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David Len Gibbs

Title(s)Health Sciences Professor, Surgery
SchoolSchool of Medicine
Address1001 Health Sciences Road
Irvine CA 92697-3950
Phone(714) 364-4050
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Pediatric Ocular Trauma: Not Just a Pediatric Trauma Center Problem. Pediatr Emerg Care. 2025 Sep 17. Flyer Z, Schomberg J, Giron A, Dinh P, Suh D, Guner YS, Shatz D, Gibbs D, Goodman LF. PMID: 40958472.
      View in: PubMed   Mentions:    Fields:    
    2. A fibroblast-centric network drives cold fibrosis in the tumor microenvironment of lung squamous cell carcinoma. bioRxiv. 2025 Aug 25. Miyara S, Frenkel S, Mayo A, Gascard P, Strasser M, Gibbs D, Weizman E, Shalom IB, Stein Y, Pan D, Caruso JA, Sangwan V, Bertos N, Berube J, Camilleri-Broet S, Oikonomopoulos S, Djambazian H, Umansky KB, Elkahal J, Mayer S, Fiset PO, Ragoussis J, Adler M, Tzahor E, Huang S, Ferri L, Tlsty TD, Scherz-Shouval R, Alon U. PMID: 40909739; PMCID: PMC12407771.
      View in: PubMed   Mentions:
    3. Concerted changes in Epithelium and Stroma: a multi-scale, multi-omics analysis of progression from Barrett's Esophagus to adenocarcinoma. Dev Cell. 2025 Oct 20; 60(20):2807-2824.e7. Strasser MK, Gibbs DL, Gascard P, Bons J, Hickey JW, Pan D, Caruso JA, Wang X, Chen-Tanyolac C, Bai R, Schürch CM, Tan Y, Black S, Chu P, Ozkan A, Basisty N, Sangwan V, Rose J, Shah S, Burton JB, Camilleri-Broet S, Fiset PO, Bertos N, Berube J, Djambazian H, Li R, Oikonomopoulos S, Elliott DRF, Vernovsky S, Shimshoni E, Collyar D, Russell A, Ragoussis J, Stachler MD, Goldenring JR, McDonald SAC, Ingber DE, Schilling B, Nolan GP, Tlsty TD, Huang S, Ferri LE. PMID: 40695287; PMCID: PMC12327839.
      View in: PubMed   Mentions: 1     Fields:    
    4. A Fibroblast State Choreographs an Epithelial YAP-dependent Regenerative Program Essential to (Pre)malignancy via ECM-mediated Mechanotransduction. bioRxiv. 2025 Jul 11. Pan D, Gascard P, Caruso JA, Chen-Tanyolac C, Sangwan V, Bertos N, Camilleri-Broet S, Berube J, Oikonomopoulos S, Strasser MK, Gibbs DL, Bons J, Burton JB, Rose JP, Shah S, Bai R, Lee S, Fels-Elliott DR, Miyara S, Alon U, Urisman A, Ragoussis I, Huang S, Schilling B, Ferri LE, Tlsty TD. PMID: 40672206; PMCID: PMC12265695.
      View in: PubMed   Mentions:
    5. Sharing data from the Human Tumor Atlas Network through standards, infrastructure and community engagement. Nat Methods. 2025 Apr; 22(4):664-671. de Bruijn I, Nikolov M, Lau C, Clayton A, Gibbs DL, Mitraka E, Pozhidayeva D, Lash A, Sumer SO, Altreuter J, Anton K, DeFelice M, Li X, Lisman A, Longabaugh WJR, Muhlich J, Santagata S, Nandakumar S, Sorger PK, Suver C, Doan X, Guinney J, Schultz N, Taylor AJ, Thorsson V, Cerami E, Eddy JA. PMID: 40164800; PMCID: PMC12125965.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    6. Robust Cluster Prediction Across Data Types Validates Association of Sex and Therapy Response in GBM. Cancers (Basel). 2025 Jan 28; 17(3). Gibbs DL, Cioffi G, Aguilar B, Waite KA, Pan E, Mandel J, Umemura Y, Luo J, Rubin JB, Pot D, Barnholtz-Sloan J. PMID: 39941811; PMCID: PMC11815886.
      View in: PubMed   Mentions: 1  
    7. A prospective evaluation of cellular bone matrix for posterolateral lumbar fusion. Clin Neurol Neurosurg. 2025 Feb; 249:108683. Dhaliwal J, Weinberg JH, Ritchey N, Akhter A, Gibbs D, Gruber M, Ghaith AK, Khalsa SS, Xu D, Grossbach A, Viljoen S. PMID: 39667224.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    8. Basic is Better? An Assessment of National Outcomes in Prehospital Airway Management in Critical Acuity Pediatric Trauma. J Emerg Med. 2025 Mar; 70:68-79. Goodman LF, Martino AM, Schomberg J, Awan S, Yu P, Heyming T, Nahmias J, Guner YS, Gibbs D. PMID: 39915150.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    9. Pediatric Burns - Who Requires Follow-up? A Study of Urban Pediatric Emergency Department Patients. West J Emerg Med. 2024 Jul; 25(4):634-644. Heyming T, Dunkelman A, Gibbs D, Knudsen-Robbins C, Schomberg J, Takallou A, Lara B, Valdez B, Joe V. PMID: 39028250; PMCID: PMC11254158.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    10. Sharing Data from the Human Tumor Atlas Network through Standards, Infrastructure, and Community Engagement. bioRxiv. 2024 Jun 30. de Bruijn I, Nikolov M, Lau C, Clayton A, Gibbs DL, Mitraka E, Pozhidayeva D, Lash A, Sumer SO, Altreuter J, Anton K, DeFelice M, Li X, Lisman A, R Longabaugh WJ, Muhlich J, Santagata S, Nandakumar S, Sorger PK, Suver C, Schultz N, Taylor AJ, Thorsson V, Cerami E, Eddy JA. PMID: 38979389; PMCID: PMC11230241.
      View in: PubMed   Mentions:
    11. Blood Vitamin C Levels of Patients Receiving Immunotherapy and Relationship to Monocyte Subtype and Epigenetic Modification. Epigenomes. 2024 Apr 30; 8(2). Topham B, de Vries M, Nonis M, van Berkel R, Pullar JM, Magon NJ, Vissers MCM, Currie MJ, Robinson BA, Gibbs D, Ang A, Dachs GU. PMID: 38804366; PMCID: PMC11130941.
      View in: PubMed   Mentions:
    12. Amphiregulin Switches Progenitor Cell Fate for Lineage Commitment During Gastric Mucosal Regeneration. Gastroenterology. 2024 Aug; 167(3):469-484. Lee SH, Won Y, Gibbs D, Caldwell B, Goldstein A, Choi E, Goldenring JR. PMID: 38492892; PMCID: PMC11260537.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    13. National Cancer Institute Imaging Data Commons: Toward Transparency, Reproducibility, and Scalability in Imaging Artificial Intelligence. Radiographics. 2023 12; 43(12):e230180. Fedorov A, Longabaugh WJR, Pot D, Clunie DA, Pieper SD, Gibbs DL, Bridge C, Herrmann MD, Homeyer A, Lewis R, Aerts HJWL, Krishnaswamy D, Thiriveedhi VK, Ciausu C, Schacherer DP, Bontempi D, Pihl T, Wagner U, Farahani K, Kim E, Kikinis R. PMID: 37999984; PMCID: PMC10716669.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    14. Single-cell gene set scoring with nearest neighbor graph smoothed data (gssnng). Bioinform Adv. 2023; 3(1):vbad150. Gibbs DL, Strasser MK, Huang S. PMID: 37886712; PMCID: PMC10599965.
      View in: PubMed   Mentions: 3  
    15. Levels and in vitro functional effects of circulating anti-hinge antibodies in melanoma patients receiving the immune checkpoint inhibitor pembrolizumab. PLoS One. 2023; 18(9):e0290793. Hock BD, Goddard L, MacPherson SA, Strother M, Gibbs D, Pearson JF, McKenzie JL. PMID: 37713423; PMCID: PMC10503750.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    16. Polyclonal lymphoid expansion drives paraneoplastic autoimmunity in neuroblastoma. Cell Rep. 2023 08 29; 42(8):112879. Rosenberg MI, Greenstein E, Buchkovich M, Peres A, Santoni-Rugiu E, Yang L, Mikl M, Vaksman Z, Gibbs DL, Reshef D, Salovin A, Irwin MS, Naranjo A, Ulitsky I, de Alarcon PA, Matthay KK, Weigman V, Yaari G, Panzer JA, Friedman N, Maris JM. PMID: 37537844; PMCID: PMC10551040.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    17. Association between systemic treatment with immune checkpoint inhibitor therapy in renal cell carcinoma and reduced risk of brain metastasis development. Neurosurg Focus. 2023 08; 55(2):E2. Damante M, Huntoon K, Gibbs D, Pezzutti D, Olencki T, Elder JB. PMID: 37527670.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    18. Electric bicycles (e-bikes) are an increasingly common pediatric public health problem. Surg Open Sci. 2023 Aug; 14:46-51. Goodman LF, Birnbaum Flyer Z, Schomberg J, Maginas M, Wallace E, Vukcevich O, Awan S, Gibbs D, Nahmias J, Guner YS. PMID: 37519328; PMCID: PMC10372360.
      View in: PubMed   Mentions:
    19. Concerted epithelial and stromal changes during progression of Barrett's Esophagus to invasive adenocarcinoma exposed by multi-scale, multi-omics analysis. bioRxiv. 2023 Jun 11. Strasser MK, Gibbs DL, Gascard P, Bons J, Hickey JW, Schürch CM, Tan Y, Black S, Chu P, Ozkan A, Basisty N, Sangwan V, Rose J, Shah S, Camilleri-Broet S, Fiset PO, Bertos N, Berube J, Djambazian H, Li R, Oikonomopoulos S, Fels-Elliott DR, Vernovsky S, Shimshoni E, Collyar D, Russell A, Ragoussis I, Stachler M, Goldenring JR, McDonald S, Ingber DE, Schilling B, Nolan GP, Tlsty TD, Huang S, Ferri LE. PMID: 37333362; PMCID: PMC10274886.
      View in: PubMed   Mentions: 1  
    20. Apposition of Fibroblasts With Metaplastic Gastric Cells Promotes Dysplastic Transition. Gastroenterology. 2023 08; 165(2):374-390. Lee SH, Contreras Panta EW, Gibbs D, Won Y, Min J, Zhang C, Roland JT, Hong SH, Sohn Y, Krystofiak E, Jang B, Ferri L, Sangwan V, Ragoussis J, Camilleri-Broët S, Caruso J, Chen-Tanyolac C, Strasser M, Gascard P, Tlsty TD, Huang S, Choi E, Goldenring JR. PMID: 37196797; PMCID: PMC10375042.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    21. Neoadjuvant Arterial Embolization of Spine Metastases Associated With Improved Local Control in Patients Receiving Surgical Decompression and Stereotactic Body Radiotherapy. Neurosurgery. 2023 08 01; 93(2):320-329. Damante MA, Gibbs D, Dibs K, Palmer JD, Raval R, Scharschmidt T, Chakravarti A, Bourekas E, Boulter D, Thomas E, Grecula J, Beyer S, Xu D, Nimjee S, Youssef P, Lonser R, Blakaj DM, Elder JB. PMID: 36861971.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    22. The Effects of Nicotine- and Cigarette-Related Products on Osteogenesis, Bone Formation, and Bone Mineralization: A Systematic Review. Neurosurgery. 2023 08 01; 93(2):247-256. Gruber MD, Gibbs D, Vignolles-Jeong J, Viljoen S, Grossbach AJ, Xu D. PMID: 36815769.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimals
    23. Back Pain: Differential Diagnosis and Management. Neurol Clin. 2023 02; 41(1):61-76. Gibbs D, McGahan BG, Ropper AE, Xu DS. PMID: 36400559.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    24. Lateral Retropleural Thoracic Diskectomy for a Calcified Herniated Disk: 2-Dimensional Operative Video. Oper Neurosurg (Hagerstown). 2023 02 01; 24(2):e107. Gibbs D, Bayley J, Grossbach AJ, Xu DS. PMID: 36227188.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    25. Comparison of bone formation mediated by bone morphogenetic protein delivered by nanoclay gels with clinical techniques (autograft and InductOs®) in an ovine bone model. J Tissue Eng. 2022 Jan-Dec; 13:20417314221113746. Black C, Gibbs D, McEwan J, Kanczler J, Fernández MP, Tozzi G, Dawson J, Oreffo R. PMID: 36147728; PMCID: PMC9486279.
      View in: PubMed   Mentions: 5  
    26. No more bull: pediatric head injuries as a result of mechanical bull rides. Childs Nerv Syst. 2023 01; 39(1):1-4. Xu JC, Vargas AJ, Waunch A, Gibbs DL, Cappon JP, Loudon WG, Magge SN. PMID: 35680683.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    27. Assessing Meaningful Community Engagement: A Conceptual Model to Advance Health Equity through Transformed Systems for Health: Organizing Committee for Assessing Meaningful Community Engagement in Health & Health Care Programs & Policies. NAM Perspect. 2022; 2022. Aguilar-Gaxiola S, Ahmed SM, Anise A, Azzahir A, Baker KE, Cupito A, Eder M, Everette TD, Erwin K, Felzien M, Freeman E, Gibbs D, Greene-Moton E, Hernández-Cancio S, Hwang A, Jones F, Jones G, Jones M, Khodyakov D, Michener JL, Milstein B, Oto-Kent DS, Orban M, Pusch B, Shah M, Shaw M, Tarrant J, Wallerstein N, Westfall JM, Williams A, Zaldivar R. PMID: 35891775; PMCID: PMC9303007.
      View in: PubMed   Mentions: 99  
    28. A functional module states framework reveals transcriptional states for drug and target prediction. Cell Rep. 2022 01 18; 38(3):110269. Qin G, Knijnenburg TA, Gibbs DL, Moser R, Monnat RJ, Kemp CJ, Shmulevich I. PMID: 35045296.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    29. Development and validation of machine learning models for the prediction of blunt cerebrovascular injury in children. J Pediatr Surg. 2022 Apr; 57(4):732-738. Farzaneh CA, Schomberg J, Sullivan BG, Guner YS, Nance ML, Gibbs D, Yu PT. PMID: 34872731.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    30. Patient-Specific Cell Communication Networks Associate With Disease Progression in Cancer. Front Genet. 2021; 12:667382. Gibbs DL, Aguilar B, Thorsson V, Ratushny AV, Shmulevich I. PMID: 34512714; PMCID: PMC8429851.
      View in: PubMed   Mentions: 3  
    31. Correlation Between Neurosurgical Residency Written Board Scores and Case Logs. World Neurosurg. 2021 11; 155:e236-e239. McGahan BG, Hatef J, Gibbs D, Leonard J, Menousek J, Thorell WE, Powers CJ. PMID: 34419657.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    32. Determinants of Diabetes Disease Management, 2011-2019. Healthcare (Basel). 2021 Jul 26; 9(8). Fulton LV, Adepoju OE, Dolezel D, Ekin T, Gibbs D, Hewitt B, McLeod A, Liaw W, Lieneck C, Ramamonjiarivelo Z, Shanmugam R, Woodward LD. PMID: 34442081; PMCID: PMC8393363.
      View in: PubMed   Mentions: 6  
    33. Analysis of Unintentional Falls in Pediatric Population and Predictors of Morbidity. J Surg Res. 2021 11; 267:48-55. Farzaneh C, Schomberg J, Sullivan B, Yu PT, Loudon W, Duong WQ, Gibbs D, Guner YS. PMID: 34130238.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    34. PRoBE the cloud toolkit: finding the best biomarkers of drug response within a breast cancer clinical trial. JAMIA Open. 2021 Apr; 4(2):ooab038. O'Grady N, Gibbs DL, Abdilleh K, Asare A, Asare S, Venters S, Brown-Swigart L, Hirst GL, Wolf D, Yau C, van 't Veer LJ, Esserman L, Basu A. PMID: 34095775; PMCID: PMC8172495.
      View in: PubMed   Mentions: 2  
    35. COVID-19: Differences in sentinel injury and child abuse reporting during a pandemic. Child Abuse Negl. 2021 06; 116(Pt 2):104990. Sharma S, Wong D, Schomberg J, Knudsen-Robbins C, Gibbs D, Berkowitz C, Heyming T. PMID: 33707071; PMCID: PMC8446928.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansCellsPHPublic Health
    36. Are routine chest X-rays following chest tube removal necessary in asymptomatic pediatric patients? Pediatr Surg Int. 2021 May; 37(5):631-637. Kanamori LM, Guner Y, Gibbs D, Schomberg J. PMID: 33385243.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    37. Prolonged hospital length of stay in pediatric trauma: a model for targeted interventions. Pediatr Res. 2021 08; 90(2):464-471. Gibbs D, Ehwerhemuepha L, Moreno T, Guner Y, Yu P, Schomberg J, Wallace E, Feaster W. PMID: 33184499.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    38. Mapping carbon accumulation potential from global natural forest regrowth. Nature. 2020 09; 585(7826):545-550. Cook-Patton SC, Leavitt SM, Gibbs D, Harris NL, Lister K, Anderson-Teixeira KJ, Briggs RD, Chazdon RL, Crowther TW, Ellis PW, Griscom HP, Herrmann V, Holl KD, Houghton RA, Larrosa C, Lomax G, Lucas R, Madsen P, Malhi Y, Paquette A, Parker JD, Paul K, Routh D, Roxburgh S, Saatchi S, van den Hoogen J, Walker WS, Wheeler CE, Wood SA, Xu L, Griscom BW. PMID: 32968258.
      View in: PubMed   Mentions: 71     Fields:    Translation:AnimalsPHPublic Health
    39. CRI iAtlas: an interactive portal for immuno-oncology research. F1000Res. 2020; 9:1028. Eddy JA, Thorsson V, Lamb AE, Gibbs DL, Heimann C, Yu JX, Chung V, Chae Y, Dang K, Vincent BG, Shmulevich I, Guinney J. PMID: 33214875; PMCID: PMC7658727.
      View in: PubMed   Mentions: 41     Fields:    Translation:HumansCells
    40. A multicenter mixed-effects model for inference and prediction of 72-h return visits to the emergency department for adult patients with trauma-related diagnoses. J Orthop Surg Res. 2020 Aug 14; 15(1):331. Yaghmaei E, Ehwerhemuepha L, Feaster W, Gibbs D, Rakovski C. PMID: 32795327; PMCID: PMC7427714.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    41. A generalizable data-driven multicellular model of pancreatic ductal adenocarcinoma. Gigascience. 2020 07 01; 9(7). Aguilar B, Gibbs DL, Reiss DJ, McConnell M, Danziger SA, Dervan A, Trotter M, Bassett D, Hershberg R, Ratushny AV, Shmulevich I. PMID: 32696951; PMCID: PMC7374045.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    42. Prediction of 7-Day Readmission Risk for Pediatric Trauma Patients. J Surg Res. 2020 09; 253:254-261. Delaplain PT, Guner YS, Feaster W, Wallace E, Gibbs D, Gholizadeh M, Reyna T, Ehwerhemuepha L. PMID: 32388388.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    43. Intrinsic Genetic and Transcriptomic Patterns Reflect Tumor Immune Subtypes Facilitating Exploring Possible Combinatory Therapy. Front Mol Biosci. 2020; 7:53. Xu Y, Li D, Liu Z, Gibbs DL, Xie L, Qin G. PMID: 32391377; PMCID: PMC7191006.
      View in: PubMed   Mentions: 1  
    44. Exploratory Full-Field Strain Analysis of Regenerated Bone Tissue from Osteoinductive Biomaterials. Materials (Basel). 2020 Jan 01; 13(1). Peña Fernández M, Black C, Dawson J, Gibbs D, Kanczler J, Oreffo ROC, Tozzi G. PMID: 31906343; PMCID: PMC6981952.
      View in: PubMed   Mentions: 6  
    45. ADAPTS: Automated deconvolution augmentation of profiles for tissue specific cells. PLoS One. 2019; 14(11):e0224693. Danziger SA, Gibbs DL, Shmulevich I, McConnell M, Trotter MWB, Schmitz F, Reiss DJ, Ratushny AV. PMID: 31743345; PMCID: PMC6863530.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    46. A Pan-Cancer Approach to Predict Responsiveness to Immune Checkpoint Inhibitors by Machine Learning. Cancers (Basel). 2019 Oct 15; 11(10). Polano M, Chierici M, Dal Bo M, Gentilini D, Di Cintio F, Baboci L, Gibbs DL, Furlanello C, Toffoli G. PMID: 31618839; PMCID: PMC6827166.
      View in: PubMed   Mentions: 29  
    47. Zebrafish embryo as a replacement model for initial biocompatibility studies of biomaterials and drug delivery systems. Acta Biomater. 2019 12; 100:235-243. Rothenbücher TSP, Ledin J, Gibbs D, Engqvist H, Persson C, Hulsart-Billström G. PMID: 31585201.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    48. The Immune Landscape of Cancer. Immunity. 2019 Aug 20; 51(2):411-412. Thorsson V, Gibbs DL, Brown SD, Wolf D, Bortone DS, Ou Yang TH, Porta-Pardo E, Gao GF, Plaisier CL, Eddy JA, Ziv E, Culhane AC, Paull EO, Sivakumar IKA, Gentles AJ, Malhotra R, Farshidfar F, Colaprico A, Parker JS, Mose LE, Vo NS, Liu J, Liu Y, Rader J, Dhankani V, Reynolds SM, Bowlby R, Califano A, Cherniack AD, Anastassiou D, Bedognetti D, Mokrab Y, Newman AM, Rao A, Chen K, Krasnitz A, Hu H, Malta TM, Noushmehr H, Pedamallu CS, Bullman S, Ojesina AI, Lamb A, Zhou W, Shen H, Choueiri TK, Weinstein JN, Guinney J, Saltz J, Holt RA, Rabkin CS, Cancer Genome Atlas Research Network, Lazar AJ, Serody JS, Demicco EG, Disis ML, Vincent BG, Shmulevich I. PMID: 31433971.
      View in: PubMed   Mentions: 285     Fields:    
    49. Genomic and molecular characterization of preterm birth. Proc Natl Acad Sci U S A. 2019 03 19; 116(12):5819-5827. Knijnenburg TA, Vockley JG, Chambwe N, Gibbs DL, Humphries C, Huddleston KC, Klein E, Kothiyal P, Tasseff R, Dhankani V, Bodian DL, Wong WSW, Glusman G, Mauldin DE, Miller M, Slagel J, Elasady S, Roach JC, Kramer R, Leinonen K, Linthorst J, Baveja R, Baker R, Solomon BD, Eley G, Iyer RK, Maxwell GL, Bernard B, Shmulevich I, Hood L, Niederhuber JE. PMID: 30833390; PMCID: PMC6431191.
      View in: PubMed   Mentions: 44     Fields:    Translation:HumansCells
    50. Flexibility of Boolean Network Reservoir Computers in Approximating Arbitrary Recursive and Non-Recursive Binary Filters. Entropy (Basel). 2018 Dec 11; 20(12). Echlin M, Aguilar B, Notarangelo M, Gibbs DL, Shmulevich I. PMID: 33266678; PMCID: PMC7512538.
      View in: PubMed   Mentions: 5  
    51. Integrative Molecular Characterization of Malignant Pleural Mesothelioma. Cancer Discov. 2018 12; 8(12):1548-1565. Hmeljak J, Sanchez-Vega F, Hoadley KA, Shih J, Stewart C, Heiman D, Tarpey P, Danilova L, Drill E, Gibb EA, Bowlby R, Kanchi R, Osmanbeyoglu HU, Sekido Y, Takeshita J, Newton Y, Graim K, Gupta M, Gay CM, Diao L, Gibbs DL, Thorsson V, Iype L, Kantheti H, Severson DT, Ravegnini G, Desmeules P, Jungbluth AA, Travis WD, Dacic S, Chirieac LR, Galateau-Sallé F, Fujimoto J, Husain AN, Silveira HC, Rusch VW, Rintoul RC, Pass H, Kindler H, Zauderer MG, Kwiatkowski DJ, Bueno R, Tsao AS, Creaney J, Lichtenberg T, Leraas K, Bowen J, TCGA Research Network, Felau I, Zenklusen JC, Akbani R, Cherniack AD, Byers LA, Noble MS, Fletcher JA, Robertson AG, Shen R, Aburatani H, Robinson BW, Campbell P, Ladanyi M. PMID: 30322867; PMCID: PMC6310008.
      View in: PubMed   Mentions: 331     Fields:    Translation:Humans
    52. Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics. Cell. 2018 04 05; 173(2):305-320.e10. Ding L, Bailey MH, Porta-Pardo E, Thorsson V, Colaprico A, Bertrand D, Gibbs DL, Weerasinghe A, Huang KL, Tokheim C, Cortés-Ciriano I, Jayasinghe R, Chen F, Yu L, Sun S, Olsen C, Kim J, Taylor AM, Cherniack AD, Akbani R, Suphavilai C, Nagarajan N, Stuart JM, Mills GB, Wyczalkowski MA, Vincent BG, Hutter CM, Zenklusen JC, Hoadley KA, Wendl MC, Shmulevich L, Lazar AJ, Wheeler DA, Getz G, Cancer Genome Atlas Research Network. PMID: 29625049; PMCID: PMC5916814.
      View in: PubMed   Mentions: 208     Fields:    Translation:HumansCells
    53. The Immune Landscape of Cancer. Immunity. 2018 04 17; 48(4):812-830.e14. Thorsson V, Gibbs DL, Brown SD, Wolf D, Bortone DS, Ou Yang TH, Porta-Pardo E, Gao GF, Plaisier CL, Eddy JA, Ziv E, Culhane AC, Paull EO, Sivakumar IKA, Gentles AJ, Malhotra R, Farshidfar F, Colaprico A, Parker JS, Mose LE, Vo NS, Liu J, Liu Y, Rader J, Dhankani V, Reynolds SM, Bowlby R, Califano A, Cherniack AD, Anastassiou D, Bedognetti D, Mokrab Y, Newman AM, Rao A, Chen K, Krasnitz A, Hu H, Malta TM, Noushmehr H, Pedamallu CS, Bullman S, Ojesina AI, Lamb A, Zhou W, Shen H, Choueiri TK, Weinstein JN, Guinney J, Saltz J, Holt RA, Rabkin CS, Cancer Genome Atlas Research Network, Lazar AJ, Serody JS, Demicco EG, Disis ML, Vincent BG, Shmulevich I. PMID: 29628290; PMCID: PMC5982584.
      View in: PubMed   Mentions: 3266     Fields:    Translation:HumansCells
    54. The ISB Cancer Genomics Cloud: A Flexible Cloud-Based Platform for Cancer Genomics Research. Cancer Res. 2017 11 01; 77(21):e7-e10. Reynolds SM, Miller M, Lee P, Leinonen K, Paquette SM, Rodebaugh Z, Hahn A, Gibbs DL, Slagel J, Longabaugh WJ, Dhankani V, Reyes M, Pihl T, Backus M, Bookman M, Deflaux N, Bingham J, Pot D, Shmulevich I. PMID: 29092928; PMCID: PMC5780183.
      View in: PubMed   Mentions: 38     Fields:    Translation:Humans
    55. Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle. PLoS Comput Biol. 2017 Jun; 13(6):e1005591. Gibbs DL, Shmulevich I. PMID: 28628618; PMCID: PMC5495484.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    56. Combining dependent P-values with an empirical adaptation of Brown's method. Bioinformatics. 2016 09 01; 32(17):i430-i436. Poole W, Gibbs DL, Shmulevich I, Bernard B, Knijnenburg TA. PMID: 27587659; PMCID: PMC5013915.
      View in: PubMed   Mentions: 64     Fields:    Translation:Humans
    57. Using Incomplete Trios to Boost Confidence in Family Based Association Studies. Front Genet. 2016; 7:34. Dhankani V, Gibbs DL, Knijnenburg T, Kramer R, Vockley J, Niederhuber J, Shmulevich I, Bernard B. PMID: 27047537; PMCID: PMC4796035.
      View in: PubMed   Mentions: 1  
    58. Bone Tissue Engineering. Curr Mol Biol Rep. 2015; 1(3):132-140. Black CR, Goriainov V, Gibbs D, Kanczler J, Tare RS, Oreffo RO. PMID: 26618105; PMCID: PMC4654432.
      View in: PubMed   Mentions: 83  
    59. Multi-omic network signatures of disease. Front Genet. 2014 Jan 07; 4:309. Gibbs DL, Gralinski L, Baric RS, McWeeney SK. PMID: 24432028; PMCID: PMC3882664.
      View in: PubMed   Mentions: 10  
    60. Protein co-expression network analysis (ProCoNA). J Clin Bioinforma. 2013 Jun 01; 3(1):11. Gibbs DL, Baratt A, Baric RS, Kawaoka Y, Smith RD, Orwoll ES, Katze MG, McWeeney SK. PMID: 23724967; PMCID: PMC3695838.
      View in: PubMed   Mentions: 18  
    61. Management of rectal stenosis with endoscopic balloon dilatation. J Pediatr Surg. 2013 Apr; 48(4):e13-6. Hidas G, Gibbs D, Alireza A, Khoury AE. PMID: 23583158.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    62. Multilaboratory study of the Biomic automated well-reading instrument versus MicroScan WalkAway for reading MicroScan antimicrobial susceptibility and identification panels. J Clin Microbiol. 2013 May; 51(5):1548-54. Fader RC, Weaver E, Fossett R, Toyras M, Vanderlaan J, Gibbs D, Wang A, Thierjung N. PMID: 23486713; PMCID: PMC3647896.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    63. Copy number variation analysis in 98 individuals with PHACE syndrome. J Invest Dermatol. 2013 Mar; 133(3):677-684. Siegel DH, Shieh JTC, Kwon EK, Baselga E, Blei F, Cordisco M, Dobyns WB, Duffy KJ, Garzon MC, Gibbs DL, Grimmer JF, Hayflick SJ, Krol AL, Kwok PY, Lorier R, Matter A, McWeeney S, Metry D, Mitchell S, Pope E, Santoro JL, Stevenson DA, Bayrak-Toydemir P, Wilmot B, Worthey EA, Frieden IJ, Drolet BA, Broeckel U. PMID: 23096700; PMCID: PMC3971866.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    64. Geographic variation in the frequency of isolation and fluconazole and voriconazole susceptibilities of Candida glabrata: an assessment from the ARTEMIS DISK Global Antifungal Surveillance Program. Diagn Microbiol Infect Dis. 2010 Jun; 67(2):162-71. Pfaller MA, Diekema DJ, Gibbs DL, Newell VA, Barton R, Bijie H, Bille J, Chang SC, da Luz Martins M, Duse A, Dzierzanowska D, Ellis D, Finquelievich J, Gould I, Gur D, Hoosen A, Lee K, Mallatova N, Mallie M, Peng NG, Petrikos G, Santiago A, Trupl J, VanDen Abeele AM, Wadula J, Zaidi M, Global Antifungal Surveillance Group. PMID: 20338711.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansAnimals
    65. Phase II study of ASA404 (vadimezan, 5,6-dimethylxanthenone-4-acetic acid/DMXAA) 1800mg/m(2) combined with carboplatin and paclitaxel in previously untreated advanced non-small cell lung cancer. Lung Cancer. 2009 Aug; 65(2):192-7. McKeage MJ, Reck M, Jameson MB, Rosenthal MA, Gibbs D, Mainwaring PN, Freitag L, Sullivan R, Von Pawel J. PMID: 19409645.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansCTClinical Trials
    66. Evaluation of the Biomic V3 microbiology system for identification of selected species on BBL CHROMagar orientation agar and CHROMagar MRSA medium. J Clin Microbiol. 2008 Oct; 46(10):3488-90. Baron EJ, D'Souza H, Wang AQ, Gibbs DL. PMID: 18701661; PMCID: PMC2566125.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    67. Comparison of the susceptibilities of Candida spp. to fluconazole and voriconazole in a 4-year global evaluation using disk diffusion. J Clin Microbiol. 2003 Dec; 41(12):5623-32. Hazen KC, Baron EJ, Colombo AL, Girmenia C, Sanchez-Sousa A, del Palacio A, de Bedout C, Gibbs DL, Global Antifungal Surveillance Group. PMID: 14662952; PMCID: PMC309015.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansAnimalsCells
    68. Selective delivery of CB300638, a cyclopenta[g]quinazoline-based thymidylate synthase inhibitor into human tumor cell lines overexpressing the alpha-isoform of the folate receptor. Cancer Res. 2003 Jul 01; 63(13):3612-8. Theti DS, Bavetsias V, Skelton LA, Titley J, Gibbs D, Jansen G, Jackman AL. PMID: 12839949.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    69. Mesenteric lymphatic malformation associated with small-bowel volvulus - two cases and a review of the literature. Pediatr Radiol. 2002 May; 32(5):362-5. Traubici J, Daneman A, Wales P, Gibbs D, Fecteau A, Kim P. PMID: 11956726.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
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