Katherine Xue

Title(s)Assistant Professor, Molecular Biology & Biochemistry
SchoolDunlop School of Biological Sciences
AddressZot 3900
Irvine CA 92697
vCardDownload vCard

    Collapse Bibliographic 
    Collapse publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. CUPID-seq enables highly multiplexed amplicon sequencing via combinatorial in-line dual indexing. bioRxiv. 2026 May 21. Fu B, Porter RL, Shi H, Ea AC, Espeleta AM, Ambat A, Relman DA, Huang KC, Xue KS. PMID: 42239137; PMCID: PMC13228431.
      View in: PubMed   Mentions:
    2. Community coalescence reveals strong selection and coexistence within species in complex microbial communities. bioRxiv. 2025 Nov 07. Walton SJ, Xu Q, Sharma R, Gellert HR, Yeh CF, Cremer J, Xue KS, Petrov DA, Good BH. PMID: 41278818; PMCID: PMC12637602.
      View in: PubMed   Mentions:
    3. Intestinal catabolism of dietary fructose promotes obesity and insulin resistance via ileal lacteal remodeling. bioRxiv. 2025 Aug 22. Lopez ML, Kang T, Espeleta A, Rubtsova VI, Baek J, Songcuan J, Moyer EM, Kim J, Song WS, Jung S, D'Sa N, Anica A, Tran E, Chun Y, Choi W, Jang KH, Kelly ME, Tamburini IJ, Alam YH, Le J, Ramirez CB, Kataru RP, Hong SP, Nicholas DA, Xue KS, Lee G, Bae H, Jang C. PMID: 40894608; PMCID: PMC12393376.
      View in: PubMed   Mentions:
    4. Effects of parental care on skin microbial community composition in poison frogs. bioRxiv. 2025 May 21. Fischer MT, Xue KS, Costello EK, Dvorak M, Raboisson G, Robaczewska A, Caty SN, Relman DA, O'Connell LA. PMID: 39314287; PMCID: PMC11419107.
      View in: PubMed   Mentions:
    5. Competition for shared resources increases dependence on initial population size during coalescence of gut microbial communities. Proc Natl Acad Sci U S A. 2025 Mar 18; 122(11):e2322440122. Goldman DA, Xue KS, Parrott AB, Lopez JA, Vila JCC, Jeeda RR, Franzese LR, Porter RL, Gray IJ, DeFelice BC, Petrov DA, Good BH, Relman DA, Huang KC. PMID: 40063808; PMCID: PMC11929384.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    6. Quantifying compositional variability in microbial communities with FAVA. bioRxiv. 2024 Jul 05. Morrison ML, Xue KS, Rosenberg NA. PMID: 39005283; PMCID: PMC11244974.
      View in: PubMed   Mentions:
    7. Competition for shared resources increases dependence on initial population size during coalescence of gut microbial communities. bioRxiv. 2023 Dec 11. Goldman DA, Xue KS, Parrott AB, Jeeda RR, Franzese LR, Lopez JG, Vila JCC, Petrov DA, Good BH, Relman DA, Huang KC. PMID: 38076867; PMCID: PMC10705444.
      View in: PubMed   Mentions:
    8. Prolonged delays in human microbiota transmission after a controlled antibiotic perturbation. bioRxiv. 2023 Oct 30. Xue KS, Walton SJ, Goldman DA, Morrison ML, Verster AJ, Parrott AB, Yu FB, Neff NF, Rosenberg NA, Ross BD, Petrov DA, Huang KC, Good BH, Relman DA. PMID: 37808827; PMCID: PMC10557656.
      View in: PubMed   Mentions:
    9. Construction and characterization of a genome-scale ordered mutant collection of Bacteroides thetaiotaomicron. BMC Biol. 2022 12 17; 20(1):285. Arjes HA, Sun J, Liu H, Nguyen TH, Culver RN, Celis AI, Walton SJ, Vasquez KS, Yu FB, Xue KS, Newton D, Zermeno R, Weglarz M, Deutschbauer A, Huang KC, Shiver AL. PMID: 36527020; PMCID: PMC9758874.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    10. Linking influenza virus evolution within and between human hosts. Virus Evol. 2020 Jan; 6(1):veaa010. Xue KS, Bloom JD. PMID: 32082616; PMCID: PMC7025719.
      View in: PubMed   Mentions: 45  
    11. Reconciling disparate estimates of viral genetic diversity during human influenza infections. Nat Genet. 2019 09; 51(9):1298-1301. Xue KS, Bloom JD. PMID: 30804564; PMCID: PMC6708745.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansCells
    12. Sera from Individuals with Narrowly Focused Influenza Virus Antibodies Rapidly Select Viral Escape Mutations In Ovo. J Virol. 2018 10 01; 92(19). Davis AKF, McCormick K, Gumina ME, Petrie JG, Martin ET, Xue KS, Bloom JD, Monto AS, Bushman FD, Hensley SE. PMID: 30045982; PMCID: PMC6146816.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    13. Within-Host Evolution of Human Influenza Virus. Trends Microbiol. 2018 09; 26(9):781-793. Xue KS, Moncla LH, Bedford T, Bloom JD. PMID: 29534854; PMCID: PMC6097882.
      View in: PubMed   Mentions: 70     Fields:    Translation:HumansCells
    14. Cooperating H3N2 Influenza Virus Variants Are Not Detectable in Primary Clinical Samples. mSphere. 2018 Jan-Feb; 3(1). Xue KS, Greninger AL, Pérez-Osorio A, Bloom JD. PMID: 29299533; PMCID: PMC5750391.
      View in: PubMed   Mentions: 16     Fields:    
    15. Parallel evolution of influenza across multiple spatiotemporal scales. Elife. 2017 06 27; 6. Xue KS, Stevens-Ayers T, Campbell AP, Englund JA, Pergam SA, Boeckh M, Bloom JD. PMID: 28653624; PMCID: PMC5487208.
      View in: PubMed   Mentions: 79     Fields:    Translation:HumansCells
    16. Cooperation between distinct viral variants promotes growth of H3N2 influenza in cell culture. Elife. 2016 Mar 15; 5:e13974. Xue KS, Hooper KA, Ollodart AR, Dingens AS, Bloom JD. PMID: 26978794; PMCID: PMC4805539.
      View in: PubMed   Mentions: 48     Fields:    Translation:AnimalsCells
    Katherine's Networks
    Concepts (59)
    Derived automatically from this person's publications.
    Explore
    _
    Co-Authors (3)
    People in Profiles who have published with this person.
    Explore
    _
    Similar People (60)
    People who share similar concepts with this person.
    Explore
    _
    Same Department
    Search Department
    _

    UCI Profiles is managed by the UCSF Clinical and Translational Science Institute (CTSI), part of the Clinical and Translational Science Award program funded by the National Center for Advancing Translational Sciences (Grant Number UL1 TR000004) at the National Institutes of Health (NIH).
    This site is running Profiles RNS version UCSF-v3.1.0-40-gb10dcd06 on PROFILES-PWEB04. We use cookies to operate our website. We also use cookies to analyze our site’s performance and improve your experience on our site. For more information about how we use cookies, please see our Website Terms of Use.

    Copyright © The Regents of the University of California