3):283-292. Friedman SR, Williams L, Young AM, Teubl J, Paraskevis D, Kostaki E, Latkin C, German D, Mateu-Gelabert P, Guarino H, Vasylyeva TI, Skaathun B, Schneider J, Korobchuk A, Smyrnov P, Nikolopoulos G. PMID: 29905915; PMCID: PMC6010197.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    32. Risk network approaches to locating undiagnosed HIV cases in Odessa, Ukraine. J Int AIDS Soc. 2018 01; 21(1). Smyrnov P, Williams LD, Korobchuk A, Sazonova Y, Nikolopoulos GK, Skaathun B, Morgan E, Schneider J, Vasylyeva TI, Friedman SR. PMID: 29356365; PMCID: PMC5810318.
      View in: PubMed   Mentions: 29     Fields:    Translation:Humans
    33. Engagement in sex work does not increase HIV risk for women who inject drugs in Ukraine. J Public Health (Oxf). 2017 09 01; 39(3):e103-e110. Vasylyeva TI, Friedman SR, Gensburg L, Smyrnov P. PMID: 27451415; PMCID: PMC5896584.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    34. A network intervention that locates and intervenes with recently HIV-infected persons: The Transmission Reduction Intervention Project (TRIP). Sci Rep. 2016 12 05; 6:38100. Nikolopoulos GK, Pavlitina E, Muth SQ, Schneider J, Psichogiou M, Williams LD, Paraskevis D, Sypsa V, Magiorkinis G, Smyrnov P, Korobchuk A, Vasylyeva TI, Skaathun B, Malliori M, Kafetzopoulos E, Hatzakis A, Friedman SR. PMID: 27917890; PMCID: PMC5137009.
      View in: PubMed   Mentions: 52     Fields:    Translation:HumansPHPublic Health
    35. Reducing HIV infection in people who inject drugs is impossible without targeting recently-infected subjects. AIDS. 2016 11 28; 30(18):2885-2890. Vasylyeva TI, Friedman SR, Lourenco J, Gupta S, Hatzakis A, Pybus OG, Katzourakis A, Smyrnov P, Karamitros T, Paraskevis D, Magiorkinis G. PMID: 27824626; PMCID: PMC5106086.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCellsPHPublic Health
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